Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005544

Physical Location & Seq

Genomic Coordinates Reverse (-)

23172307 .. 23173950

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG233000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTGCTGGTTGAAACAAAAGGATCCTATACTAATGAAATCAACTTGGATTCTCTTGATGTACATGTTGGACAGTCCTACTCTGTGCTTGTCACAGCTGATCAAGCCACTTCAGACTATTACATGGTAGCAACTCCTAAATTGCTTAAAATCACAGATATGACCAAATTTGGAATTGGTGTGCTGCACTATGATAACTCCACCACAGATGTTAGTGGACCACTACTAATTGGCCCTGACCCTTTTGATATAGAACTATCCACCAGTCAAGCCAACTCCATCAGGTGGAACCTGACTACAAGGGCAGCAAGGCCTAATCCACAAGGATCCTTCAACGTTCATAATGTGACACTATCACAGACATTCATACTAAGTGCATCAACAGCAGAGATTGATGGTGCACCCAAGTTTACTGTCAACAATGTGTCTTACTTGACCCCAGATACACCATTGAAGTTGGCTGATCACTTGGTCAACGGTTCTGGAGTTTACGAGCTTGATGAATTCTCTACTAACTCTACAAATATTAAATCTGAGAGTGGAGTTTTTGTTGCAAGTGGGATACACAAAGGGTGGATAGAACTTGTTTTGCACAATGATTTGGAGGTCATGGACTCTTGGCATTTAGATGGCTTCGGATTCTTTGTTGTTGGCTACGGCCGTGGAAAGTGGAGTGCTAAGTCGTGCTCAACCTACAACCTTTATGATCCAGTGGAAAATTTGCCCGGCCCACTTCTCCTTCTGGATCGTCTGCGCCTCCTCCAAAGCCATCTAGTCTCATATTGCCATTATGCTGTCAATTGTTGTGAATCTCCATTTTTCTTTCAATTTCCTCAGAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

281

Amino Acids

31.02

Weight (kDa)

