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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12590 AT3G12590 |
| fragaria_vesca | FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g22001 FvH4_7g22001 |
| malus_domestica | MD01G1124000.v1.1 MD07G1194200.v1.1 |
| prunus_persica | Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 |
| pyrus_communis | pycom01g15050 pycom07g18300 |
| rosa_chinensis | RchiOBHm_Chr1g0366301 |
| rosa_laevigata | RLG00000027354 |
| rosa_multiflora | Rmu_co8229963.1_g000001 Rmu_co8389475.1_g000001 Rmu_ssc0000250.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290010 Rroxscaffold_4G00290260 |
| rosa_rugosa | Rorug01G0328600 Rorug01G0328600 Rorug01G0328700.1 |
| rosa_samantha | Rh1AG336900 Rh1BG298500 Rh1CG313800 Rh1DG329900 |
| rosa_wichuraiana | Rw1G029870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2627 |
| Acc36I | ACCTGC | 3 cut(s) | 690, 2562, 2627 |
| AccII | CGCG | 1 cut(s) | 176 |
| AclWI | GGATC | 1 cut(s) | 496 |
| AcoI | YGGCCR | 2 cut(s) | 150, 3236 |
| AcsI | RAATTY | 4 cut(s) | 234, 1879, 2584, 3416 |
| AcuI | CTGAAG | 8 cut(s) | 35, 1968, 2637, 2646, 3503, 3554, 3617, 3635 |
| AdeI | CACNNNGTG | 2 cut(s) | 193, 734 |
| AfaI | GTAC | 8 cut(s) | 377, 543, 1129, 1944, 1975, 2829, 3376, 3557 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 148, 3181 |
| AflIII | ACRYGT | 2 cut(s) | 1398, 1929 |
| AgeI | ACCGGT | 1 cut(s) | 1060 |
| AjnI | CCWGG | 3 cut(s) | 95, 3319, 3396 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 429, 461 |
| AleI | CACNNNNGTG | 1 cut(s) | 1218 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2363, 2395 |
| Alw21I | GWGCWC | 4 cut(s) | 216, 1175, 2977, 3592 |
| Alw26I | GTCTC | 9 cut(s) | 97, 386, 471, 480, 597, 606, 675, 2421, 3140 |
| AlwI | GGATC | 1 cut(s) | 496 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1421, 3386 |
| Ama87I | CYCGRG | 3 cut(s) | 35, 1185, 3448 |
| AoxI | GGCC | 5 cut(s) | 150, 1138, 3115, 3183, 3236 |
| ApoI | RAATTY | 4 cut(s) | 234, 1879, 2584, 3416 |
| AseI | ATTAAT | 2 cut(s) | 2907, 2925 |
| AsiGI | ACCGGT | 1 cut(s) | 1060 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1896, 2754 |
| AspLEI | GCGC | 3 cut(s) | 141, 855, 2200 |
| AspS9I | GGNCC | 3 cut(s) | 449, 702, 1139 |
| AsuC2I | CCSGG | 2 cut(s) | 36, 37 |
| AsuHPI | GGTGA | 2 cut(s) | 1050, 1180 |
| AvaI | CYCGRG | 3 cut(s) | 35, 1185, 3448 |
| AvaII | GGWCC | 2 cut(s) | 449, 702 |
