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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12590 AT3G12590 |
| fragaria_vesca | FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g22001 FvH4_7g22001 |
| malus_domestica | MD01G1124000.v1.1 MD07G1194200.v1.1 |
| prunus_persica | Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 |
| pyrus_communis | pycom01g15050 pycom07g18300 |
| rosa_chinensis | RchiOBHm_Chr1g0366301 |
| rosa_laevigata | RLG00000027354 |
| rosa_multiflora | Rmu_co8229963.1_g000001 Rmu_co8389475.1_g000001 Rmu_ssc0000250.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290010 Rroxscaffold_4G00290260 |
| rosa_rugosa | Rorug01G0328600 Rorug01G0328600 Rorug01G0328700.1 |
| rosa_samantha | Rh1AG336900 Rh1BG298500 Rh1CG313800 Rh1DG329900 |
| rosa_wichuraiana | Rw1G029870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 723 |
| Acc36I | ACCTGC | 2 cut(s) | 2523, 3567 |
| AccI | GTMKAC | 1 cut(s) | 12 |
| AccII | CGCG | 1 cut(s) | 864 |
| AclWI | GGATC | 2 cut(s) | 657, 3347 |
| AcoI | YGGCCR | 3 cut(s) | 54, 162, 3206 |
| AcsI | RAATTY | 9 cut(s) | 219, 871, 1840, 2221, 2297, 2545, 2586, 2745, 3386 |
| AcuI | CTGAAG | 8 cut(s) | 32, 1394, 1929, 2184, 2607, 2619, 3482, 3563 |
| AcvI | CACGTG | 2 cut(s) | 1055, 3182 |
| AcyI | GRCGYC | 2 cut(s) | 152, 720 |
| AfaI | GTAC | 7 cut(s) | 362, 510, 1905, 1936, 2289, 3346, 3485 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 518, 672, 1065, 1066, 3292 |
| AflIII | ACRYGT | 5 cut(s) | 1359, 1439, 1890, 3179, 3181 |
| AhlI | ACTAGT | 2 cut(s) | 1822, 3071 |
| AjnI | CCWGG | 4 cut(s) | 517, 1145, 3048, 3366 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 414, 446, 631, 663, 3480, 3512 |
| AleI | CACNNNNGTG | 2 cut(s) | 594, 1179 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2324, 2356 |
| Alw21I | GWGCWC | 2 cut(s) | 1136, 3520 |
| Alw26I | GTCTC | 9 cut(s) | 371, 456, 558, 567, 927, 1916, 1933, 2879, 3110 |
| AlwI | GGATC | 2 cut(s) | 657, 3347 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1607 |
| Ama87I | CYCGRG | 5 cut(s) | 32, 592, 3088, 3290, 3418 |
| AoxI | GGCC | 7 cut(s) | 54, 162, 1099, 2442, 3085, 3206, 3294 |
| ApoI | RAATTY | 9 cut(s) | 219, 871, 1840, 2221, 2297, 2545, 2586, 2745, 3386 |
| AseI | ATTAAT | 2 cut(s) | 2073, 2880 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1857, 2727 |
| AspLEI | GCGC | 4 cut(s) | 306, 816, 1200, 1819 |
| AspS9I | GGNCC | 5 cut(s) | 434, 1100, 2442, 3086, 3294 |
| AsuC2I | CCSGG | 9 cut(s) | 21, 33, 34, 593, 594, 3089, 3090, 3291, 3292 |
| AsuHPI | GGTGA | 3 cut(s) | 1011, 1248, 2206 |
| AvaI | CYCGRG | 5 cut(s) | 32, 592, 3088, 3290, 3418 |
| AvaII | GGWCC | 1 cut(s) | 434 |
| AxyI | CCTNAGG | 1 cut(s) | 356 |
| BaeGI | GKGCMC | 1 cut(s) | 1060 |
| BalI | TGGCCA | 1 cut(s) | 3208 |
