Rh4AG236300

transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010609
Physical Location & Seq
Forward (+)
54136433 .. 54146557
10125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG236300.1

Sequence Viewer

Length: 471 bp
ATGTTGATGATACCAAGTTGGTTGGAAGGAGCAGCAGGTTGTATAGCCGAGAGTTATGTTGGAGAAGAATGTGTGGAGTTTTGCTCTGAGTTTGTTCACCATTGTGATCCAATTGGAGTTCCTAAGGATTCAAGTAAGTTGTGTGGACCACTTTCTATTGCAAAACTAAAGTCCATAGATGAGAAAGAGAGAGACCAGGCACATCTTCATGTCCTATCCAATAATGCTGAAGTGGATCCGTATAAGAAGGCACATAGAAAGATTGTGGAGCAGTTGTACGGGGGAAAAATAAAGAGTAAACAATGGCTATTAAGTGAGCACAATCGTACTTTTGCAGATTGGTTTCAATCCAAGGTTCATTGTCATGAGAATGGAGAGGCGGCTTTAATGCTGGCTTTGGAAGGGGTTGGGTCTGTATCACAGGTCAAGCTGGTAGGAGAAGCAAGTGACAAAACGCAAACAAGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

156

Amino Acids

17.3

Weight (kDa)

6.05

Isoelectric Point (pI)

22.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 26
AciI CCGC 1 cut(s) 380
AclWI GGATC 3 cut(s) 101, 230, 243
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 278, 328
AgsI TTSAA 2 cut(s) 132, 347
AjnI CCWGG 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 3 cut(s) 101, 230, 243
ApeKI GCWGC 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 123
BamHI GGATCC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 2 cut(s) 33, 381
BlsI GCNGC 2 cut(s) 34, 382
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bse21I CCTNAGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 106, 235
BspACI CCGC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 3 cut(s) 101, 230, 243
BspTNI GGTCTC 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 2 cut(s) 106, 235
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 87, 123
BstKTI GATC 2 cut(s) 109, 238
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 106, 235
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 277, 327
CviAII CATG 2 cut(s) 209, 365
CviJI RGCY 5 cut(s) 47, 307, 383, 395, 430
CviKI_1 RGCY 5 cut(s) 47, 307, 383, 395, 430
CviQI GTAC 2 cut(s) 277, 327
DdeI CTNAG 2 cut(s) 87, 123
DpnI GATC 2 cut(s) 108, 237
DpnII GATC 2 cut(s) 106, 235
Eco130I CCWWGG 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 212, 368
FaiI YATR 7 cut(s) 44, 57, 176, 210, 243, 255, 366
FatI CATG 2 cut(s) 208, 364
Fnu4HI GCNGC 2 cut(s) 33, 381
Fsp4HI GCNGC 2 cut(s) 33, 381
GluI GCNGC 2 cut(s) 33, 381
Hin1II CATG 2 cut(s) 212, 368
HinfI GANTC 1 cut(s) 128
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 3 cut(s) 97, 146, 299
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 3 cut(s) 97, 146, 299
HpyAV CCTTC 3 cut(s) 20, 241, 395
HpyCH4V TGCA 2 cut(s) 161, 335
HpyF3I CTNAG 2 cut(s) 87, 123
Hsp92II CATG 2 cut(s) 212, 368
Kzo9I GATC 2 cut(s) 106, 235
LmnI GCTCC 2 cut(s) 29, 268
LpnPI CCDG 6 cut(s) 21, 182, 209, 377, 407, 416
Lsp1109I GCAGC 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 446
MalI GATC 2 cut(s) 108, 237
MboI GATC 2 cut(s) 106, 235
MboII GAAGA 2 cut(s) 77, 197
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 1 cut(s) 370
MseI TTAA 2 cut(s) 311, 386
MslI CAYNNNNRTG 4 cut(s) 102, 207, 363, 369
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 197
NdeII GATC 2 cut(s) 106, 235
NlaIII CATG 2 cut(s) 212, 368
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 102
PagI TCATGA 1 cut(s) 364
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 34, 382
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 2 cut(s) 278, 328
RsaNI GTAC 2 cut(s) 277, 327
RseI CAYNNNNRTG 4 cut(s) 102, 207, 363, 369
SaqAI TTAA 2 cut(s) 311, 386
SatI GCNGC 2 cut(s) 33, 381
Sau3AI GATC 2 cut(s) 106, 235
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 321
SetI ASST 4 cut(s) 40, 357, 426, 432
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 4 cut(s) 102, 207, 363, 369
Sse9I AATT 1 cut(s) 111
SsiI CCGC 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 351
TasI AATT 1 cut(s) 111
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 311, 386
Tru9I TTAA 2 cut(s) 311, 386
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 197, 347
TspGWI ACGGA 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.