| BaeGI | GKGCMC | 1 cut(s) | 1661 |
| BalI | TGGCCA | 1 cut(s) | 3238 |
| BanII | GRGCYC | 5 cut(s) | 35, 652, 2485, 2977, 3592 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 381, 413 |
| BauI | CACGAG | 1 cut(s) | 3210 |
| BbsI | GAAGAC | 3 cut(s) | 678, 929, 1319 |
| Bbv12I | GWGCWC | 4 cut(s) | 216, 1175, 2977, 3592 |
| BbvCI | CCTCAGC | 2 cut(s) | 1251, 1666 |
| BccI | CCATC | 8 cut(s) | 262, 636, 800, 1360, 2721, 2986, 3031, 3035 |
| BceAI | ACGGC | 2 cut(s) | 528, 2318 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 243, 277, 392, 426 |
| BciT130I | CCWGG | 3 cut(s) | 97, 3321, 3398 |
| BcnI | CCSGG | 2 cut(s) | 36, 37 |
| BcoDI | GTCTC | 9 cut(s) | 97, 386, 471, 480, 597, 606, 675, 2421, 3140 |
| BfaI | CTAG | 8 cut(s) | 384, 546, 663, 941, 1326, 1862, 2283, 3137 |
| BfmI | CTRYAG | 4 cut(s) | 401, 1216, 1272, 3378 |
| BfoI | RGCGCY | 1 cut(s) | 856 |
| BfuAI | ACCTGC | 3 cut(s) | 690, 2562, 2627 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2683 |
| BglII | AGATCT | 3 cut(s) | 104, 817, 3110 |
| BlpI | GCTNAGC | 1 cut(s) | 3591 |
| Bme1390I | CCNGG | 5 cut(s) | 36, 37, 97, 3321, 3398 |
| Bme18I | GGWCC | 2 cut(s) | 449, 702 |
| BmeT110I | CYCGRG | 3 cut(s) | 35, 1185, 3448 |
| BmgT120I | GGNCC | 3 cut(s) | 449, 702, 1139 |
| BmiI | GGNNCC | 3 cut(s) | 32, 649, 3314 |
| BmrFI | CCNGG | 5 cut(s) | 36, 37, 97, 3321, 3398 |
| BmrI | ACTGGG | 1 cut(s) | 3684 |
| BmuI | ACTGGG | 1 cut(s) | 3684 |
| BoxI | GACNNNNGTC | 1 cut(s) | 447 |
| BpiI | GAAGAC | 3 cut(s) | 678, 929, 1319 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 451, 483 |
| BpmI | CTGGAG | 3 cut(s) | 79, 666, 2154 |
| Bpu10I | CCTNAGC | 3 cut(s) | 129, 1251, 1666 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3591 |
| BpuEI | CTTGAG | 6 cut(s) | 101, 1469, 1569, 1834, 2275, 2989 |
| BpuMI | CCSGG | 2 cut(s) | 36, 37 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2870 |
| BsaI | GGTCTC | 2 cut(s) | 480, 597 |
| BsaWI | WCCGGW | 4 cut(s) | 456, 1060, 1165, 1821 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 75, 105, 3156, 3186 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 148, 3181 |
| Bse118I | RCCGGY | 1 cut(s) | 1060 |
| Bse1I | ACTGG | 5 cut(s) | 840, 1204, 2137, 3102, 3679 |
| Bse3DI | GCAATG | 4 cut(s) | 303, 1900, 2830, 3273 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2870 |
| BseBI | CCWGG | 3 cut(s) | 97, 3321, 3398 |
