Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Reverse (-)

18218986 .. 18219442

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATAGACATGAAGTTTGGGCTCAGTGGAGTCGGATCCTTTACAAAAACTAAAGCTAATTGGATCTTGTTCTCGATCTGCGCATATGTAGCAGCATTTGCATGGTCTTGGGGCCCATTGGGGTGGTTGGTGCCGAGTGAAATTTGCCCTCTGGAGATCCGATCAGCTGGACAAGCCATCAACGTCTCGGTGAACATGTTGTTCACTTTTATCATTGGTCAAGTTTTCCTTAGCATGCTTTGCCACTTAAAATCGATCATTATGACCATCTTCATCGCCTTCTTCTGGCTCGAGACGAAGAATGTTCCGATTGAAGAGATGAATAAAGTTTGGAAAGCTCACTGGTTCTGGGGCAAGTACATCCCTGATGAGGCTGTCAACTATGGTAGGCAAGACAAAGTTGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

137

Amino Acids

15.55

Weight (kDa)

8.48

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	130
AclWI	GGATC	4 cut(s)	30, 43, 71, 151
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	285, 370
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	3 cut(s)	56, 167, 338
AluI	AGCT	3 cut(s)	56, 167, 338
Alw26I	GTCTC	2 cut(s)	190, 287
AlwI	GGATC	4 cut(s)	30, 43, 71, 151
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	112
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	141
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	112, 113
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	24, 116
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	185, 275
BcoDI	GTCTC	2 cut(s)	190, 287
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	112, 113
BmiI	GGNNCC	4 cut(s)	37, 113, 114, 132
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 370
Bse1I	ACTGG	1 cut(s)	347
BseCI	ATCGAT	1 cut(s)	254
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	285, 370
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	285, 370
BsmAI	GTCTC	2 cut(s)	190, 287
BsmBI	CGTCTC	2 cut(s)	190, 287
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	290
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	24, 116
Bsp143I	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	254
BspLI	GGNNCC	4 cut(s)	37, 113, 114, 132
BspPI	GGATC	4 cut(s)	30, 43, 71, 151
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
Bst6I	CTCTTC	1 cut(s)	309
BstAPI	GCANNNNNTGC	2 cut(s)	98, 240
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	23, 230
BstF5I	GGATG	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	6 cut(s)	38, 66, 78, 159, 164, 258
BstMAI	GTCTC	2 cut(s)	190, 287
BstMBI	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 98, 173, 240
BstNSI	RCATGY	2 cut(s)	199, 238
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	3 cut(s)	35, 63, 156
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	3 cut(s)	35, 63, 156
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	31, 340
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	112, 113
ClaI	ATCGAT	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	4 cut(s)	10, 102, 196, 235
CviJI	RGCY	8 cut(s)	22, 56, 114, 167, 176, 289, 338, 374
CviKI_1	RGCY	8 cut(s)	22, 56, 114, 167, 176, 289, 338, 374
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	23, 230
DpnI	GATC	6 cut(s)	37, 65, 77, 158, 163, 257
DpnII	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco24I	GRGCYC	2 cut(s)	24, 116
Eco88I	CYCGRG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT38I	GRGCYC	2 cut(s)	24, 116
Esp3I	CGTCTC	2 cut(s)	190, 287
FaeI	CATG	4 cut(s)	13, 105, 199, 238
FaiI	YATR	8 cut(s)	11, 85, 87, 103, 197, 236, 263, 384
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	4 cut(s)	9, 101, 195, 234
FauNDI	CATATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	24, 116
Fsp4HI	GCNGC	1 cut(s)	93
FspI	TGCGCA	1 cut(s)	82
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	13, 105, 199, 238
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	30
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	193, 204, 379
Hpy188I	TCNGA	3 cut(s)	35, 161, 309
Hpy188III	TCNNGA	3 cut(s)	73, 152, 292
Hpy8I	GTNNAC	3 cut(s)	193, 204, 379
HpyAV	CCTTC	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 98, 173, 240
HpyF3I	CTNAG	2 cut(s)	23, 230
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	13, 105, 199, 238
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
LpnPI	CCDG	6 cut(s)	137, 153, 271, 328, 334, 378
Lsp1109I	GCAGC	1 cut(s)	104
MaeII	ACGT	1 cut(s)	183
MalI	GATC	6 cut(s)	37, 65, 77, 158, 163, 257
MboI	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
MboII	GAAGA	4 cut(s)	262, 274, 310, 326
MflI	RGATCY	3 cut(s)	35, 63, 156
MhlI	GDGCHC	2 cut(s)	24, 116
MluCI	AATT	2 cut(s)	58, 141
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	159, 364
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	100, 121
MspA1I	CMGCKG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	89, 98, 173, 240
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
NlaIII	CATG	4 cut(s)	13, 105, 199, 238
NlaIV	GGNNCC	4 cut(s)	37, 113, 114, 132
NmeAIII	GCCGAG	1 cut(s)	159
NsbI	TGCGCA	1 cut(s)	82
NspI	RCATGY	2 cut(s)	199, 238
PaeI	GCATGC	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	290
PciI	ACATGT	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PscI	ACATGT	1 cut(s)	195
PspN4I	GGNNCC	4 cut(s)	37, 113, 114, 132
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	112, 113
PsuI	RGATCY	3 cut(s)	35, 63, 156
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	100, 121
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	6 cut(s)	35, 63, 75, 156, 161, 255
Sau96I	GGNCC	2 cut(s)	112, 113
SchI	GAGTC	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	24, 116
SetI	ASST	4 cut(s)	58, 169, 186, 340
Sfr274I	CTCGAG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	100, 121
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	2 cut(s)	58, 141
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	74, 254, 291
TasI	AATT	2 cut(s)	58, 141
TatI	WGTACW	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	31, 347
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	26, 262, 335
TspRI	CASTG	2 cut(s)	31, 347
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	2 cut(s)	199, 238
XhoI	CTCGAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.