Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8024056.1

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 529

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8024056.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 427 bp

atgattacctgccaggtcatagtggcaataatcttgggggttaaatttggcgagaatcaagtgctgtcgaaagggtactcaatattggtcgtggcggtgatttgcctcttcgtgatagctttcgggtggtcatgggggccgctcggctggacagtgccgagtgagatattcccactggaaaccagatcagctggacagagcatcacagtggctgtgaaccttttcttcactttcgtcatagcacaggcgtttcttgctatgctatgcgcgttcaaattcgggatcttcctgttctttgctggttggattactgtcatgaccatctttgtttatgtattcctgcctgaaacgaagggagttcctattgaggagatgatactcctctggcgaaagcactggttttggaagaagatagtgcctgaatatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015750 GO:0015751 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0042882 GO:0042900 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

142

Amino Acids

16.15

Weight (kDa)

8.5

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	1 cut(s)	269
AciI	CCGC	2 cut(s)	95, 140
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	2 cut(s)	44, 275
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	2 cut(s)	119, 191
AluI	AGCT	2 cut(s)	119, 191
AlwI	GGATC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	44, 275
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	109
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	180, 401
BseBI	CCWGG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	180, 401
BseRI	GAGGAG	2 cut(s)	371, 383
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	185, 282
BspACI	CCGC	2 cut(s)	95, 140
BspANI	GGCC	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	180, 401
BssMI	GATC	2 cut(s)	185, 282
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	154, 208, 313
Bst6I	CTCTTC	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	188, 285
BstMBI	GATC	2 cut(s)	185, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	139
BtsIMutI	CAGTG	4 cut(s)	159, 173, 213, 394
BveI	ACCTGC	1 cut(s)	17
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	315
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	132, 316
CviJI	RGCY	5 cut(s)	119, 139, 147, 191, 212
CviKI_1	RGCY	5 cut(s)	119, 139, 147, 191, 212
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	2 cut(s)	187, 284
DpnII	GATC	2 cut(s)	185, 282
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	135, 319
FaiI	YATR	8 cut(s)	20, 133, 239, 260, 265, 317, 333, 426
FatI	CATG	2 cut(s)	131, 315
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	135, 319
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	112, 280, 316
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	3 cut(s)	154, 208, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	135, 319
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	185, 282
LweI	GCATC	1 cut(s)	210
MalI	GATC	2 cut(s)	187, 284
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	2 cut(s)	185, 282
MboII	GAAGA	5 cut(s)	100, 217, 277, 418, 421
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	2 cut(s)	44, 275
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	3 cut(s)	116, 361, 392
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	185, 282
NlaIII	CATG	2 cut(s)	135, 319
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	2 cut(s)	123, 183
PagI	TCATGA	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	185, 282
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	5 cut(s)	11, 18, 121, 193, 222
SfaNI	GCATC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	44, 275
SsiI	CCGC	2 cut(s)	95, 140
SspI	AATATT	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	154, 208, 313
TaqI	TCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	44, 275
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	4 cut(s)	159, 180, 213, 401
TspRI	CASTG	4 cut(s)	159, 180, 213, 401
XapI	RAATTY	2 cut(s)	44, 275
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.