| BseGI | GGATG | 7 cut(s) | 628, 878, 1162, 1366, 3042, 3046, 3442 |
| BseJI | GATNNNNATC | 1 cut(s) | 2870 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 148, 3181 |
| BseMI | GCAATG | 4 cut(s) | 303, 1900, 2830, 3273 |
| BseMII | CTCAG | 9 cut(s) | 120, 300, 1242, 1275, 1680, 2133, 2435, 3133, 3605 |
| BseNI | ACTGG | 5 cut(s) | 840, 1204, 2137, 3102, 3679 |
| BseSI | GKGCMC | 1 cut(s) | 1661 |
| BseYI | CCCAGC | 1 cut(s) | 325 |
| BsgI | GTGCAG | 5 cut(s) | 711, 972, 1074, 2457, 3279 |
| Bsh1236I | CGCG | 1 cut(s) | 176 |
| BshFI | GGCC | 5 cut(s) | 152, 1140, 3117, 3185, 3238 |
| BshTI | ACCGGT | 1 cut(s) | 1060 |
| BsiHKAI | GWGCWC | 4 cut(s) | 216, 1175, 2977, 3592 |
| BsiHKCI | CYCGRG | 3 cut(s) | 35, 1185, 3448 |
| BsiSI | CCGG | 7 cut(s) | 23, 36, 457, 632, 1061, 1166, 1822 |
| BslFI | GGGAC | 3 cut(s) | 257, 901, 1432 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 148, 3181 |
| BsmAI | GTCTC | 9 cut(s) | 97, 386, 471, 480, 597, 606, 675, 2421, 3140 |
| BsmFI | GGGAC | 3 cut(s) | 257, 901, 1432 |
| BsmI | GAATGC | 2 cut(s) | 1306, 2536 |
| BsnI | GGCC | 5 cut(s) | 152, 1140, 3117, 3185, 3238 |
| Bso31I | GGTCTC | 2 cut(s) | 480, 597 |
| BsoBI | CYCGRG | 3 cut(s) | 35, 1185, 3448 |
| Bsp1286I | GDGCHC | 8 cut(s) | 35, 216, 652, 1175, 1661, 2485, 2977, 3592 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3591 |
| BspANI | GGCC | 5 cut(s) | 152, 1140, 3117, 3185, 3238 |
| BspCNI | CTCAG | 9 cut(s) | 121, 301, 1243, 1276, 1679, 2134, 2436, 3132, 3604 |
| BspFNI | CGCG | 1 cut(s) | 176 |
| BspHI | TCATGA | 3 cut(s) | 2760, 2874, 3142 |
| BspLI | GGNNCC | 3 cut(s) | 32, 649, 3314 |
| BspMAI | CTGCAG | 3 cut(s) | 405, 1276, 3382 |
| BspMI | ACCTGC | 3 cut(s) | 690, 2562, 2627 |
| BspPI | GGATC | 1 cut(s) | 496 |
| BspTNI | GGTCTC | 2 cut(s) | 480, 597 |
| BsrDI | GCAATG | 4 cut(s) | 303, 1900, 2830, 3273 |
| BsrFI | RCCGGY | 1 cut(s) | 1060 |
| BsrI | ACTGG | 5 cut(s) | 840, 1204, 2137, 3102, 3679 |
| BssAI | RCCGGY | 1 cut(s) | 1060 |
| BssSI | CACGAG | 1 cut(s) | 3210 |
| BssT1I | CCWWGG | 3 cut(s) | 882, 1513, 2892 |
| Bst2BI | CACGAG | 1 cut(s) | 3210 |
| Bst2UI | CCWGG | 3 cut(s) | 97, 3321, 3398 |
| Bst6I | CTCTTC | 6 cut(s) | 384, 678, 1569, 1734, 3301, 3512 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 335, 3386 |
| BstC8I | GCNNGC | 4 cut(s) | 857, 1617, 1907, 3657 |
| BstDSI | CCRYGG | 3 cut(s) | 174, 470, 1001 |
