Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005544

Physical Location & Seq

Genomic Coordinates Reverse (-)

23821894 .. 23823217

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTGCTGGTTGAAACAAAAGGATCCTATACTAATGAAATCAACTTGGATTCTCTTGATGTACATGTTGGACAGTCCTACTCTGTGCTTGTCACAGCTGATCAAGCCACTTCAGACTATTACATGGTAGCAACTCCTAAATTGCTTAAAATCACAGATATGACCAAATTTGGAATTGGTGTGCTGCACTATGATAACTCCACCACAGATGTTAGTGGACCACTACTAATTGGCCCTGACCCTTTTGATATAGAACTATCCACCAGTCAAGCCAACTCCATCAGGTGGAACCTGACTACAAGGGCAGCAAGGCCTAATCCACAAGGATCCTTCAACGTTCATAATGTGACACTATCACAGACATTCATACTAAGTGCATCAACAGCAGAGATTGATGGTGCACCCAAGTTTACTGTCAACAATGTGTCTTACTTGACCCCAGATACACCATTGAAGTTGGCTGATCACTTGGTCAACGGTTCTGGAGTTTACGAGCTTGATGAATTCTCTACTAACTCTACAAATATTAAATCTGAGAGTGGAGTTTTTGTTGCAAGTGGGATACACAAAGGGTGGATAGAACTTGTTTTGCACAATGATTTGGAGGTCATGGACTCTTGGCATTTAGATGGCTTCGGATTCTTTGTTGTTGGCTACGGCCGTGGAAAGTGGAGTGCTAAGTCGTGCTCAACCTACAACCTTTATGATCCAGTGGTGCGTTCTACTGTACAAGTGTACGCACAGAGGTGGAGTGCAGTTTATGCATACCTTGACAACACTGGAATGTGGAATTTGAGGTCACAGCACTTGAAAAATTGGTATTTGGGTGAAGAGCTATATGTGAGAGTTTATGATGCTGATCCCAACCCTGCAAAAGAGAGGCCTTCCCCTAATAACATTCTTCTTTGTGGTCAGCCTCATTGTTTGTTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

311

Amino Acids

34.57

Weight (kDa)

