Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Reverse (-)

39617549 .. 39620048

Gene Structure 2500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG313400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTGTGGCAGCTGGCCTTGTTTTTCTCCTAGGTTCTGTTCTAAATGTCATCACTGGCACCGTTAATACCATCGCTACCTTGGTTTCAATCGCCACAGTTGATAAGATTGGAAGAAGAGCACTGTTCCTCGAAGGTGGTGTGCAAATGATCATTTGTCAGATCGCTGTTGCCATCATGATTGCATTGAAGTTTGGCTTCCGTGGAGAAGGATCATTGGCAAAAGGCAAAGCCGATTTTCTCCTGTTCTTGATCTGTGCATACGTAGCGGGATTTGCATGGTCTTGGGGTCTGTTGGGGTGGTTGGTGCCTAGTGAGATATGTCCTCTGGAAATCCGATCAGCTGGACAGGCCATCAATGTCTCGGTTAACATGTTATTCACTTTTATTATTGGCCAAGGCTTCCTCACCATGATCTGCAAAATGAAGTTTGGTCTCTTCTTCTTCTTTGCTAGCTTTGTGATTATTATGACCATTTTCGTTGCGCTTCTTATGCTTGAGACAAAGAATGTTCCCATTGAAGAGATCAATGCAGTCTGGAAAGCTCAATGTTTTTGGGGCAAGTACATCCCGGATGAAGTTGTTATTGATGGCAGACATACCAAAACTATAGTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

206

Amino Acids

22.6

Weight (kDa)

8.64

Isoelectric Point (pI)

21.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	14 - 180	5.7e-39	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	59, 307
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	394
AfaI	GTAC	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	90, 190, 521
AluBI	AGCT	4 cut(s)	14, 344, 456, 545
AluI	AGCT	4 cut(s)	14, 344, 456, 545
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	3 cut(s)	367, 440, 494
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	3 cut(s)	16, 351, 394
ApeKI	GCWGC	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	487
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	400
AsuNHI	GCTAGC	1 cut(s)	452
AvrII	CCTAGG	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	396
BanI	GGYRCC	2 cut(s)	59, 307
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	4 cut(s)	80, 182, 362, 584
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	3 cut(s)	367, 440, 494
BfaI	CTAG	3 cut(s)	32, 312, 453
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	1 cut(s)	12
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	61, 309
BmrFI	CCNGG	1 cut(s)	572
BmtI	GCTAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	4 cut(s)	31, 81, 202, 397
Bse1I	ACTGG	1 cut(s)	61
BseDI	CCNNGG	4 cut(s)	31, 81, 202, 397
BseGI	GGATG	2 cut(s)	567, 580
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	3 cut(s)	18, 353, 396
BshNI	GGYRCC	2 cut(s)	59, 307
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	572
BsmAI	GTCTC	3 cut(s)	367, 440, 494
BsnI	GGCC	3 cut(s)	18, 353, 396
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	3 cut(s)	18, 353, 396
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	61, 309
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	112
BspT107I	GGYRCC	2 cut(s)	59, 307
BspTNI	GGTCTC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	4 cut(s)	31, 81, 202, 397
BssMI	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
BssT1I	CCWWGG	3 cut(s)	31, 81, 397
Bst4CI	ACNGT	3 cut(s)	64, 100, 126
Bst6I	CTCTTC	3 cut(s)	112, 443, 516
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	16, 454
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	567, 580
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	7 cut(s)	153, 165, 215, 255, 341, 417, 528
BstMAI	GTCTC	3 cut(s)	367, 440, 494
BstMBI	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 275, 350, 493
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	1 cut(s)	609
BstSNI	TACGTA	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	18, 353, 396
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	567, 580
BtsIMutI	CAGTG	2 cut(s)	54, 122
Cac8I	GCNNGC	2 cut(s)	16, 454
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	4 cut(s)	178, 279, 373, 412
CviQI	GTAC	1 cut(s)	565
DpnI	GATC	7 cut(s)	152, 164, 214, 254, 340, 416, 527
DpnII	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	3 cut(s)	112, 443, 516
EarI	CTCTTC	3 cut(s)	112, 443, 516
Eco105I	TACGTA	1 cut(s)	265
Eco130I	CCWWGG	3 cut(s)	31, 81, 397
Eco31I	GGTCTC	1 cut(s)	440
EcoT14I	CCWWGG	3 cut(s)	31, 81, 397
ErhI	CCWWGG	3 cut(s)	31, 81, 397
FaeI	CATG	4 cut(s)	181, 282, 376, 415
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	4 cut(s)	177, 278, 372, 411
FauI	CCCGC	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	554, 587
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	3 cut(s)	32, 312, 453
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	18, 353, 396
HapII	CCGG	1 cut(s)	572
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	4 cut(s)	181, 282, 376, 415
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	162, 338
Hpy188III	TCNNGA	4 cut(s)	178, 250, 329, 538
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	128, 203
HpyCH4III	ACNGT	3 cut(s)	64, 100, 126
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	6 cut(s)	145, 185, 260, 278, 420, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 275, 350, 493
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	181, 282, 376, 415
HspAI	GCGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
LguI	GCTCTTC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	42, 257, 314, 330, 335, 523, 585
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	3 cut(s)	32, 312, 453
MaeII	ACGT	1 cut(s)	264
MalI	GATC	7 cut(s)	152, 164, 214, 254, 340, 416, 527
MboI	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
MboII	GAAGA	6 cut(s)	126, 129, 430, 433, 436, 533
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	396
MluNI	TGGCCA	1 cut(s)	396
MnlI	CCTC	3 cut(s)	140, 336, 416
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	2 cut(s)	66, 369
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	2 cut(s)	14, 344
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	4 cut(s)	266, 275, 350, 493
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	4 cut(s)	181, 282, 376, 415
NlaIV	GGNNCC	2 cut(s)	61, 309
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	1 cut(s)	177
PciI	ACATGT	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	265
PscI	ACATGT	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	61, 309
PvuII	CAGCTG	2 cut(s)	14, 344
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	66, 369
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	7 cut(s)	150, 162, 212, 252, 338, 414, 525
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	8 cut(s)	16, 37, 83, 139, 267, 346, 458, 547
SfcI	CTRYAG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
SnaBI	TACGTA	1 cut(s)	265
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	3 cut(s)	32, 312, 453
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	3 cut(s)	31, 81, 397
TaaI	ACNGT	3 cut(s)	64, 100, 126
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	132
TatI	WGTACW	1 cut(s)	564
Tru1I	TTAA	2 cut(s)	66, 369
Tru9I	TTAA	2 cut(s)	66, 369
TscAI	CASTG	2 cut(s)	61, 129
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	440, 591
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	61, 129
XceI	RCATGY	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmaJI	CCTAGG	1 cut(s)	31
XspI	CTAG	3 cut(s)	32, 312, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.