Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Forward (+)

14059295 .. 14060013

Gene Structure 719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTTTATGCACCAGTTCTTTTTAAGACTTTAGGCATGGGAGATGATGCTTCCCTCATCTCTGCTGTTATCACCGGCTGTGTCAATGTCATCGCTACCTTCATCTCAGTAATGACCGTTGATAGGTTTGGAAGACGGGTATTGTTCCTTGAAGGTGGTGTGCAAATGATCCTTTGTCAGATTGGTGTTGCAGTCATAATTGGGTTGAAGTATGGTGTGAGTGGAGTAGGATCATTGACAAAAGGCGAAGCTGATATCGTTCTCGTCTTTATCTGCATATACGTCGCCGGTTTTGCATGGTCTTGGGGAGCACTGGGGTGGTTGGTGCCTAGTGAGATCTGTCCTCTAGAGATACGATCGGCTGGACAAGCCATCAATGTTTCCGTTAACATGCTATTCACTTTTATCATTGCCCAATGTTTTCTCTCCATGCTTTGCTACATGAAGTTTGGTCTCTTCATCTTCTTTGCTGCCTTCGTCACTATTATGTCCATTTTCATTGCCCTCTTCATGCCTGAGACGAAGTGTGTTCCCATTGAAGAGATTAATACAGTGTGGAAAGCACATTGGTTTTGGGGCAAGTACATCCCCGATGATGCTGTTATTGATGGTACGCACGGGAGGCCTGTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

211

Amino Acids

23.15

Weight (kDa)

5.61

Isoelectric Point (pI)

31.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 186	1.8e-47	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AclWI	GGATC	2 cut(s)	163, 238
AfaI	GTAC	2 cut(s)	584, 613
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	152, 208, 539
AleI	CACNNNNGTG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	458, 512
AlwI	GGATC	2 cut(s)	163, 238
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	1 cut(s)	470
AseI	ATTAAT	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	380, 602
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BcoDI	GTCTC	2 cut(s)	458, 512
BfaI	CTAG	2 cut(s)	330, 347
BfmI	CTRYAG	1 cut(s)	627
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
BmiI	GGNNCC	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	37, 586
BmuI	ACTGGG	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	2 cut(s)	74, 287
Bse1I	ACTGG	2 cut(s)	14, 318
Bse3DI	GCAATG	2 cut(s)	408, 498
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	2 cut(s)	408, 498
BseMII	CTCAG	2 cut(s)	120, 507
BseNI	ACTGG	2 cut(s)	14, 318
BseXI	GCAGC	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	625
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	75, 288
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	458, 512
BsmBI	CGTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	625
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	168, 230, 336, 356
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	2 cut(s)	119, 508
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	163, 238
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	408, 498
BsrFI	RCCGGY	2 cut(s)	74, 287
BsrI	ACTGG	2 cut(s)	14, 318
BssAI	RCCGGY	2 cut(s)	74, 287
BssMI	GATC	4 cut(s)	168, 230, 336, 356
Bst4CI	ACNGT	2 cut(s)	118, 553
Bst6I	CTCTTC	3 cut(s)	461, 512, 534
BstDEI	CTNAG	2 cut(s)	106, 516
BstF5I	GGATG	1 cut(s)	585
BstKTI	GATC	4 cut(s)	171, 233, 339, 359
BstMAI	GTCTC	2 cut(s)	458, 512
BstMBI	GATC	4 cut(s)	168, 230, 336, 356
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 368, 622
BstNSI	RCATGY	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	625
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	311, 558
Cfr10I	RCCGGY	2 cut(s)	74, 287
Csp6I	GTAC	2 cut(s)	583, 612
CviAII	CATG	6 cut(s)	37, 297, 391, 430, 442, 511
CviJI	RGCY	5 cut(s)	78, 251, 362, 371, 625
CviKI_1	RGCY	5 cut(s)	78, 251, 362, 371, 625
CviQI	GTAC	2 cut(s)	583, 612
DdeI	CTNAG	2 cut(s)	106, 516
DpnI	GATC	4 cut(s)	170, 232, 338, 358
DpnII	GATC	4 cut(s)	168, 230, 336, 356
Eam1104I	CTCTTC	3 cut(s)	461, 512, 534
EarI	CTCTTC	3 cut(s)	461, 512, 534
Eco147I	AGGCCT	1 cut(s)	625
Eco31I	GGTCTC	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	6 cut(s)	40, 300, 394, 433, 445, 514
FatI	CATG	6 cut(s)	36, 296, 390, 429, 441, 510
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	330, 347
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	2 cut(s)	75, 288
Hin1II	CATG	6 cut(s)	40, 300, 394, 433, 445, 514
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	75, 288
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	109, 146, 484
HpyCH4III	ACNGT	2 cut(s)	118, 553
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	5 cut(s)	11, 163, 191, 276, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 368, 622
HpyF3I	CTNAG	2 cut(s)	106, 516
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	40, 300, 394, 433, 445, 514
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	168, 230, 336, 356
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	6 cut(s)	27, 88, 299, 301, 348, 528
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	37, 586
MaeI	CTAG	2 cut(s)	330, 347
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	4 cut(s)	170, 232, 338, 358
MboI	GATC	4 cut(s)	168, 230, 336, 356
MboII	GAAGA	5 cut(s)	144, 448, 454, 499, 551
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	4 cut(s)	65, 354, 515, 615
MseI	TTAA	3 cut(s)	24, 387, 546
MslI	CAYNNNNRTG	2 cut(s)	316, 485
MspI	CCGG	2 cut(s)	75, 288
MwoI	GCNNNNNNNGC	3 cut(s)	293, 368, 622
NdeII	GATC	4 cut(s)	168, 230, 336, 356
NlaIII	CATG	6 cut(s)	40, 300, 394, 433, 445, 514
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	1 cut(s)	394
OliI	CACNNNNGTG	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	472
Ple19I	CGATCG	1 cut(s)	359
PshBI	ATTAAT	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	336
PvuI	CGATCG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	584, 613
RsaNI	GTAC	2 cut(s)	583, 612
RseI	CAYNNNNRTG	2 cut(s)	316, 485
SaqAI	TTAA	3 cut(s)	24, 387, 546
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	4 cut(s)	168, 230, 336, 356
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	5 cut(s)	101, 128, 157, 253, 285
SfaNI	GCATC	2 cut(s)	37, 586
SfcI	CTRYAG	1 cut(s)	627
SmiMI	CAYNNNNRTG	2 cut(s)	316, 485
Sse9I	AATT	1 cut(s)	198
SseBI	AGGCCT	1 cut(s)	625
SspMI	CTAG	2 cut(s)	330, 347
StuI	AGGCCT	1 cut(s)	625
TaaI	ACNGT	2 cut(s)	118, 553
TaiI	ACGT	1 cut(s)	285
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	582
Tru1I	TTAA	3 cut(s)	24, 387, 546
Tru9I	TTAA	3 cut(s)	24, 387, 546
TscAI	CASTG	2 cut(s)	318, 558
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	5 cut(s)	91, 448, 458, 487, 499
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	2 cut(s)	318, 558
VspI	ATTAAT	1 cut(s)	546
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	2 cut(s)	330, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.