| BstF5I | GGATG | 7 cut(s) | 628, 878, 1162, 1366, 3042, 3046, 3442 |
| BstFNI | CGCG | 1 cut(s) | 176 |
| BstH2I | RGCGCY | 1 cut(s) | 856 |
| BstHHI | GCGC | 3 cut(s) | 141, 855, 2200 |
| BstMAI | GTCTC | 9 cut(s) | 97, 386, 471, 480, 597, 606, 675, 2421, 3140 |
| BstNI | CCWGG | 3 cut(s) | 97, 3321, 3398 |
| BstNSI | RCATGY | 5 cut(s) | 1402, 1482, 1921, 1933, 3568 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 447 |
| BstSCI | CCNGG | 5 cut(s) | 34, 35, 95, 3319, 3396 |
| BstSFI | CTRYAG | 4 cut(s) | 401, 1216, 1272, 3378 |
| BstSLI | GKGCMC | 1 cut(s) | 1661 |
| BstUI | CGCG | 1 cut(s) | 176 |
| BstV2I | GAAGAC | 3 cut(s) | 678, 929, 1319 |
| BstX2I | RGATCY | 3 cut(s) | 104, 817, 3110 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3202 |
| BstYI | RGATCY | 3 cut(s) | 104, 817, 3110 |
| BsuRI | GGCC | 5 cut(s) | 152, 1140, 3117, 3185, 3238 |
| BtgI | CCRYGG | 3 cut(s) | 174, 470, 1001 |
| BtgZI | GCGATG | 1 cut(s) | 2166 |
| BtsCI | GGATG | 7 cut(s) | 628, 878, 1162, 1366, 3042, 3046, 3442 |
| BtsI | GCAGTG | 5 cut(s) | 1086, 1374, 2818, 2868, 3164 |
| BveI | ACCTGC | 3 cut(s) | 690, 2562, 2627 |
| Cac8I | GCNNGC | 4 cut(s) | 857, 1617, 1907, 3657 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1421, 3386 |
| CciI | TCATGA | 3 cut(s) | 2760, 2874, 3142 |
| CfoI | GCGC | 3 cut(s) | 141, 855, 2200 |
| Cfr10I | RCCGGY | 1 cut(s) | 1060 |
| Cfr13I | GGNCC | 3 cut(s) | 449, 702, 1139 |
| Cfr42I | CCGCGG | 1 cut(s) | 177 |
| Cfr9I | CCCGGG | 1 cut(s) | 35 |
| CseI | GACGC | 2 cut(s) | 543, 1363 |
| Csp6I | GTAC | 8 cut(s) | 376, 542, 1128, 1943, 1974, 2828, 3375, 3556 |
| CspAI | ACCGGT | 1 cut(s) | 1060 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 327, 362 |
| CviQI | GTAC | 8 cut(s) | 376, 542, 1128, 1943, 1974, 2828, 3375, 3556 |
| DraI | TTTAAA | 1 cut(s) | 1851 |
| DraIII | CACNNNGTG | 2 cut(s) | 193, 734 |
| EaeI | YGGCCR | 2 cut(s) | 150, 3236 |
| Eam1104I | CTCTTC | 6 cut(s) | 384, 678, 1569, 1734, 3301, 3512 |
| EarI | CTCTTC | 6 cut(s) | 384, 678, 1569, 1734, 3301, 3512 |
| EciI | GGCGGA | 3 cut(s) | 75, 81, 160 |
| Ecl136II | GAGCTC | 2 cut(s) | 2975, 3590 |
| Eco130I | CCWWGG | 3 cut(s) | 882, 1513, 2892 |
| Eco24I | GRGCYC | 5 cut(s) | 35, 652, 2485, 2977, 3592 |
| Eco31I | GGTCTC | 2 cut(s) | 480, 597 |
| Eco32I | GATATC | 1 cut(s) | 2288 |
| Eco47I | GGWCC | 2 cut(s) | 449, 702 |
| Eco53kI | GAGCTC | 2 cut(s) | 2975, 3590 |
