Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005544

Physical Location & Seq

Genomic Coordinates Reverse (-)

40912370 .. 40913602

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0293200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGACATGAATATTAGGGAAATGTCATCAAGAGTTCTTTTTGAAGCCTACAGTGAGGCTGTTTCTCAAAACAATGAACCTTGGTCTCTTATCGGAGATTTCAGTAATATTTGCGAACTGAGGAGAAAATTGGGGGTAGATTCTTTTCTCTGGATTAACAGAGTCTATGAGTTGTCTTTCTTTAATAAGGTTAGAGTATCTGGTATCCCTGAGTATCTCCTATTTTTTGGCTGTGATTGTAGACATCTTGGAGATGACTTAGTTCTGCAGTGGGAATTAAATGTCGTTGAGAAGGATAAGGATGCATTAGTTGAGGACTTTTCTAAGGACGACTACAATGACATGGTGGATGGAAGGCAAAGCTGGTTAGGACCAACTCTGGAGAGCATAAGTGGGGGGCCCTCTTCACTGCCAAGAATAAATGGTTGTGATACCTCAAGTTTTGCATATGCTGCAATATTGTACTCGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

157

Amino Acids

17.89

Weight (kDa)

4.42

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18341 FvH4_7g18350
malus_domestica	MD01G1098800.v1.1 MD01G1099000.v1.1 MD07G1165500.v1.1 MD07G1165800.v1.1
prunus_persica	Prupe.2G205500_v2.0.a1 Prupe.2G205600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362061 RchiOBHm_Chr1g0362091 RchiOBHm_Chr7g0206161
rosa_laevigata	RLG00000027672 RLG00000027676
rosa_multiflora	Rmu_co8403161.1_g000001 Rmu_sc0010614.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294510 Rroxscaffold_4G00294540
rosa_rugosa	Rorug01G0293200 Rorug01G0293600
rosa_samantha	Rh1BG266700 Rh1BG267000 Rh1CG284800 Rh1CG285100 Rh1DG296700 Rh1DG297100 Rh7DG233000
rosa_wichuraiana	Rw1G027020 Rw1G027050 Rw7G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	1 cut(s)	398
ApaI	GGGCCC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	452
AspS9I	GGNCC	3 cut(s)	371, 398, 399
AvaI	CYCGRG	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	49, 266
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	3 cut(s)	371, 398, 399
BmiI	GGNNCC	2 cut(s)	399, 400
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	307, 355
BseMII	CTCAG	2 cut(s)	110, 201
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	439
BshFI	GGCC	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	466
Bsp120I	GGGCCC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	402
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	111, 202
BspLI	GGNNCC	2 cut(s)	399, 400
BspMAI	CTGCAG	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	409
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstDEI	CTNAG	4 cut(s)	119, 210, 259, 324
BstF5I	GGATG	2 cut(s)	307, 355
BstMAI	GTCTC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstSFI	CTRYAG	2 cut(s)	49, 266
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	307, 355
BtsI	GCAGTG	2 cut(s)	275, 407
BtsIMutI	CAGTG	3 cut(s)	58, 275, 407
Cfr13I	GGNCC	3 cut(s)	371, 398, 399
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	2 cut(s)	7, 343
CviJI	RGCY	5 cut(s)	47, 59, 231, 363, 400
CviKI_1	RGCY	5 cut(s)	47, 59, 231, 363, 400
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	4 cut(s)	119, 210, 259, 324
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	466
EcoO109I	RGGNCCY	2 cut(s)	398, 399
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	10, 346
FaiI	YATR	6 cut(s)	8, 168, 344, 389, 448, 450
FatI	CATG	2 cut(s)	6, 342
FauNDI	CATATG	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	314, 362
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	453
GluI	GCNGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	10, 346
HinfI	GANTC	2 cut(s)	140, 162
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	3 cut(s)	30, 151, 380
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	286, 348
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	268, 305, 446, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	4 cut(s)	119, 210, 259, 324
Hsp92II	CATG	2 cut(s)	10, 346
LpnPI	CCDG	5 cut(s)	136, 186, 222, 349, 365
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	2 cut(s)	128, 275
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	5 cut(s)	49, 114, 307, 412, 445
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	3 cut(s)	156, 183, 278
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeI	CATATG	1 cut(s)	448
NlaIII	CATG	2 cut(s)	10, 346
NlaIV	GGNNCC	2 cut(s)	399, 400
NsiI	ATGCAT	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	399, 400
PspOMI	GGGCCC	1 cut(s)	398
PspPI	GGNCC	3 cut(s)	371, 398, 399
PspXI	VCTCGAGB	1 cut(s)	466
PstI	CTGCAG	1 cut(s)	270
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SaqAI	TTAA	3 cut(s)	156, 183, 278
SatI	GCNGC	1 cut(s)	453
Sau96I	GGNCC	3 cut(s)	371, 398, 399
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	4 cut(s)	82, 192, 365, 437
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	2 cut(s)	49, 266
Sfr274I	CTCGAG	1 cut(s)	466
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	436, 466
SmoI	CTYRAG	2 cut(s)	436, 466
Sse9I	AATT	2 cut(s)	128, 275
SspI	AATATT	3 cut(s)	13, 109, 459
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	467
TasI	AATT	2 cut(s)	128, 275
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	156, 183, 278
Tru9I	TTAA	3 cut(s)	156, 183, 278
TscAI	CASTG	3 cut(s)	58, 275, 414
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	23, 90
TspRI	CASTG	3 cut(s)	58, 275, 414
VpaK11BI	GGWCC	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.