5.3

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	1 - 66	4.5e-14	Multicopper oxidase
Cu-oxidase_2	PF07731	149 - 286	3.3e-26	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18341 FvH4_7g18350
malus_domestica	MD01G1098800.v1.1 MD01G1099000.v1.1 MD07G1165500.v1.1 MD07G1165800.v1.1
prunus_persica	Prupe.2G205500_v2.0.a1 Prupe.2G205600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362061 RchiOBHm_Chr1g0362091 RchiOBHm_Chr7g0206161
rosa_laevigata	RLG00000027672 RLG00000027676
rosa_multiflora	Rmu_co8403161.1_g000001 Rmu_sc0010614.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294510 Rroxscaffold_4G00294540
rosa_rugosa	Rorug01G0293200 Rorug01G0293600
rosa_samantha	Rh1BG266700 Rh1BG267000 Rh1CG284800 Rh1CG285100 Rh1DG296700 Rh1DG297100 Rh7DG233000
rosa_wichuraiana	Rw1G027020 Rw1G027050 Rw7G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	285
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	6 cut(s)	18, 31, 321, 334, 701, 854
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	3 cut(s)	167, 503, 790
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	3 cut(s)	63, 729, 737
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	14, 334, 454, 811
AleI	CACNNNNGTG	1 cut(s)	745
AluBI	AGCT	3 cut(s)	98, 496, 835
AluI	AGCT	3 cut(s)	98, 496, 835
Alw21I	GWGCWC	2 cut(s)	403, 689
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	6 cut(s)	18, 31, 321, 334, 701, 854
AoxI	GGCC	4 cut(s)	232, 311, 658, 881
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	184, 305
ApoI	RAATTY	3 cut(s)	167, 503, 790
AspS9I	GGNCC	2 cut(s)	218, 233
AsuHPI	GGTGA	1 cut(s)	839
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	403
BamHI	GGATCC	2 cut(s)	23, 326
Bbv12I	GWGCWC	2 cut(s)	403, 689
BbvI	GCAGC	2 cut(s)	171, 317
BccI	CCATC	3 cut(s)	287, 389, 623
BceAI	ACGGC	2 cut(s)	645, 673
BciVI	GTATCC	1 cut(s)	555
BclI	TGATCA	2 cut(s)	100, 463
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	185, 306
BlsI	GCNGC	2 cut(s)	186, 307
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	218, 233
BmiI	GGNNCC	3 cut(s)	25, 290, 328
BmsI	GCATC	2 cut(s)	386, 844
BpmI	CTGGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	3 cut(s)	264, 710, 784
Bse8I	GATNNNNATC	1 cut(s)	858
BseDI	CCNNGG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	3 cut(s)	264, 710, 784
BseSI	GKGCMC	1 cut(s)	403
BseX3I	CGGCCG	1 cut(s)	658
BseXI	GCAGC	2 cut(s)	171, 317
BsgI	GTGCAG	2 cut(s)	170, 774
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	4 cut(s)	234, 313, 660, 883
BsiEI	CGRYCG	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	403, 689
BslI	CCNNNNNNNGG	1 cut(s)	285
BsnI	GGCC	4 cut(s)	234, 313, 660, 883
Bsp1286I	GDGCHC	2 cut(s)	403, 689
Bsp1407I	TGTACA	2 cut(s)	61, 727
Bsp143I	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
BspANI	GGCC	4 cut(s)	234, 313, 660, 883
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	25, 290, 328
BspPI	GGATC	6 cut(s)	18, 31, 321, 334, 701, 854
BspQI	GCTCTTC	1 cut(s)	825
BsrGI	TGTACA	2 cut(s)	61, 727
BsrI	ACTGG	3 cut(s)	264, 710, 784
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
Bst4CI	ACNGT	4 cut(s)	75, 415, 479, 727
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	2 cut(s)	61, 727
BstDEI	CTNAG	3 cut(s)	371, 534, 678
BstDSI	CCRYGG	1 cut(s)	661
BstKTI	GATC	6 cut(s)	26, 103, 329, 466, 709, 862
BstMBI	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 383, 761
BstNSI	RCATGY	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	171, 317
BstX2I	RGATCY	2 cut(s)	23, 326
BstYI	RGATCY	2 cut(s)	23, 326
BstZI	CGGCCG	1 cut(s)	658
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	234, 313, 660, 883
BtgI	CCRYGG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	717, 777
Cfr13I	GGNCC	2 cut(s)	218, 233
Csp6I	GTAC	3 cut(s)	62, 728, 736
CviAII	CATG	3 cut(s)	65, 124, 610
CviQI	GTAC	3 cut(s)	62, 728, 736
DdeI	CTNAG	3 cut(s)	371, 534, 678
DpnI	GATC	6 cut(s)	25, 102, 328, 465, 708, 861
