Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008562.1

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Forward (+)

26723 .. 28883

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008562.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgtccgttttcgtgtactttttcttgcccgagacaaaggggatcccaattgaagagatgagcagggtttggaaacagcattggtactggaagagatttgttaccgatgaagattaccccaacgatggttatgagatgagcaagccaacaattgtcaacattgttttccccttttttctggttttgctattcaattttgttgttcgcttgtttgttggattgatggatatcaatatcgatactgagatgcatctgcaaggtggagaacccttgatggtctccgtcgattggcgtagctacttgatgccagaatcacgagaaacagcagaagcccaggccaccgaccagcagcagcagcccaggcctccgatcagcctccctcgcagcctcctacagcccagcctccctgcagcctgcaacccgcgcactactgctgcccctgcagctcctgcaaaccctcacgcacccagcctccaccaggcctccctgcgtcttgcgacctgcatcactagtcctacctccagcagcccaagctgcgaacagcccgacctgcagcccacttgcacacctacccgaacctcctgctacataccttctgccagcgaagaaagaaaaaaaacaaccagaaaacaaaagaagaagaaagggaaggagtgggcccagaagaagaaaagaagaaagaaaaaaaaaaggaggaagaaaaaaaagaaggagaagggctgggcccggaaagaaaaaaaaaaggaggaagaagaaaaaaagggaagggagaagggcagcccatcaactgccaattttccgaccagattccagcgatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

273

Amino Acids

31.53

Weight (kDa)

9.93

Isoelectric Point (pI)

