Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010614.1

Orthogroup ID

OG0005544

Physical Location & Seq

Genomic Coordinates Reverse (-)

21444 .. 22735

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010614.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgaccaggtggaacttaactgctggagctgcaaggcctaatccacaaggtagcttcaacgtctcaaatgtgaccctatcccaaaccttcgtcctagaaagtacagtggctcaaattcataatctaccacgttatgttgtcaacaatgtgtcatatgacactgtaacgaccccgctgaaactcgctgattactttgtcaatggttccggtgtgtatcaacttgattcttttccagtgaaatcagtcaaccccgatgctggttatggagtatttgtagtgactggaatccacaaagggtggatagaaatagtgtttaaaaacaacctggctgccatggattcttggcatttggatggttacggattttttgttgttgggttcggcattggagattggactacagaatcacggagcacgtacaacctctacgatcctgttgtaagatcaaccgtgcaagtgtacccgggagcatggactgcagtgtatgcattcctagacaaccctggaatgtggaacttgaggtcacaactactgaagcactggtacttgggacaagaactctacgtacgagtttttgatgctgatcctgaccctgctaaggagcgcccgccacctgataacctccttctatgtgggattttttctgattctcctccagccccagctccaggtccatggacaggagagtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

230

Amino Acids

25.6

Weight (kDa)

