Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Reverse (-)

49391143 .. 49392091

Gene Structure 949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG352800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGAGTTGATGCTTCCCTCATTTCTGCAGTCATCACTGGCACCGTTAATACCATCGCTACCTTGGTTTCAATCGCCACAGTTGATAAGATTGGAAGAAGAGCACTGTTCCTCGAAGGTGGTGTGCAAAAAATGATCATTTGTCAGATCGCTGTTGCCATCATGATTGCATTGAAGTTTGGCTTCCGTGGAGAAGGATCATTGGCAAAAGGCAAAGCCGATTTTCTCCTGTTCTTGATCTGTGCATGCGTAGCGGGATTTGCATGGTCTTGGGGTCTGTTGGGGTGGTTGGTGCCTAGTGAGATATGTCCTCTGGAAATCCGATCAGCTGGACAGGCCATCAATGTCTCGGTTAACATGTTATTCACTTTTATTATTGGCCAAGGCTTCCTCACCATGCTCTGCAAAATGAAGTTTGGTCTCTTCTTCTTCTTTGCTAGCTTTGTGATTATTATGACCATTTTCGTTGCGCTTCTTATGCTTGAGACAAAGAATGTTCCCATTGAAGAGATCAATGCAGTCTGGAAAGCTCAATGTTTTTGGGGCAAGTACATCCCGGATGATGTTGTTATTGATGCCAGACATACCAAAACTATAGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

201

Amino Acids

21.98

Weight (kDa)

8.56

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 175	1.9e-37	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 292
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	72, 175, 506
AluBI	AGCT	3 cut(s)	329, 441, 530
AluI	AGCT	3 cut(s)	329, 441, 530
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	3 cut(s)	352, 425, 479
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	2 cut(s)	336, 379
ArsI	GACNNNNNNTTYG	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	385
AsuNHI	GCTAGC	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	2 cut(s)	41, 292
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	3 cut(s)	62, 167, 347
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	3 cut(s)	352, 425, 479
BfaI	CTAG	2 cut(s)	297, 438
BfmI	CTRYAG	2 cut(s)	27, 594
Bme1390I	CCNGG	1 cut(s)	557
BmiI	GGNNCC	2 cut(s)	43, 294
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	565
BmtI	GCTAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	63, 187, 382
Bse1I	ACTGG	2 cut(s)	43, 601
BseDI	CCNNGG	3 cut(s)	63, 187, 382
BseGI	GGATG	2 cut(s)	552, 565
BseNI	ACTGG	2 cut(s)	43, 601
BshFI	GGCC	2 cut(s)	338, 381
BshNI	GGYRCC	2 cut(s)	41, 292
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	557
BsmAI	GTCTC	3 cut(s)	352, 425, 479
BsnI	GGCC	2 cut(s)	338, 381
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	338, 381
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	43, 294
BspMAI	CTGCAG	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	94
BspT107I	GGYRCC	2 cut(s)	41, 292
BspTNI	GGTCTC	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	43, 601
BssECI	CCNNGG	3 cut(s)	63, 187, 382
BssMI	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
BssT1I	CCWWGG	2 cut(s)	63, 382
Bst4CI	ACNGT	3 cut(s)	46, 82, 108
Bst6I	CTCTTC	3 cut(s)	94, 428, 501
BstC8I	GCNNGC	2 cut(s)	247, 439
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	552, 565
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	6 cut(s)	138, 150, 200, 240, 326, 513
BstMAI	GTCTC	3 cut(s)	352, 425, 479
BstMBI	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 260, 335, 478
BstNSI	RCATGY	2 cut(s)	249, 361
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	2 cut(s)	27, 594
BsuRI	GGCC	2 cut(s)	338, 381
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	552, 565
BtsIMutI	CAGTG	2 cut(s)	36, 104
Cac8I	GCNNGC	2 cut(s)	247, 439
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	5 cut(s)	163, 246, 264, 358, 397
CviJI	RGCY	8 cut(s)	183, 218, 329, 338, 381, 387, 441, 530
CviKI_1	RGCY	8 cut(s)	183, 218, 329, 338, 381, 387, 441, 530
CviQI	GTAC	1 cut(s)	550
DpnI	GATC	6 cut(s)	137, 149, 199, 239, 325, 512
DpnII	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	3 cut(s)	94, 428, 501
EarI	CTCTTC	3 cut(s)	94, 428, 501
Eco130I	CCWWGG	2 cut(s)	63, 382
Eco31I	GGTCTC	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	63, 382
ErhI	CCWWGG	2 cut(s)	63, 382
FaeI	CATG	5 cut(s)	166, 249, 267, 361, 400
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	5 cut(s)	162, 245, 263, 357, 396
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	135
FokI	GGATG	2 cut(s)	539, 572
FspBI	CTAG	2 cut(s)	297, 438
GlaI	GCGC	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	338, 381
HapII	CCGG	1 cut(s)	557
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	5 cut(s)	166, 249, 267, 361, 400
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	147, 323
Hpy188III	TCNNGA	4 cut(s)	163, 235, 314, 523
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	110, 188
HpyCH4III	ACNGT	3 cut(s)	46, 82, 108
HpyCH4V	TGCA	7 cut(s)	29, 127, 170, 245, 263, 405, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 260, 335, 478
Hsp92II	CATG	5 cut(s)	166, 249, 267, 361, 400
HspAI	GCGC	1 cut(s)	470
Ksp22I	TGATCA	1 cut(s)	135
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
LguI	GCTCTTC	1 cut(s)	94
LpnPI	CCDG	8 cut(s)	24, 242, 299, 315, 320, 508, 570, 592
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	297, 438
MalI	GATC	6 cut(s)	137, 149, 199, 239, 325, 512
MboI	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
MboII	GAAGA	6 cut(s)	108, 111, 415, 418, 421, 518
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MnlI	CCTC	4 cut(s)	29, 122, 321, 401
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	48, 354
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	4 cut(s)	251, 260, 335, 478
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	5 cut(s)	166, 249, 267, 361, 400
NlaIV	GGNNCC	2 cut(s)	43, 294
NspI	RCATGY	2 cut(s)	249, 361
PaeI	GCATGC	1 cut(s)	249
PagI	TCATGA	1 cut(s)	162
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	555
PscI	ACATGT	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	43, 294
PstI	CTGCAG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	48, 354
Sau3AI	GATC	6 cut(s)	135, 147, 197, 237, 323, 510
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	5 cut(s)	65, 121, 331, 443, 532
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	2 cut(s)	27, 594
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	249
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	2 cut(s)	297, 438
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	2 cut(s)	63, 382
TaaI	ACNGT	3 cut(s)	46, 82, 108
TaqI	TCGA	1 cut(s)	114
TatI	WGTACW	1 cut(s)	549
Tru1I	TTAA	2 cut(s)	48, 354
Tru9I	TTAA	2 cut(s)	48, 354
TscAI	CASTG	2 cut(s)	43, 111
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	43, 111
XceI	RCATGY	2 cut(s)	249, 361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	2 cut(s)	297, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.