4.94

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	1 - 66	3.8e-14	Multicopper oxidase
Cu-oxidase_2	PF07731	149 - 239	3.4e-11	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18341 FvH4_7g18350
malus_domestica	MD01G1098800.v1.1 MD01G1099000.v1.1 MD07G1165500.v1.1 MD07G1165800.v1.1
prunus_persica	Prupe.2G205500_v2.0.a1 Prupe.2G205600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362061 RchiOBHm_Chr1g0362091 RchiOBHm_Chr7g0206161
rosa_laevigata	RLG00000027672 RLG00000027676
rosa_multiflora	Rmu_co8403161.1_g000001 Rmu_sc0010614.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294510 Rroxscaffold_4G00294540
rosa_rugosa	Rorug01G0293200 Rorug01G0293600
rosa_samantha	Rh1BG266700 Rh1BG267000 Rh1CG284800 Rh1CG285100 Rh1DG296700 Rh1DG297100 Rh7DG233000
rosa_wichuraiana	Rw1G027020 Rw1G027050 Rw7G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	285
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	6 cut(s)	18, 31, 321, 334, 701, 753
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	3 cut(s)	167, 503, 718
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	14, 334, 454, 827
AluBI	AGCT	2 cut(s)	98, 496
AluI	AGCT	2 cut(s)	98, 496
Alw21I	GWGCWC	2 cut(s)	403, 689
Alw26I	GTCTC	1 cut(s)	781
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	6 cut(s)	18, 31, 321, 334, 701, 753
AoxI	GGCC	4 cut(s)	232, 311, 658, 727
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	184, 305
ApoI	RAATTY	3 cut(s)	167, 503, 718
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	3 cut(s)	218, 233, 728
AsuC2I	CCSGG	1 cut(s)	726
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	403
BamHI	GGATCC	2 cut(s)	23, 326
Bbv12I	GWGCWC	2 cut(s)	403, 689
BbvI	GCAGC	2 cut(s)	171, 317
BccI	CCATC	4 cut(s)	287, 389, 623, 777
BceAI	ACGGC	2 cut(s)	645, 673
BciVI	GTATCC	1 cut(s)	555
BclI	TGATCA	2 cut(s)	100, 463
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	781
BfaI	CTAG	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	185, 306
BlsI	GCNGC	2 cut(s)	186, 307
Bme1390I	CCNGG	1 cut(s)	726
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	3 cut(s)	218, 233, 728
BmiI	GGNNCC	3 cut(s)	25, 290, 328
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	264, 710
BseDI	CCNNGG	1 cut(s)	661
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	264, 710
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	1 cut(s)	403
BseX3I	CGGCCG	1 cut(s)	658
BseXI	GCAGC	2 cut(s)	171, 317
BsgI	GTGCAG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	4 cut(s)	234, 313, 660, 729
BsiEI	CGRYCG	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	403, 689
BsiSI	CCGG	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	781
BsnI	GGCC	4 cut(s)	234, 313, 660, 729
Bsp1286I	GDGCHC	2 cut(s)	403, 689
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
BspANI	GGCC	4 cut(s)	234, 313, 660, 729
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	25, 290, 328
BspPI	GGATC	6 cut(s)	18, 31, 321, 334, 701, 753
BsrGI	TGTACA	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	264, 710
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
Bst4CI	ACNGT	3 cut(s)	75, 415, 479
BstAUI	TGTACA	1 cut(s)	61
BstDEI	CTNAG	4 cut(s)	371, 534, 678, 834
BstDSI	CCRYGG	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	6 cut(s)	26, 103, 329, 466, 709, 748
BstMAI	GTCTC	1 cut(s)	781
BstMBI	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 383
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	171, 317
BstX2I	RGATCY	2 cut(s)	23, 326
BstYI	RGATCY	2 cut(s)	23, 326
BstZI	CGGCCG	1 cut(s)	658
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	234, 313, 660, 729
BtgI	CCRYGG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	717
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	218, 233, 728
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	3 cut(s)	65, 124, 610
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	4 cut(s)	371, 534, 678, 834
DpnI	GATC	6 cut(s)	25, 102, 328, 465, 708, 747
DpnII	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
EaeI	YGGCCR	1 cut(s)	658
EagI	CGGCCG	1 cut(s)	658
EclXI	CGGCCG	1 cut(s)	658
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	218
Eco52I	CGGCCG	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	503
FaeI	CATG	3 cut(s)	68, 127, 613
FatI	CATG	3 cut(s)	64, 123, 609
FbaI	TGATCA	2 cut(s)	100, 463
Fnu4HI	GCNGC	2 cut(s)	185, 306
Fsp4HI	GCNGC	2 cut(s)	185, 306
FspBI	CTAG	1 cut(s)	773
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	2 cut(s)	185, 306
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	4 cut(s)	234, 313, 660, 729
HapII	CCGG	1 cut(s)	726
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	3 cut(s)	68, 127, 613
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HincII	GTYRAC	2 cut(s)	418, 475
HindII	GTYRAC	2 cut(s)	418, 475
HinfI	GANTC	4 cut(s)	50, 614, 639, 809
HpaII	CCGG	1 cut(s)	726
Hpy166II	GTNNAC	6 cut(s)	218, 401, 411, 418, 475, 490
Hpy188I	TCNGA	4 cut(s)	115, 535, 638, 837
Hpy188III	TCNNGA	3 cut(s)	56, 483, 743
Hpy8I	GTNNAC	6 cut(s)	218, 401, 411, 418, 475, 490
HpyAV	CCTTC	2 cut(s)	340, 749
HpyCH4III	ACNGT	3 cut(s)	75, 415, 479
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	5 cut(s)	187, 377, 401, 554, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 383
HpyF3I	CTNAG	4 cut(s)	371, 534, 678, 834
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	68, 127, 613
HspAI	GCGC	1 cut(s)	754
Ksp22I	TGATCA	2 cut(s)	100, 463
Kzo9I	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
LpnPI	CCDG	9 cut(s)	249, 268, 277, 305, 453, 468, 723, 728, 739
Lsp1109I	GCAGC	2 cut(s)	171, 317
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	91, 346
MalI	GATC	6 cut(s)	25, 102, 328, 465, 708, 747
MboI	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
MfeI	CAATTG	1 cut(s)	799
MflI	RGATCY	2 cut(s)	23, 326
MhlI	GDGCHC	2 cut(s)	403, 689
MluCI	AATT	8 cut(s)	140, 167, 174, 228, 503, 718, 799, 827
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	598, 767, 770, 843
MseI	TTAA	3 cut(s)	147, 528, 844
MslI	CAYNNNNRTG	2 cut(s)	158, 627
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	1 cut(s)	726
MunI	CAATTG	1 cut(s)	799
MwoI	GCNNNNNNNGC	2 cut(s)	104, 383
NciI	CCSGG	1 cut(s)	726
NdeII	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
NlaIII	CATG	3 cut(s)	68, 127, 613
NlaIV	GGNNCC	3 cut(s)	25, 290, 328
NmuCI	GTSAC	2 cut(s)	91, 346
NspI	RCATGY	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	313
PciI	ACATGT	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	50, 639, 809
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	186, 307
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PscI	ACATGT	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	25, 290, 328
PspPI	GGNCC	3 cut(s)	218, 233, 728
PsuI	RGATCY	2 cut(s)	23, 326
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	2 cut(s)	158, 627
SaqAI	TTAA	3 cut(s)	147, 528, 844
SatI	GCNGC	2 cut(s)	185, 306
Sau3AI	GATC	6 cut(s)	23, 100, 326, 463, 706, 745
Sau96I	GGNCC	3 cut(s)	218, 233, 728
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	2 cut(s)	403, 689
SetI	ASST	8 cut(s)	100, 287, 294, 339, 498, 609, 695, 702
SfaNI	GCATC	1 cut(s)	386
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	158, 627
Sse9I	AATT	8 cut(s)	140, 167, 174, 228, 503, 718, 799, 827
SseBI	AGGCCT	1 cut(s)	313
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	773
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	75, 415, 479
TaiI	ACGT	1 cut(s)	339
TasI	AATT	8 cut(s)	140, 167, 174, 228, 503, 718, 799, 827
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	50, 639, 809
Tru1I	TTAA	3 cut(s)	147, 528, 844
Tru9I	TTAA	3 cut(s)	147, 528, 844
TscAI	CASTG	1 cut(s)	717
TseFI	GTSAC	2 cut(s)	91, 346
TseI	GCWGC	2 cut(s)	184, 305
Tsp45I	GTSAC	2 cut(s)	91, 346
TspDTI	ATGAA	4 cut(s)	51, 329, 355, 516
TspRI	CASTG	1 cut(s)	717
Van91I	CCANNNNNTGG	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	3 cut(s)	167, 503, 718
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.