Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8403161.1

Orthogroup ID

OG0005544

Physical Location & Seq

Genomic Coordinates Forward (+)

93 .. 1234

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8403161.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaccaggtggaacttaactgctggagctgcaaggcctaatccacaaggtagcttcaacgtctcaaatgtgaccctatcccaaaccttcgtcctagaaagtacagtggctcaaattcataatctaccacgttatgttgtcaacaatgtgtcatatgacactgtaacgaccccgctgaaactcgctgattactttgtcaatggttccggtgtgtatcaacttgattcttttccagtgaaatcagtcaaccccgatgctggttatggagtatttgtagtgactggaatccacaaagggtggatagaaatagtgtttaaaaacaacctggctgccatggattcttggcatttggatggttacggattttttgttgttgggttcggcattggagattggactacagaatcacggagcacgtacaacctctacgatcctgttgtaagatcaaccgtgcaagtgtacccgggagcatggactgcagtgtatgcattcctagacaaccctggaatgtggaacttgaggtcacaactactgaagcactggtacttgggacaagaactctacgtacgagtttttgatgctgatcctgaccctgctaaggagcgcccgccacctgataacctccttctatgtggtaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

213

Amino Acids

23.82

Weight (kDa)

5.46

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18341 FvH4_7g18350
malus_domestica	MD01G1098800.v1.1 MD01G1099000.v1.1 MD07G1165500.v1.1 MD07G1165800.v1.1
prunus_persica	Prupe.2G205500_v2.0.a1 Prupe.2G205600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362061 RchiOBHm_Chr1g0362091 RchiOBHm_Chr7g0206161
rosa_laevigata	RLG00000027672 RLG00000027676
rosa_multiflora	Rmu_co8403161.1_g000001 Rmu_sc0010614.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294510 Rroxscaffold_4G00294540
rosa_rugosa	Rorug01G0293200 Rorug01G0293600
rosa_samantha	Rh1BG266700 Rh1BG267000 Rh1CG284800 Rh1CG285100 Rh1DG296700 Rh1DG297100 Rh7DG233000
rosa_wichuraiana	Rw1G027020 Rw1G027050 Rw7G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	173, 608
AclWI	GGATC	2 cut(s)	425, 578
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	5 cut(s)	103, 419, 461, 545, 567
AfiI	CCNNNNNNNGG	2 cut(s)	257, 598
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	3 cut(s)	5, 324, 502
AluBI	AGCT	2 cut(s)	29, 54
AluI	AGCT	2 cut(s)	29, 54
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	425, 578
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	29, 329
ApoI	RAATTY	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	606
AsuC2I	CCSGG	2 cut(s)	464, 465
AvaI	CYCGRG	1 cut(s)	463
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	16, 316
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	3 cut(s)	7, 326, 504
BcnI	CCSGG	2 cut(s)	464, 465
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	3 cut(s)	95, 494, 640
BfmI	CTRYAG	2 cut(s)	399, 477
BfoI	RGCGCY	1 cut(s)	607
BisI	GCNGC	2 cut(s)	30, 330
BlsI	GCNGC	2 cut(s)	31, 331
Bme1390I	CCNGG	5 cut(s)	7, 326, 464, 465, 504
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	5 cut(s)	7, 326, 464, 465, 504
BmsI	GCATC	2 cut(s)	244, 568
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	2 cut(s)	464, 465
BsaAI	YACGTR	2 cut(s)	417, 565
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	3 cut(s)	333, 463, 502
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 598
Bse1I	ACTGG	3 cut(s)	233, 286, 545
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	7, 326, 504
BseDI	CCNNGG	3 cut(s)	333, 463, 502
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	257, 598
BseNI	ACTGG	3 cut(s)	233, 286, 545
BseXI	GCAGC	2 cut(s)	16, 316
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	207, 464
BsiWI	CGTACG	1 cut(s)	565
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	257, 598
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	430, 443, 583
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	2 cut(s)	173, 608
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	2 cut(s)	425, 578
BsrI	ACTGG	3 cut(s)	233, 286, 545
BssECI	CCNNGG	3 cut(s)	333, 463, 502
BssMI	GATC	3 cut(s)	430, 443, 583
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	3 cut(s)	7, 326, 504
Bst4CI	ACNGT	3 cut(s)	106, 163, 451
BstAPI	GCANNNNNTGC	2 cut(s)	476, 485
BstBAI	YACGTR	2 cut(s)	417, 565
BstC8I	GCNNGC	1 cut(s)	608
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	3 cut(s)	433, 446, 586
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	430, 443, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 476, 485
BstNI	CCWGG	3 cut(s)	7, 326, 504
BstSCI	CCNGG	5 cut(s)	5, 324, 462, 463, 502
BstSFI	CTRYAG	2 cut(s)	399, 477
BstSNI	TACGTA	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	16, 316
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	5 cut(s)	111, 159, 240, 486, 538