| Eco57I | CTGAAG | 8 cut(s) | 35, 1968, 2637, 2646, 3503, 3554, 3617, 3635 |
| Eco88I | CYCGRG | 3 cut(s) | 35, 1185, 3448 |
| EcoICRI | GAGCTC | 2 cut(s) | 2975, 3590 |
| EcoO109I | RGGNCCY | 1 cut(s) | 702 |
| EcoRI | GAATTC | 3 cut(s) | 234, 1879, 2584 |
| EcoRII | CCWGG | 3 cut(s) | 95, 3319, 3396 |
| EcoRV | GATATC | 1 cut(s) | 2288 |
| EcoT14I | CCWWGG | 3 cut(s) | 882, 1513, 2892 |
| EcoT22I | ATGCAT | 2 cut(s) | 2126, 2278 |
| EcoT38I | GRGCYC | 5 cut(s) | 35, 652, 2485, 2977, 3592 |
| ErhI | CCWWGG | 3 cut(s) | 882, 1513, 2892 |
| FaqI | GGGAC | 3 cut(s) | 257, 901, 1432 |
| FokI | GGATG | 7 cut(s) | 615, 865, 1169, 1373, 3049, 3053, 3449 |
| FriOI | GRGCYC | 5 cut(s) | 35, 652, 2485, 2977, 3592 |
| FspBI | CTAG | 8 cut(s) | 384, 546, 663, 941, 1326, 1862, 2283, 3137 |
| GlaI | GCGC | 3 cut(s) | 140, 854, 2199 |
| GsaI | CCCAGC | 1 cut(s) | 329 |
| GsuI | CTGGAG | 3 cut(s) | 79, 666, 2154 |
| HaeII | RGCGCY | 1 cut(s) | 856 |
| HaeIII | GGCC | 5 cut(s) | 152, 1140, 3117, 3185, 3238 |
| HapII | CCGG | 7 cut(s) | 23, 36, 457, 632, 1061, 1166, 1822 |
| HgaI | GACGC | 2 cut(s) | 543, 1363 |
| HhaI | GCGC | 3 cut(s) | 141, 855, 2200 |
| Hin6I | GCGC | 3 cut(s) | 139, 853, 2198 |
| HinP1I | GCGC | 3 cut(s) | 139, 853, 2198 |
| HincII | GTYRAC | 3 cut(s) | 998, 3058, 3406 |
| HindII | GTYRAC | 3 cut(s) | 998, 3058, 3406 |
| HindIII | AAGCTT | 5 cut(s) | 225, 1613, 1907, 2205, 2225 |
| HpaII | CCGG | 7 cut(s) | 23, 36, 457, 632, 1061, 1166, 1822 |
| HphI | GGTGA | 2 cut(s) | 1050, 1180 |
| Hpy166II | GTNNAC | 7 cut(s) | 424, 998, 1223, 2300, 2696, 3058, 3406 |
| Hpy8I | GTNNAC | 7 cut(s) | 424, 998, 1223, 2300, 2696, 3058, 3406 |
| Hpy99I | CGWCG | 2 cut(s) | 268, 2529 |
| HpyAV | CCTTC | 9 cut(s) | 270, 377, 663, 1065, 1943, 2426, 2507, 3326, 3478 |
| HpyCH4IV | ACGT | 4 cut(s) | 840, 1093, 1126, 3402 |
| HpySE526I | ACGT | 4 cut(s) | 840, 1093, 1126, 3402 |
| HspAI | GCGC | 3 cut(s) | 139, 853, 2198 |
| KspI | CCGCGG | 1 cut(s) | 177 |
| LmnI | GCTCC | 6 cut(s) | 30, 219, 316, 647, 1993, 2980 |
| MaeI | CTAG | 8 cut(s) | 384, 546, 663, 941, 1326, 1862, 2283, 3137 |
| MaeII | ACGT | 4 cut(s) | 840, 1093, 1126, 3402 |
| MaeIII | GTNAC | 9 cut(s) | 193, 440, 1063, 1211, 2137, 2549, 2942, 3205, 3354 |
| MflI | RGATCY | 3 cut(s) | 104, 817, 3110 |
| MhlI | GDGCHC | 8 cut(s) | 35, 216, 652, 1175, 1661, 2485, 2977, 3592 |
| MlsI | TGGCCA | 1 cut(s) | 3238 |
| MluNI | TGGCCA | 1 cut(s) | 3238 |