5.06

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18341 FvH4_7g18350
malus_domestica	MD01G1098800.v1.1 MD01G1099000.v1.1 MD07G1165500.v1.1 MD07G1165800.v1.1
prunus_persica	Prupe.2G205500_v2.0.a1 Prupe.2G205600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362061 RchiOBHm_Chr1g0362091 RchiOBHm_Chr7g0206161
rosa_laevigata	RLG00000027672 RLG00000027676
rosa_multiflora	Rmu_co8403161.1_g000001 Rmu_sc0010614.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294510 Rroxscaffold_4G00294540
rosa_rugosa	Rorug01G0293200 Rorug01G0293600
rosa_samantha	Rh1BG266700 Rh1BG267000 Rh1CG284800 Rh1CG285100 Rh1DG296700 Rh1DG297100 Rh7DG233000
rosa_wichuraiana	Rw1G027020 Rw1G027050 Rw7G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	173, 608
AclWI	GGATC	2 cut(s)	425, 578
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	5 cut(s)	103, 419, 461, 545, 567
AfiI	CCNNNNNNNGG	4 cut(s)	257, 598, 668, 680
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	4 cut(s)	5, 324, 502, 667
AluBI	AGCT	3 cut(s)	29, 54, 665
AluI	AGCT	3 cut(s)	29, 54, 665
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	425, 578
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	29, 329
ApoI	RAATTY	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	671
AsuC2I	CCSGG	2 cut(s)	464, 465
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	671
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	16, 316
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	4 cut(s)	7, 326, 504, 669
BcnI	CCSGG	2 cut(s)	464, 465
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	95, 494
BfmI	CTRYAG	2 cut(s)	399, 477
BfoI	RGCGCY	1 cut(s)	607
BisI	GCNGC	2 cut(s)	30, 330
BlsI	GCNGC	2 cut(s)	31, 331
Bme1390I	CCNGG	6 cut(s)	7, 326, 464, 465, 504, 669
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	6 cut(s)	7, 326, 464, 465, 504, 669
BmsI	GCATC	2 cut(s)	244, 568
BpmI	CTGGAG	3 cut(s)	45, 639, 651
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	2 cut(s)	464, 465
BsaAI	YACGTR	2 cut(s)	417, 565
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	4 cut(s)	333, 463, 502, 674
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	4 cut(s)	257, 598, 668, 680
Bse1I	ACTGG	3 cut(s)	233, 286, 545
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	4 cut(s)	7, 326, 504, 669
BseDI	CCNNGG	4 cut(s)	333, 463, 502, 674
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	4 cut(s)	257, 598, 668, 680
BseNI	ACTGG	3 cut(s)	233, 286, 545
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	2 cut(s)	16, 316
BseYI	CCCAGC	1 cut(s)	661
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	207, 464
BsiWI	CGTACG	1 cut(s)	565
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	4 cut(s)	257, 598, 668, 680
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	430, 443, 583
Bsp19I	CCATGG	2 cut(s)	333, 674
BspACI	CCGC	2 cut(s)	173, 608
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	2 cut(s)	425, 578
BsrI	ACTGG	3 cut(s)	233, 286, 545
BssECI	CCNNGG	4 cut(s)	333, 463, 502, 674
BssMI	GATC	3 cut(s)	430, 443, 583
BssT1I	CCWWGG	2 cut(s)	333, 674
Bst2UI	CCWGG	4 cut(s)	7, 326, 504, 669
Bst4CI	ACNGT	3 cut(s)	106, 163, 451
BstAPI	GCANNNNNTGC	2 cut(s)	476, 485
BstBAI	YACGTR	2 cut(s)	417, 565
BstC8I	GCNNGC	1 cut(s)	608
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	2 cut(s)	333, 674
BstF5I	GGATG	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	3 cut(s)	433, 446, 586
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	430, 443, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 476, 485
BstNI	CCWGG	4 cut(s)	7, 326, 504, 669
BstSCI	CCNGG	6 cut(s)	5, 324, 462, 463, 502, 667
BstSFI	CTRYAG	2 cut(s)	399, 477
BstSNI	TACGTA	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	16, 316
BstXI	CCANNNNNNTGG	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	2 cut(s)	333, 674
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	5 cut(s)	111, 159, 240, 486, 538
Cac8I	GCNNGC	1 cut(s)	608
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	671
Cfr9I	CCCGGG	1 cut(s)	463
CsiI	ACCWGGT	1 cut(s)	5
Csp6I	GTAC	5 cut(s)	102, 418, 460, 544, 566
CviAII	CATG	3 cut(s)	334, 471, 675
CviJI	RGCY	7 cut(s)	29, 37, 54, 110, 329, 659, 665
CviKI_1	RGCY	7 cut(s)	29, 37, 54, 110, 329, 659, 665
CviQI	GTAC	5 cut(s)	102, 418, 460, 544, 566
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	3 cut(s)	432, 445, 585
DpnII	GATC	3 cut(s)	430, 443, 583
DraI	TTTAAA	1 cut(s)	316
