Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005544

Physical Location & Seq

Genomic Coordinates Reverse (-)

21267197 .. 21268759

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1099000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACTTACAGGTTGAGAATATCAAATGTGGGGAATGCTATGAGTTTCAATTTCAGGATTCGAAACCATCAAATGGTGTTGGTTGAAACAGAAGGATCTTGCACTGATCAGTTCGCTTTGGATTCTCTGGATGTGCATGTCGGCCAATCATGCTTGGTTCTCGTCACAGCTAACCAAAATGCAGCTGATTATTACATGGTGGCATCTAAGTTGGTCAACACCTCTGAATTTACTAACCTTGTGGGCAATGGGGTCTTGCACTACTCCAATTCAGTCTCACAAGTTAGTGGTCCCCTGCCTGAAGGCCCTGATCCTTTTGATCTTGATTTCTCAGTCGATCAAGCGAAGTCTATTAGGTGGAACTTGACTGCAGGAGCTGCTAGGCCTAATCCACAAGGAACCTTCAATGTGTCAAATGTGACCCTATCCCAAACGTTGATCCTCCAAGGTTCCGTAGCTAACATTAATGGTGAACCGCGTTATGTTGTCAACAATGTGTCATATAGAACTCCGGAAACCCCGTTGAAACTCGCTGATTACTATGTCAATGGCACCGGTGTGTACCAACTTGATGCTTTTCGGGTTCATTATCTCAATGACGATGCGGCATACGGAGTGTCCGTCGTGACCGGAATCCACAAAGGGTGGATAGAAATTGTGTTCATGAACAATCTGGATGCCATTGATTCTTGGAATTTAGATGGTTTTGGATTTTACGTCGTTGGGTTTGGGAACGGAGATTGGTCAACGGATTCACGCAACACATACAACCTCTACGATCCTGATGTGAGATCAACAGTTCAAGTGTACCCCGGACGATGGACTGCAGTTTATGCATTCCTTGACAACCCTGGGATGTGGAACTTGCGGTCACGACCGTTGAAGCACTGGTACTTAGGGCAAGAACTCTATGTGAGAGTTTATGATGCTGACCCCCTAACCCAGCTAAGGAGCTCCCACCACCCCAAAACCTGCTTCGATGTGGTTAGTGCATTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

334

Amino Acids

37.27

Weight (kDa)