| MlyI | GAGTC | 4 cut(s) | 99, 688, 2145, 3440 |
| MmeI | TCCRAC | 3 cut(s) | 2507, 3014, 3274 |
| Mox20I | TGGCCA | 1 cut(s) | 3238 |
| Mph1103I | ATGCAT | 2 cut(s) | 2126, 2278 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1896, 2754 |
| MscI | TGGCCA | 1 cut(s) | 3238 |
| MseI | TTAA | 9 cut(s) | 708, 1331, 1461, 1850, 2223, 2546, 2780, 2907, 2925 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1218, 2811 |
| Msp20I | TGGCCA | 1 cut(s) | 3238 |
| MspA1I | CMGCKG | 4 cut(s) | 136, 176, 3221, 3655 |
| MspI | CCGG | 7 cut(s) | 23, 36, 457, 632, 1061, 1166, 1822 |
| MspR9I | CCNGG | 5 cut(s) | 36, 37, 97, 3321, 3398 |
| Mva1269I | GAATGC | 2 cut(s) | 1306, 2536 |
| MvaI | CCWGG | 3 cut(s) | 97, 3321, 3398 |
| MvnI | CGCG | 1 cut(s) | 176 |
| NciI | CCSGG | 2 cut(s) | 36, 37 |
| NlaIV | GGNNCC | 3 cut(s) | 32, 649, 3314 |
| NmeAIII | GCCGAG | 1 cut(s) | 167 |
| NmuCI | GTSAC | 6 cut(s) | 193, 440, 1211, 2137, 2549, 2942 |
| NsiI | ATGCAT | 2 cut(s) | 2126, 2278 |
| NspI | RCATGY | 5 cut(s) | 1402, 1482, 1921, 1933, 3568 |
| OliI | CACNNNNGTG | 1 cut(s) | 1218 |
| PaeR7I | CTCGAG | 1 cut(s) | 3448 |
| PagI | TCATGA | 3 cut(s) | 2760, 2874, 3142 |
| PaqCI | CACCTGC | 1 cut(s) | 2627 |
| PciI | ACATGT | 2 cut(s) | 1398, 1929 |
| PctI | GAATGC | 2 cut(s) | 1306, 2536 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1896, 2754 |
| PfoI | TCCNGGA | 1 cut(s) | 3396 |
| PinAI | ACCGGT | 1 cut(s) | 1060 |
| PleI | GAGTC | 4 cut(s) | 98, 687, 2144, 3440 |
| PpsI | GAGTC | 4 cut(s) | 98, 687, 2144, 3440 |
| PpuMI | RGGWCCY | 1 cut(s) | 702 |
| PscI | ACATGT | 2 cut(s) | 1398, 1929 |
| PshAI | GACNNNNGTC | 1 cut(s) | 447 |
| PshBI | ATTAAT | 2 cut(s) | 2907, 2925 |
| Psp124BI | GAGCTC | 2 cut(s) | 2977, 3592 |
| Psp5II | RGGWCCY | 1 cut(s) | 702 |
| Psp6I | CCWGG | 3 cut(s) | 95, 3319, 3396 |
| PspFI | CCCAGC | 1 cut(s) | 325 |
| PspGI | CCWGG | 3 cut(s) | 95, 3319, 3396 |
| PspN4I | GGNNCC | 3 cut(s) | 32, 649, 3314 |
| PspPI | GGNCC | 3 cut(s) | 449, 702, 1139 |
| PspPPI | RGGWCCY | 1 cut(s) | 702 |
| PspXI | VCTCGAGB | 1 cut(s) | 3448 |
| PstI | CTGCAG | 3 cut(s) | 405, 1276, 3382 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1421, 3386 |
| PsuI | RGATCY | 3 cut(s) | 104, 817, 3110 |
| PvuII | CAGCTG | 2 cut(s) | 3221, 3655 |
| RsaI | GTAC | 8 cut(s) | 377, 543, 1129, 1944, 1975, 2829, 3376, 3557 |
