Rh5AG221300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010609
Physical Location & Seq
Reverse (-)
26127916 .. 26144736
16821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG221300.1

Sequence Viewer

Length: 378 bp
ATGTCTCCAATTCGTAGAGCTCGAGAACTCGTCGTCATTTTGGTCAATGTCATCTTCGCAGCCGTCGTTGCCAACTATTATTGTGCCTCCTCAATCCCAGCCCAAAACTACTGGAATTTTTTAGATTTGCCAGCGCCGGATTGTGTCAAGCTGAAGTCAGTAGATGAAGAAGTCAGAGACCAGGCACATCTTCATGTGTTGTTCAATAATGCTGAGGTGGATCCATATAGAAACTCAAACAAGGGCAACAACAACTTTGAAGAAGAGCAGTGCAGGGACGTCGTTTTAGGAACAGCCTCGAGAGGCTTTATTAACTCTGCTCCATATAGGTTGGGTTATTTTCAACTTGTTACGGCTAACGACCCATCAAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.14

Weight (kDa)

5.61

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AclWI GGATC 2 cut(s) 215, 228
AcsI RAATTY 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 279
AgsI TTSAA 3 cut(s) 205, 260, 344
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 20, 151
AluI AGCT 2 cut(s) 20, 151
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 2 cut(s) 9, 171
AlwI GGATC 2 cut(s) 215, 228
Ama87I CYCGRG 2 cut(s) 21, 298
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 1 cut(s) 136
AvaI CYCGRG 2 cut(s) 21, 298
BamHI GGATCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 373
BceAI ACGGC 2 cut(s) 47, 369
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 9, 171
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 2 cut(s) 21, 298
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 2 cut(s) 21, 298
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 9, 171
BsmFI GGGAC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 171
BsoBI CYCGRG 2 cut(s) 21, 298
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 215, 228
BspQI GCTCTTC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 116
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 9, 171
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 136
CviAII CATG 1 cut(s) 194
CviJI RGCY 7 cut(s) 20, 62, 101, 151, 296, 306, 356
CviKI_1 RGCY 7 cut(s) 20, 62, 101, 151, 296, 306, 356
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 173
Eco88I CYCGRG 2 cut(s) 21, 298
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 22
FaeI CATG 1 cut(s) 197
FaiI YATR 5 cut(s) 195, 226, 228, 325, 327
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 60
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 137
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 23, 300, 369
Hpy99I CGWCG 3 cut(s) 35, 68, 284
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 220
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 7 cut(s) 97, 111, 144, 150, 167, 194, 259
Lsp1109I GCAGC 1 cut(s) 71
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 349
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 5 cut(s) 46, 179, 182, 272, 275
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 9, 115, 373
MnlI CCTC 5 cut(s) 97, 100, 208, 296, 307
MseI TTAA 2 cut(s) 312, 376
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 222
PaeR7I CTCGAG 2 cut(s) 21, 298
PciSI GCTCTTC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 2 cut(s) 19, 63
PkrI GCNGC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 192
SacI GAGCTC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 312, 376
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 22
SetI ASST 5 cut(s) 22, 153, 219, 282, 332
Sfr274I CTCGAG 2 cut(s) 21, 298
SlaI CTCGAG 2 cut(s) 21, 298
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 21, 298
SmoI CTYRAG 2 cut(s) 21, 298
Sse9I AATT 3 cut(s) 9, 115, 373
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 180
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 22, 299
TasI AATT 3 cut(s) 9, 115, 373
Tru1I TTAA 2 cut(s) 312, 376
Tru9I TTAA 2 cut(s) 312, 376
TscAI CASTG 1 cut(s) 275
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 180, 182
TspRI CASTG 1 cut(s) 275
XapI RAATTY 1 cut(s) 115
XhoI CTCGAG 2 cut(s) 21, 298
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.