Eco105I	TACGTA	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	333, 674
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	463
EcoRII	CCWGG	4 cut(s)	5, 324, 502, 667
EcoT14I	CCWWGG	2 cut(s)	333, 674
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	333, 674
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	3 cut(s)	337, 474, 678
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	3 cut(s)	333, 470, 674
FauI	CCCGC	2 cut(s)	180, 615
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	30, 330
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	30, 330
FspBI	CTAG	2 cut(s)	95, 494
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	2 cut(s)	30, 330
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	3 cut(s)	45, 639, 651
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	207, 464
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	3 cut(s)	337, 474, 678
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	2 cut(s)	142, 247
HindII	GTYRAC	2 cut(s)	142, 247
HinfI	GANTC	5 cut(s)	224, 285, 338, 404, 647
HpaII	CCGG	2 cut(s)	207, 464
Hpy166II	GTNNAC	3 cut(s)	142, 247, 460
Hpy188I	TCNGA	1 cut(s)	646
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	3 cut(s)	142, 247, 460
HpyAV	CCTTC	2 cut(s)	97, 635
HpyCH4III	ACNGT	3 cut(s)	106, 163, 451
HpyCH4IV	ACGT	4 cut(s)	60, 130, 416, 564
HpyCH4V	TGCA	4 cut(s)	32, 454, 479, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 476, 485
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	4 cut(s)	60, 130, 416, 564
Hsp92II	CATG	3 cut(s)	337, 474, 678
HspAI	GCGC	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	430, 443, 583
LmnI	GCTCC	5 cut(s)	26, 411, 467, 601, 670
Lsp1109I	GCAGC	2 cut(s)	16, 316
LweI	GCATC	2 cut(s)	244, 568
MabI	ACCWGGT	1 cut(s)	5
MaeI	CTAG	2 cut(s)	95, 494
MaeII	ACGT	4 cut(s)	60, 130, 416, 564
MaeIII	GTNAC	5 cut(s)	70, 163, 277, 356, 522
MalI	GATC	3 cut(s)	432, 445, 585
MboI	GATC	3 cut(s)	430, 443, 583
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	4 cut(s)	434, 513, 632, 663
Mph1103I	ATGCAT	1 cut(s)	490
MseI	TTAA	2 cut(s)	17, 315
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	2 cut(s)	207, 464
MspR9I	CCNGG	6 cut(s)	7, 326, 464, 465, 504, 669
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	4 cut(s)	7, 326, 504, 669
MwoI	GCNNNNNNNGC	3 cut(s)	29, 476, 485
NciI	CCSGG	2 cut(s)	464, 465
NcoI	CCATGG	2 cut(s)	333, 674
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	3 cut(s)	430, 443, 583
NlaIII	CATG	3 cut(s)	337, 474, 678
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	3 cut(s)	70, 277, 522
NsiI	ATGCAT	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	5 cut(s)	224, 285, 338, 404, 647
Pfl23II	CGTACG	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	31, 331
Ppu21I	YACGTR	2 cut(s)	417, 565
Psp6I	CCWGG	4 cut(s)	5, 324, 502, 667
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	4 cut(s)	5, 324, 502, 667
PspLI	CGTACG	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	671
PsrI	GAACNNNNNNTAC	2 cut(s)	549, 581
PstI	CTGCAG	1 cut(s)	481
RsaI	GTAC	5 cut(s)	103, 419, 461, 545, 567
RsaNI	GTAC	5 cut(s)	102, 418, 460, 544, 566
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	17, 315
SatI	GCNGC	2 cut(s)	30, 330
Sau3AI	GATC	3 cut(s)	430, 443, 583
Sau96I	GGNCC	1 cut(s)	671
ScrFI	CCNGG	6 cut(s)	7, 326, 464, 465, 504, 669
SduI	GDGCHC	1 cut(s)	416
SexAI	ACCWGGT	1 cut(s)	5
SfaNI	GCATC	2 cut(s)	244, 568
SfcI	CTRYAG	2 cut(s)	399, 477
SinI	GGWCC	1 cut(s)	671
SmaI	CCCGGG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SnaBI	TACGTA	1 cut(s)	565
Sse9I	AATT	1 cut(s)	114
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	173, 608
SspMI	CTAG	2 cut(s)	95, 494
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	6 cut(s)	5, 324, 462, 463, 502, 667
StyI	CCWWGG	2 cut(s)	333, 674
TaaI	ACNGT	3 cut(s)	106, 163, 451
TaiI	ACGT	4 cut(s)	63, 133, 419, 567
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	5 cut(s)	224, 285, 338, 404, 647
Tru1I	TTAA	2 cut(s)	17, 315
Tru9I	TTAA	2 cut(s)	17, 315
TscAI	CASTG	5 cut(s)	111, 166, 240, 486, 545
TseFI	GTSAC	3 cut(s)	70, 277, 522
TseI	GCWGC	2 cut(s)	29, 329
Tsp45I	GTSAC	3 cut(s)	70, 277, 522
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	2 cut(s)	375, 424
TspMI	CCCGGG	1 cut(s)	463
TspRI	CASTG	5 cut(s)	111, 166, 240, 486, 545
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	1 cut(s)	114
XmaI	CCCGGG	1 cut(s)	463
XspI	CTAG	2 cut(s)	95, 494
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.