| RsaNI | GTAC | 8 cut(s) | 376, 542, 1128, 1943, 1974, 2828, 3375, 3556 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1218, 2811 |
| SacI | GAGCTC | 2 cut(s) | 2977, 3592 |
| SacII | CCGCGG | 1 cut(s) | 177 |
| SaqAI | TTAA | 9 cut(s) | 708, 1331, 1461, 1850, 2223, 2546, 2780, 2907, 2925 |
| Sau96I | GGNCC | 3 cut(s) | 449, 702, 1139 |
| SchI | GAGTC | 4 cut(s) | 99, 688, 2145, 3440 |
| ScrFI | CCNGG | 5 cut(s) | 36, 37, 97, 3321, 3398 |
| SduI | GDGCHC | 8 cut(s) | 35, 216, 652, 1175, 1661, 2485, 2977, 3592 |
| SfcI | CTRYAG | 4 cut(s) | 401, 1216, 1272, 3378 |
| Sfr274I | CTCGAG | 1 cut(s) | 3448 |
| Sfr303I | CCGCGG | 1 cut(s) | 177 |
| SgrBI | CCGCGG | 1 cut(s) | 177 |
| SinI | GGWCC | 2 cut(s) | 449, 702 |
| SlaI | CTCGAG | 1 cut(s) | 3448 |
| SmaI | CCCGGG | 1 cut(s) | 37 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1218, 2811 |
| SmlI | CTYRAG | 7 cut(s) | 116, 1448, 1584, 1813, 2254, 2968, 3448 |
| SmoI | CTYRAG | 7 cut(s) | 116, 1448, 1584, 1813, 2254, 2968, 3448 |
| SspI | AATATT | 2 cut(s) | 1702, 2929 |
| SspMI | CTAG | 8 cut(s) | 384, 546, 663, 941, 1326, 1862, 2283, 3137 |
| SstI | GAGCTC | 2 cut(s) | 2977, 3592 |
| StyD4I | CCNGG | 5 cut(s) | 34, 35, 95, 3319, 3396 |
| StyI | CCWWGG | 3 cut(s) | 882, 1513, 2892 |
| TaiI | ACGT | 4 cut(s) | 843, 1096, 1129, 3405 |
| TaqI | TCGA | 5 cut(s) | 44, 232, 263, 3449, 3529 |
| TatI | WGTACW | 1 cut(s) | 3374 |
| TauI | GCSGC | 6 cut(s) | 127, 136, 176, 179, 1367, 2844 |
| Tru1I | TTAA | 9 cut(s) | 708, 1331, 1461, 1850, 2223, 2546, 2780, 2907, 2925 |
| Tru9I | TTAA | 9 cut(s) | 708, 1331, 1461, 1850, 2223, 2546, 2780, 2907, 2925 |
| TseFI | GTSAC | 6 cut(s) | 193, 440, 1211, 2137, 2549, 2942 |
| Tsp45I | GTSAC | 6 cut(s) | 193, 440, 1211, 2137, 2549, 2942 |
| TspDTI | ATGAA | 7 cut(s) | 1511, 1889, 2130, 2492, 2799, 2925, 3621 |
| TspGWI | ACGGA | 2 cut(s) | 2390, 2845 |
| TspMI | CCCGGG | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 2 cut(s) | 449, 702 |
| VspI | ATTAAT | 2 cut(s) | 2907, 2925 |
| XapI | RAATTY | 4 cut(s) | 234, 1879, 2584, 3416 |
| XbaI | TCTAGA | 3 cut(s) | 940, 1325, 2282 |
| XceI | RCATGY | 5 cut(s) | 1402, 1482, 1921, 1933, 3568 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2804 |
| XhoI | CTCGAG | 1 cut(s) | 3448 |
| XmaI | CCCGGG | 1 cut(s) | 35 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1896, 2754 |
| XspI | CTAG | 8 cut(s) | 384, 546, 663, 941, 1326, 1862, 2283, 3137 |
| Zsp2I | ATGCAT | 2 cut(s) | 2126, 2278 |