75.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	509, 558
AccII	CGCG	1 cut(s)	424
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	2 cut(s)	37, 50
AfaI	GTAC	2 cut(s)	17, 86
AfiI	CCNNNNNNNGG	3 cut(s)	125, 288, 478
AgsI	TTSAA	2 cut(s)	53, 193
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	3 cut(s)	333, 359, 477
AluBI	AGCT	3 cut(s)	297, 446, 534
AluI	AGCT	3 cut(s)	297, 446, 534
Alw26I	GTCTC	2 cut(s)	26, 283
AlwI	GGATC	2 cut(s)	37, 50
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	5 cut(s)	336, 362, 480, 657, 723
ApaI	GGGCCC	2 cut(s)	661, 727
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	4 cut(s)	657, 658, 723, 724
AsuC2I	CCSGG	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	29
BaeGI	GKGCMC	2 cut(s)	661, 727
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	661, 727
BauI	CACGAG	1 cut(s)	315
BccI	CCATC	4 cut(s)	119, 217, 268, 790
BcgI	CGANNNNNNTGC	2 cut(s)	564, 598
BciT130I	CCWGG	3 cut(s)	335, 361, 479
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	26, 283
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	4 cut(s)	392, 408, 441, 551
BfuAI	ACCTGC	2 cut(s)	509, 558
Bme1390I	CCNGG	4 cut(s)	335, 361, 479, 727
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	4 cut(s)	657, 658, 723, 724
BmiI	GGNNCC	3 cut(s)	44, 659, 725
BmrFI	CCNGG	4 cut(s)	335, 361, 479, 727
BmsI	GCATC	4 cut(s)	237, 259, 294, 513
BpmI	CTGGAG	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	727
Bsa29I	ATCGAT	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	333, 359
BsaXI	ACNNNNNCTCC	4 cut(s)	456, 467, 486, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 288, 478
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	3 cut(s)	335, 361, 479
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	333, 359
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	3 cut(s)	125, 288, 478
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	92
BseSI	GKGCMC	2 cut(s)	661, 727
BseYI	CCCAGC	3 cut(s)	398, 467, 720
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	5 cut(s)	338, 364, 482, 659, 725
BshVI	ATCGAT	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	727
BslI	CCNNNNNNNGG	3 cut(s)	125, 288, 478
BsmAI	GTCTC	2 cut(s)	26, 283
BsnI	GGCC	5 cut(s)	338, 364, 482, 659, 725
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	29
Bsp120I	GGGCCC	2 cut(s)	657, 723
Bsp1286I	GDGCHC	2 cut(s)	661, 727
Bsp143I	GATC	3 cut(s)	42, 369, 815
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	5 cut(s)	338, 364, 482, 659, 725
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	44, 659, 725
BspMAI	CTGCAG	3 cut(s)	412, 445, 555
BspMI	ACCTGC	2 cut(s)	509, 558
BspPI	GGATC	2 cut(s)	37, 50
BspTNI	GGTCTC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	333, 359
BssMI	GATC	3 cut(s)	42, 369, 815
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	335, 361, 479
Bst6I	CTCTTC	2 cut(s)	48, 86
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	3 cut(s)	143, 415, 601
BstDEI	CTNAG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstFNI	CGCG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	3 cut(s)	45, 372, 818
BstMAI	GTCTC	2 cut(s)	26, 283
BstMBI	GATC	3 cut(s)	42, 369, 815
BstNI	CCWGG	3 cut(s)	335, 361, 479
BstSCI	CCNGG	4 cut(s)	333, 359, 477, 725
BstSFI	CTRYAG	4 cut(s)	392, 408, 441, 551
BstSLI	GKGCMC	2 cut(s)	661, 727
BstUI	CGCG	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	5 cut(s)	338, 364, 482, 659, 725
BsuTUI	ATCGAT	1 cut(s)	237
BveI	ACCTGC	2 cut(s)	509, 558
Cac8I	GCNNGC	3 cut(s)	143, 415, 601
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	4 cut(s)	657, 658, 723, 724
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	16, 85
CviQI	GTAC	2 cut(s)	16, 85
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	44, 371, 817
DpnII	GATC	3 cut(s)	42, 369, 815
Eam1104I	CTCTTC	2 cut(s)	48, 86
EarI	CTCTTC	2 cut(s)	48, 86
Eco147I	AGGCCT	2 cut(s)	364, 482
Eco24I	GRGCYC	2 cut(s)	661, 727
Eco31I	GGTCTC	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoRII	CCWGG	3 cut(s)	333, 359, 477
EcoRV	GATATC	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	661, 727
FaiI	YATR	2 cut(s)	132, 590
FauI	CCCGC	1 cut(s)	429
FriOI	GRGCYC	2 cut(s)	661, 727
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	425
GsaI	CCCAGC	3 cut(s)	402, 471, 724
GsuI	CTGGAG	1 cut(s)	505
HaeIII	GGCC	5 cut(s)	338, 364, 482, 659, 725
HapII	CCGG	1 cut(s)	727
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	311, 807
HpaII	CCGG	1 cut(s)	727
Hpy166II	GTNNAC	2 cut(s)	16, 157
Hpy188I	TCNGA	2 cut(s)	369, 801
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	2 cut(s)	16, 157
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	6 cut(s)	603, 643, 703, 709, 759, 766
HpyCH4V	TGCA	9 cut(s)	250, 256, 410, 417, 443, 452, 504, 553, 564
HpyF3I	CTNAG	1 cut(s)	243
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	42, 369, 815
LmnI	GCTCC	1 cut(s)	451
LweI	GCATC	4 cut(s)	237, 259, 294, 513
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	44, 371, 817
MboI	GATC	3 cut(s)	42, 369, 815
MfeI	CAATTG	2 cut(s)	48, 150
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	661, 727
MluCI	AATT	4 cut(s)	48, 150, 193, 793
MmeI	TCCRAC	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	252
MseI	TTAA	1 cut(s)	820
MspI	CCGG	1 cut(s)	727
MspR9I	CCNGG	4 cut(s)	335, 361, 479, 727
MunI	CAATTG	2 cut(s)	48, 150
MvaI	CCWGG	3 cut(s)	335, 361, 479
MvnI	CGCG	1 cut(s)	424
NciI	CCSGG	1 cut(s)	727
NdeII	GATC	3 cut(s)	42, 369, 815
NlaIV	GGNNCC	3 cut(s)	44, 659, 725
NsiI	ATGCAT	1 cut(s)	252
PceI	AGGCCT	2 cut(s)	364, 482
PfeI	GAWTC	2 cut(s)	311, 807
Psp6I	CCWGG	3 cut(s)	333, 359, 477
PspFI	CCCAGC	3 cut(s)	398, 467, 720
PspGI	CCWGG	3 cut(s)	333, 359, 477
PspN4I	GGNNCC	3 cut(s)	44, 659, 725
PspOMI	GGGCCC	2 cut(s)	657, 723
PspPI	GGNCC	4 cut(s)	657, 658, 723, 724
PstI	CTGCAG	3 cut(s)	412, 445, 555
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	17, 86
RsaNI	GTAC	2 cut(s)	16, 85
SaqAI	TTAA	1 cut(s)	820
Sau3AI	GATC	3 cut(s)	42, 369, 815
Sau96I	GGNCC	4 cut(s)	657, 658, 723, 724
ScrFI	CCNGG	4 cut(s)	335, 361, 479, 727
SduI	GDGCHC	2 cut(s)	661, 727
SfaNI	GCATC	4 cut(s)	237, 259, 294, 513
SfcI	CTRYAG	4 cut(s)	392, 408, 441, 551
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	4 cut(s)	48, 150, 193, 793
SseBI	AGGCCT	2 cut(s)	364, 482
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	510
StuI	AGGCCT	2 cut(s)	364, 482
StyD4I	CCNGG	4 cut(s)	333, 359, 477, 725
TaqI	TCGA	2 cut(s)	237, 285
TasI	AATT	4 cut(s)	48, 150, 193, 793
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	311, 807
Tru1I	TTAA	1 cut(s)	820
Tru9I	TTAA	1 cut(s)	820
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	476
XspI	CTAG	1 cut(s)	510
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.