5.39

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	2 - 91	8.8e-26	Multicopper oxidase
Cu-oxidase_2	PF07731	201 - 310	3.4e-23	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18341 FvH4_7g18350
malus_domestica	MD01G1098800.v1.1 MD01G1099000.v1.1 MD07G1165500.v1.1 MD07G1165800.v1.1
prunus_persica	Prupe.2G205500_v2.0.a1 Prupe.2G205600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362061 RchiOBHm_Chr1g0362091 RchiOBHm_Chr7g0206161
rosa_laevigata	RLG00000027672 RLG00000027676
rosa_multiflora	Rmu_co8403161.1_g000001 Rmu_sc0010614.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294510 Rroxscaffold_4G00294540
rosa_rugosa	Rorug01G0293200 Rorug01G0293600
rosa_samantha	Rh1BG266700 Rh1BG267000 Rh1CG284800 Rh1CG285100 Rh1DG296700 Rh1DG297100 Rh7DG233000
rosa_wichuraiana	Rw1G027020 Rw1G027050 Rw7G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	980
AccB1I	GGYRCC	1 cut(s)	551
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccII	CGCG	1 cut(s)	478
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	3 cut(s)	476, 605, 868
AclI	AACGTT	1 cut(s)	434
AclWI	GGATC	4 cut(s)	103, 305, 433, 773
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	227, 694
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	563, 809, 893
AfiI	CCNNNNNNNGG	3 cut(s)	73, 819, 948
AgeI	ACCGGT	1 cut(s)	554
AgsI	TTSAA	6 cut(s)	49, 86, 406, 526, 803, 883
AjnI	CCWGG	1 cut(s)	850
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AleI	CACNNNNGTG	1 cut(s)	557
AluBI	AGCT	6 cut(s)	170, 185, 377, 458, 946, 954
AluI	AGCT	6 cut(s)	170, 185, 377, 458, 946, 954
Alw21I	GWGCWC	1 cut(s)	956
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	4 cut(s)	103, 305, 433, 773
AlwNI	CAGNNNCTG	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	3 cut(s)	142, 304, 383
ApeKI	GCWGC	2 cut(s)	182, 377
ApoI	RAATTY	2 cut(s)	227, 694
AseI	ATTAAT	1 cut(s)	465
AsiGI	ACCGGT	1 cut(s)	554
AspS9I	GGNCC	2 cut(s)	290, 305
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	1 cut(s)	482
AsuII	TTCGAA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	956
BarI	GAAGNNNNNNTAC	2 cut(s)	875, 907
Bbv12I	GWGCWC	1 cut(s)	956
BbvI	GCAGC	2 cut(s)	194, 364
BccI	CCATC	3 cut(s)	75, 695, 813
BciT130I	CCWGG	1 cut(s)	852
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	369, 825
BfuAI	ACCTGC	1 cut(s)	980
BisI	GCNGC	3 cut(s)	183, 378, 606
BlsI	GCNGC	3 cut(s)	184, 379, 607
Bme1390I	CCNGG	2 cut(s)	813, 852
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 305
BmiI	GGNNCC	4 cut(s)	292, 400, 451, 553
BmrFI	CCNGG	2 cut(s)	813, 852
BmsI	GCATC	5 cut(s)	212, 562, 592, 667, 916
Bpu10I	CCTNAGC	1 cut(s)	947
Bpu14I	TTCGAA	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	813
BsaJI	CCNNGG	4 cut(s)	445, 811, 850, 851
BsaWI	WCCGGW	3 cut(s)	511, 554, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 819, 948
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	893
Bse3DI	GCAATG	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	4 cut(s)	445, 811, 850, 851
BseGI	GGATG	3 cut(s)	136, 682, 861
BseLI	CCNNNNNNNGG	3 cut(s)	73, 819, 948
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	893
BseXI	GCAGC	2 cut(s)	194, 364
BseYI	CCCAGC	1 cut(s)	942
Bsh1236I	CGCG	1 cut(s)	478
Bsh1285I	CGRYCG	1 cut(s)	878
BshFI	GGCC	3 cut(s)	144, 306, 385
BshNI	GGYRCC	1 cut(s)	551
BshTI	ACCGGT	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	878
BsiHKAI	GWGCWC	1 cut(s)	956
BsiSI	CCGG	4 cut(s)	512, 555, 630, 813
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	73, 819, 948
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	276
BsmI	GAATGC	3 cut(s)	40, 836, 992
BsnI	GGCC	3 cut(s)	144, 306, 385
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	956
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
BspACI	CCGC	3 cut(s)	476, 605, 868
BspANI	GGCC	3 cut(s)	144, 306, 385
BspCNI	CTCAG	1 cut(s)	344
BspEI	TCCGGA	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	4 cut(s)	292, 400, 451, 553
BspMAI	CTGCAG	2 cut(s)	373, 829
BspMI	ACCTGC	1 cut(s)	980
BspPI	GGATC	4 cut(s)	103, 305, 433, 773
BspT104I	TTCGAA	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	893
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	4 cut(s)	445, 811, 850, 851
BssMI	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	2 cut(s)	799, 879
BstAPI	GCANNNNNTGC	2 cut(s)	377, 833
BstBI	TTCGAA	1 cut(s)	61
BstDEI	CTNAG	4 cut(s)	207, 331, 895, 947
BstF5I	GGATG	3 cut(s)	136, 682, 861
BstFNI	CGCG	1 cut(s)	478
BstKTI	GATC	8 cut(s)	98, 109, 313, 322, 340, 441, 781, 794
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
BstMCI	CGRYCG	1 cut(s)	878
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 377, 833
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	811, 850
BstSFI	CTRYAG	2 cut(s)	369, 825
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	194, 364
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	144, 306, 385
BtsCI	GGATG	3 cut(s)	136, 682, 861
BtsIMutI	CAGTG	2 cut(s)	102, 886
BveI	ACCTGC	1 cut(s)	980
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	2 cut(s)	290, 305
Csp6I	GTAC	3 cut(s)	562, 808, 892
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	4 cut(s)	137, 150, 196, 664
CviJI	RGCY	9 cut(s)	144, 170, 185, 306, 377, 385, 458, 946, 954