DpnII	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
EaeI	YGGCCR	1 cut(s)	658
EagI	CGGCCG	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
EclXI	CGGCCG	1 cut(s)	658
Eco147I	AGGCCT	2 cut(s)	313, 883
Eco47I	GGWCC	1 cut(s)	218
Eco52I	CGGCCG	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	766
FaeI	CATG	3 cut(s)	68, 127, 613
FatI	CATG	3 cut(s)	64, 123, 609
FbaI	TGATCA	2 cut(s)	100, 463
Fnu4HI	GCNGC	2 cut(s)	185, 306
Fsp4HI	GCNGC	2 cut(s)	185, 306
GluI	GCNGC	2 cut(s)	185, 306
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	4 cut(s)	234, 313, 660, 883
Hin1II	CATG	3 cut(s)	68, 127, 613
HincII	GTYRAC	2 cut(s)	418, 475
HindII	GTYRAC	2 cut(s)	418, 475
HinfI	GANTC	3 cut(s)	50, 614, 639
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	7 cut(s)	218, 401, 411, 418, 475, 490, 736
Hpy188I	TCNGA	3 cut(s)	115, 535, 638
Hpy188III	TCNNGA	2 cut(s)	56, 483
Hpy8I	GTNNAC	7 cut(s)	218, 401, 411, 418, 475, 490, 736
HpyAV	CCTTC	2 cut(s)	340, 894
HpyCH4III	ACNGT	4 cut(s)	75, 415, 479, 727
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	8 cut(s)	187, 377, 401, 554, 592, 755, 764, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 383, 761
HpyF3I	CTNAG	3 cut(s)	371, 534, 678
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	68, 127, 613
Ksp22I	TGATCA	2 cut(s)	100, 463
Kzo9I	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
LguI	GCTCTTC	1 cut(s)	825
LpnPI	CCDG	9 cut(s)	249, 268, 277, 305, 453, 468, 723, 765, 882
Lsp1109I	GCAGC	2 cut(s)	171, 317
LweI	GCATC	2 cut(s)	386, 844
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	91, 346, 798
MalI	GATC	6 cut(s)	25, 102, 328, 465, 708, 861
MboI	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
MboII	GAAGA	2 cut(s)	842, 893
MflI	RGATCY	2 cut(s)	23, 326
MhlI	GDGCHC	2 cut(s)	403, 689
MluCI	AATT	7 cut(s)	140, 167, 174, 228, 503, 790, 814
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	598, 738, 789, 873, 927
Mph1103I	ATGCAT	1 cut(s)	766
MseI	TTAA	3 cut(s)	147, 528, 929
MslI	CAYNNNNRTG	4 cut(s)	158, 627, 745, 782
MspA1I	CMGCKG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	104, 383, 761
NdeII	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
NlaIII	CATG	3 cut(s)	68, 127, 613
NlaIV	GGNNCC	3 cut(s)	25, 290, 328
NmuCI	GTSAC	3 cut(s)	91, 346, 798
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	745
PceI	AGGCCT	2 cut(s)	313, 883
PciI	ACATGT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	50, 639
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	186, 307
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PscI	ACATGT	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	25, 290, 328
PspPI	GGNCC	2 cut(s)	218, 233
PsuI	RGATCY	2 cut(s)	23, 326
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	3 cut(s)	63, 729, 737
RsaNI	GTAC	3 cut(s)	62, 728, 736
RseI	CAYNNNNRTG	4 cut(s)	158, 627, 745, 782
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	147, 528, 929
SatI	GCNGC	2 cut(s)	185, 306
Sau3AI	GATC	6 cut(s)	23, 100, 326, 463, 706, 859
Sau96I	GGNCC	2 cut(s)	218, 233
SchI	GAGTC	1 cut(s)	608
SduI	GDGCHC	2 cut(s)	403, 689
SfaNI	GCATC	2 cut(s)	386, 844
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	4 cut(s)	158, 627, 745, 782
Sse9I	AATT	7 cut(s)	140, 167, 174, 228, 503, 790, 814
SseBI	AGGCCT	2 cut(s)	313, 883
SspI	AATATT	1 cut(s)	526
StuI	AGGCCT	2 cut(s)	313, 883
TaaI	ACNGT	4 cut(s)	75, 415, 479, 727
TaiI	ACGT	1 cut(s)	339
TasI	AATT	7 cut(s)	140, 167, 174, 228, 503, 790, 814
TatI	WGTACW	2 cut(s)	61, 727
TfiI	GAWTC	2 cut(s)	50, 639
Tru1I	TTAA	3 cut(s)	147, 528, 929
Tru9I	TTAA	3 cut(s)	147, 528, 929
TscAI	CASTG	2 cut(s)	717, 784
TseFI	GTSAC	3 cut(s)	91, 346, 798
TseI	GCWGC	2 cut(s)	184, 305
Tsp45I	GTSAC	3 cut(s)	91, 346, 798
TspDTI	ATGAA	4 cut(s)	51, 329, 355, 516
TspRI	CASTG	2 cut(s)	717, 784
Van91I	CCANNNNNTGG	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	3 cut(s)	167, 503, 790
XceI	RCATGY	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.