Cac8I	GCNNGC	1 cut(s)	608
CfoI	GCGC	1 cut(s)	606
Cfr9I	CCCGGG	1 cut(s)	463
CsiI	ACCWGGT	1 cut(s)	5
Csp6I	GTAC	5 cut(s)	102, 418, 460, 544, 566
CviAII	CATG	2 cut(s)	334, 471
CviJI	RGCY	5 cut(s)	29, 37, 54, 110, 329
CviKI_1	RGCY	5 cut(s)	29, 37, 54, 110, 329
CviQI	GTAC	5 cut(s)	102, 418, 460, 544, 566
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	3 cut(s)	432, 445, 585
DpnII	GATC	3 cut(s)	430, 443, 583
DraI	TTTAAA	1 cut(s)	316
Eco105I	TACGTA	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	5, 324, 502
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	2 cut(s)	337, 474
FaiI	YATR	9 cut(s)	120, 135, 154, 156, 264, 335, 472, 486, 631
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	2 cut(s)	333, 470
FauI	CCCGC	2 cut(s)	180, 615
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	30, 330
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	30, 330
FspBI	CTAG	3 cut(s)	95, 494, 640
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	2 cut(s)	30, 330
GsuI	CTGGAG	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	207, 464
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	337, 474
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	2 cut(s)	142, 247
HindII	GTYRAC	2 cut(s)	142, 247
HinfI	GANTC	4 cut(s)	224, 285, 338, 404
HpaII	CCGG	2 cut(s)	207, 464
Hpy166II	GTNNAC	3 cut(s)	142, 247, 460
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	3 cut(s)	142, 247, 460
HpyAV	CCTTC	2 cut(s)	97, 635
HpyCH4III	ACNGT	3 cut(s)	106, 163, 451
HpyCH4IV	ACGT	4 cut(s)	60, 130, 416, 564
HpyCH4V	TGCA	4 cut(s)	32, 454, 479, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 476, 485
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	4 cut(s)	60, 130, 416, 564
Hsp92II	CATG	2 cut(s)	337, 474
HspAI	GCGC	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	430, 443, 583
LmnI	GCTCC	4 cut(s)	26, 411, 467, 601
Lsp1109I	GCAGC	2 cut(s)	16, 316
LweI	GCATC	2 cut(s)	244, 568
MabI	ACCWGGT	1 cut(s)	5
MaeI	CTAG	3 cut(s)	95, 494, 640
MaeII	ACGT	4 cut(s)	60, 130, 416, 564
MaeIII	GTNAC	6 cut(s)	70, 163, 277, 356, 522, 635
MalI	GATC	3 cut(s)	432, 445, 585
MboI	GATC	3 cut(s)	430, 443, 583
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	3 cut(s)	434, 513, 632
Mph1103I	ATGCAT	1 cut(s)	490
MseI	TTAA	2 cut(s)	17, 315
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	2 cut(s)	207, 464
MspR9I	CCNGG	5 cut(s)	7, 326, 464, 465, 504
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	3 cut(s)	7, 326, 504
MwoI	GCNNNNNNNGC	3 cut(s)	29, 476, 485
NciI	CCSGG	2 cut(s)	464, 465
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	3 cut(s)	430, 443, 583
NlaIII	CATG	2 cut(s)	337, 474
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	3 cut(s)	70, 277, 522
NsiI	ATGCAT	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	224, 285, 338, 404
Pfl23II	CGTACG	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	31, 331
Ppu21I	YACGTR	2 cut(s)	417, 565
Psp6I	CCWGG	3 cut(s)	5, 324, 502
PspGI	CCWGG	3 cut(s)	5, 324, 502
PspLI	CGTACG	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	205
PsrI	GAACNNNNNNTAC	2 cut(s)	549, 581
PstI	CTGCAG	1 cut(s)	481
RsaI	GTAC	5 cut(s)	103, 419, 461, 545, 567
RsaNI	GTAC	5 cut(s)	102, 418, 460, 544, 566
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	17, 315
SatI	GCNGC	2 cut(s)	30, 330
Sau3AI	GATC	3 cut(s)	430, 443, 583
ScrFI	CCNGG	5 cut(s)	7, 326, 464, 465, 504
SduI	GDGCHC	1 cut(s)	416
SexAI	ACCWGGT	1 cut(s)	5
SfaNI	GCATC	2 cut(s)	244, 568
SfcI	CTRYAG	2 cut(s)	399, 477
SmaI	CCCGGG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SnaBI	TACGTA	1 cut(s)	565
Sse9I	AATT	1 cut(s)	114
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	173, 608
SspMI	CTAG	3 cut(s)	95, 494, 640
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	5 cut(s)	5, 324, 462, 463, 502
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	106, 163, 451
TaiI	ACGT	4 cut(s)	63, 133, 419, 567
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	4 cut(s)	224, 285, 338, 404
Tru1I	TTAA	2 cut(s)	17, 315
Tru9I	TTAA	2 cut(s)	17, 315
TscAI	CASTG	5 cut(s)	111, 166, 240, 486, 545
TseFI	GTSAC	3 cut(s)	70, 277, 522
TseI	GCWGC	2 cut(s)	29, 329
Tsp45I	GTSAC	3 cut(s)	70, 277, 522
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	2 cut(s)	375, 424
TspMI	CCCGGG	1 cut(s)	463
TspRI	CASTG	5 cut(s)	111, 166, 240, 486, 545
XapI	RAATTY	1 cut(s)	114
XmaI	CCCGGG	1 cut(s)	463
XspI	CTAG	3 cut(s)	95, 494, 640
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.