CviKI_1	RGCY	9 cut(s)	144, 170, 185, 306, 377, 385, 458, 946, 954
CviQI	GTAC	3 cut(s)	562, 808, 892
DdeI	CTNAG	4 cut(s)	207, 331, 895, 947
DpnI	GATC	8 cut(s)	97, 108, 312, 321, 339, 440, 780, 793
DpnII	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
EaeI	YGGCCR	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	954
Eco130I	CCWWGG	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	956
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	954
Eco57I	CTGAAG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	954
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	838
EcoT38I	GRGCYC	1 cut(s)	956
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	4 cut(s)	140, 153, 199, 667
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	4 cut(s)	136, 149, 195, 663
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	183, 378, 606
FokI	GGATG	3 cut(s)	143, 689, 868
FriOI	GRGCYC	1 cut(s)	956
Fsp4HI	GCNGC	3 cut(s)	183, 378, 606
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	183, 378, 606
GsaI	CCCAGC	1 cut(s)	946
HaeIII	GGCC	3 cut(s)	144, 306, 385
HapII	CCGG	4 cut(s)	512, 555, 630, 813
Hin1II	CATG	4 cut(s)	140, 153, 199, 667
HincII	GTYRAC	3 cut(s)	217, 490, 747
HindII	GTYRAC	3 cut(s)	217, 490, 747
HinfI	GANTC	5 cut(s)	58, 122, 633, 686, 752
HpaII	CCGG	4 cut(s)	512, 555, 630, 813
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	6 cut(s)	217, 473, 490, 562, 747, 808
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	9 cut(s)	55, 128, 323, 512, 625, 664, 674, 782, 873
Hpy8I	GTNNAC	6 cut(s)	217, 473, 490, 562, 747, 808
Hpy99I	CGWCG	2 cut(s)	626, 722
HpyAV	CCTTC	3 cut(s)	86, 296, 412
HpyCH4III	ACNGT	2 cut(s)	799, 879
HpyCH4IV	ACGT	2 cut(s)	434, 717
HpyCH4V	TGCA	8 cut(s)	102, 136, 182, 259, 371, 827, 836, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 377, 833
HpyF3I	CTNAG	4 cut(s)	207, 331, 895, 947
HpySE526I	ACGT	2 cut(s)	434, 717
Hsp92II	CATG	4 cut(s)	140, 153, 199, 667
Kpn2I	TCCGGA	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
LmnI	GCTCC	3 cut(s)	374, 951, 959
Lsp1109I	GCAGC	2 cut(s)	194, 364
LweI	GCATC	5 cut(s)	212, 562, 592, 667, 916
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	434, 717
MaeIII	GTNAC	4 cut(s)	163, 418, 625, 870
MalI	GATC	8 cut(s)	97, 108, 312, 321, 339, 440, 780, 793
MboI	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	956
MluCI	AATT	5 cut(s)	49, 227, 268, 654, 694
MnlI	CCTC	3 cut(s)	232, 452, 782
Mph1103I	ATGCAT	1 cut(s)	838
MroI	TCCGGA	1 cut(s)	511
MseI	TTAA	2 cut(s)	465, 1000
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	4 cut(s)	512, 555, 630, 813
MspR9I	CCNGG	2 cut(s)	813, 852
Mva1269I	GAATGC	3 cut(s)	40, 836, 992
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	150, 377, 833
NciI	CCSGG	1 cut(s)	813
NdeII	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
NlaIII	CATG	4 cut(s)	140, 153, 199, 667
NlaIV	GGNNCC	4 cut(s)	292, 400, 451, 553
NmuCI	GTSAC	4 cut(s)	163, 418, 625, 870
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	557
PagI	TCATGA	1 cut(s)	663
PasI	CCCWGGG	1 cut(s)	851
PceI	AGGCCT	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	3 cut(s)	40, 836, 992
PfeI	GAWTC	5 cut(s)	58, 122, 633, 686, 752
PflMI	CCANNNNNTGG	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	184, 379, 607
PshBI	ATTAAT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	956
Psp1406I	AACGTT	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	850
PspFI	CCCAGC	1 cut(s)	942
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	4 cut(s)	292, 400, 451, 553
PspPI	GGNCC	2 cut(s)	290, 305
PstI	CTGCAG	2 cut(s)	373, 829
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	3 cut(s)	563, 809, 893
RsaNI	GTAC	3 cut(s)	562, 808, 892
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	956
SaqAI	TTAA	2 cut(s)	465, 1000
SatI	GCNGC	3 cut(s)	183, 378, 606
Sau3AI	GATC	8 cut(s)	95, 106, 310, 319, 337, 438, 778, 791
Sau96I	GGNCC	2 cut(s)	290, 305
ScrFI	CCNGG	2 cut(s)	813, 852
SduI	GDGCHC	1 cut(s)	956
SfaNI	GCATC	5 cut(s)	212, 562, 592, 667, 916
SfcI	CTRYAG	2 cut(s)	369, 825
SfuI	TTCGAA	1 cut(s)	61
SgrAI	CRCCGGYG	1 cut(s)	554
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	557
Sse9I	AATT	5 cut(s)	49, 227, 268, 654, 694
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	3 cut(s)	476, 605, 868
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	956
StuI	AGGCCT	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	811, 850
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	799, 879
TaiI	ACGT	2 cut(s)	437, 720
TaqI	TCGA	3 cut(s)	61, 336, 978
TasI	AATT	5 cut(s)	49, 227, 268, 654, 694
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	5 cut(s)	58, 122, 633, 686, 752
Tru1I	TTAA	2 cut(s)	465, 1000
Tru9I	TTAA	2 cut(s)	465, 1000
TscAI	CASTG	2 cut(s)	109, 893
TseFI	GTSAC	4 cut(s)	163, 418, 625, 870
TseI	GCWGC	2 cut(s)	182, 377
Tsp45I	GTSAC	4 cut(s)	163, 418, 625, 870
TspDTI	ATGAA	3 cut(s)	575, 652, 680
TspGWI	ACGGA	5 cut(s)	442, 610, 627, 750, 764
TspRI	CASTG	2 cut(s)	109, 893
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	290
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	227, 694
XceI	RCATGY	1 cut(s)	140
XspI	CTAG	1 cut(s)	381
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.