Rmu_co7967344.1_g000001
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7967344.1
OG0015711
Physical Location & Seq
Reverse (-)
2 .. 442
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7967344.1_g000001.1.cds

Sequence Viewer

Length: 330 bp
atgtatggtgttgataagtggggaaggaggaagctcttccttgagggtggaactcaaatgttgatatgccagatagttgtggcggcttgcattggtgctaaatttggattggatggagatgctgataatttgccaaagtggtatgcaattgttgtggtgattttcatctgcacatatgtagcagggtttgcttggtcatggggtcctctagggtggctagtccctagtgaaatcttccccttggaaatcagatcagctgctcagagtgtcaatgtctcagtcaacatgatcttcaccttcattgtggctcaagtcttcttgacaatgttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

6.07

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 101
AluBI AGCT 2 cut(s) 34, 257
AluI AGCT 2 cut(s) 34, 257
Alw26I GTCTC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 169, 286
AvaII GGWCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 3 cut(s) 209, 218, 225
BisI GCNGC 2 cut(s) 84, 258
BlsI GCNGC 2 cut(s) 85, 259
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 307
BpuEI CTTGAG 2 cut(s) 62, 294
BsaBI GATNNNNATC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 164
BseMII CTCAG 2 cut(s) 275, 291
BseXI GCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 251, 288
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 274, 290
BspLI GGNNCC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 251, 288
BssT1I CCWWGG 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 261, 277
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 2 cut(s) 254, 291
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 251, 288
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 135, 170
CviAII CATG 2 cut(s) 198, 286
CviJI RGCY 5 cut(s) 34, 86, 217, 257, 308
CviKI_1 RGCY 5 cut(s) 34, 86, 217, 257, 308
DdeI CTNAG 2 cut(s) 261, 277
DpnI GATC 2 cut(s) 253, 290
DpnII GATC 2 cut(s) 251, 288
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 201, 289
FaiI YATR 7 cut(s) 6, 67, 144, 175, 177, 199, 287
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 197, 285
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 84, 258
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 84, 258
FspBI CTAG 3 cut(s) 209, 218, 225
GluI GCNGC 2 cut(s) 84, 258
Hin1II CATG 2 cut(s) 201, 289
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HphI GGTGA 2 cut(s) 169, 286
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 251, 264
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 18, 307
HpyCH4V TGCA 3 cut(s) 90, 146, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 2 cut(s) 261, 277
Hsp92II CATG 2 cut(s) 201, 289
Kzo9I GATC 2 cut(s) 251, 288
LguI GCTCTTC 1 cut(s) 41
LpnPI CCDG 2 cut(s) 83, 168
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 109
MaeI CTAG 3 cut(s) 209, 218, 225
MalI GATC 2 cut(s) 253, 290
MboI GATC 2 cut(s) 251, 288
MboII GAAGA 4 cut(s) 28, 226, 283, 307
MfeI CAATTG 1 cut(s) 147
MluCI AATT 3 cut(s) 101, 127, 147
MnlI CCTC 3 cut(s) 21, 37, 216
MroXI GAANNNNTTC 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 257
MunI CAATTG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeI CATATG 1 cut(s) 175
NdeII GATC 2 cut(s) 251, 288
NlaIII CATG 2 cut(s) 201, 289
NlaIV GGNNCC 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 85, 259
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 203
PspPPI RGGWCCY 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 41
SatI GCNGC 2 cut(s) 84, 258
Sau3AI GATC 2 cut(s) 251, 288
Sau96I GGNCC 1 cut(s) 203
SetI ASST 3 cut(s) 36, 259, 299
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 41, 309
SmoI CTYRAG 2 cut(s) 41, 309
Sse9I AATT 3 cut(s) 101, 127, 147
SsiI CCGC 1 cut(s) 83
SspMI CTAG 3 cut(s) 209, 218, 225
StyI CCWWGG 1 cut(s) 240
TasI AATT 3 cut(s) 101, 127, 147
TauI GCSGC 1 cut(s) 86
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 154, 289
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 3 cut(s) 209, 218, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.