| BanII | GRGCYC | 3 cut(s) | 32, 613, 3520 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 366, 398 |
| BbrPI | CACGTG | 2 cut(s) | 1055, 3182 |
| BbsI | GAAGAC | 1 cut(s) | 639 |
| Bbv12I | GWGCWC | 2 cut(s) | 1136, 3520 |
| BbvCI | CCTCAGC | 3 cut(s) | 1212, 1627, 3439 |
| BccI | CCATC | 7 cut(s) | 247, 761, 1609, 2493, 2694, 3008, 3121 |
| BceAI | ACGGC | 4 cut(s) | 1297, 2153, 2279, 3245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 377, 411 |
| BciT130I | CCWGG | 4 cut(s) | 519, 1147, 3050, 3368 |
| BclI | TGATCA | 1 cut(s) | 1000 |
| BcnI | CCSGG | 9 cut(s) | 21, 33, 34, 593, 594, 3089, 3090, 3291, 3292 |
| BcoDI | GTCTC | 9 cut(s) | 371, 456, 558, 567, 927, 1916, 1933, 2879, 3110 |
| BcuI | ACTAGT | 2 cut(s) | 1822, 3071 |
| BfoI | RGCGCY | 2 cut(s) | 817, 1820 |
| BfuAI | ACCTGC | 2 cut(s) | 2523, 3567 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BglII | AGATCT | 3 cut(s) | 92, 778, 3080 |
| BlpI | GCTNAGC | 3 cut(s) | 680, 1572, 3519 |
| Bme18I | GGWCC | 1 cut(s) | 434 |
| BmeT110I | CYCGRG | 5 cut(s) | 32, 592, 3088, 3290, 3418 |
| BmgT120I | GGNCC | 5 cut(s) | 434, 1100, 2442, 3086, 3294 |
| BmiI | GGNNCC | 6 cut(s) | 29, 120, 610, 702, 3284, 3295 |
| BmrI | ACTGGG | 2 cut(s) | 705, 3612 |
| BmuI | ACTGGG | 2 cut(s) | 705, 3612 |
| BpiI | GAAGAC | 1 cut(s) | 639 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1913, 1945, 2935, 2967 |
| BpmI | CTGGAG | 3 cut(s) | 627, 1110, 2312 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1212, 1627, 3439 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 680, 1572, 3519 |
| BpuEI | CTTGAG | 7 cut(s) | 861, 1084, 1530, 1915, 2015, 2840, 2962 |
| BpuMI | CCSGG | 9 cut(s) | 21, 33, 34, 593, 594, 3089, 3090, 3291, 3292 |
| Bsa29I | ATCGAT | 1 cut(s) | 3125 |
| BsaAI | YACGTR | 2 cut(s) | 1055, 3182 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2843 |
| BsaHI | GRCGYC | 2 cut(s) | 152, 720 |
| BsaI | GGTCTC | 1 cut(s) | 558 |
| BsaWI | WCCGGW | 2 cut(s) | 441, 1782 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 518, 672, 1065, 1066, 3292 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| Bse1I | ACTGG | 5 cut(s) | 700, 1022, 1127, 2295, 3607 |
| Bse21I | CCTNAGG | 1 cut(s) | 356 |
| Bse3DI | GCAATG | 3 cut(s) | 288, 1227, 1861 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2843 |
| BseBI | CCWGG | 4 cut(s) | 519, 1147, 3050, 3368 |
| BseCI | ATCGAT | 1 cut(s) | 3125 |
| BseGI | GGATG | 6 cut(s) | 239, 1327, 1519, 2026, 3019, 3058 |
| BseJI | GATNNNNATC | 1 cut(s) | 2843 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 518, 672, 1065, 1066, 3292 |
| BseMI | GCAATG | 3 cut(s) | 288, 1227, 1861 |
| BseMII | CTCAG | 9 cut(s) | 80, 215, 285, 820, 1203, 1236, 1641, 3453, 3533 |
| BseNI | ACTGG | 5 cut(s) | 700, 1022, 1127, 2295, 3607 |
| BseRI | GAGGAG | 6 cut(s) | 78, 81, 90, 1380, 1615, 3427 |
| BseSI | GKGCMC | 1 cut(s) | 1060 |
| BseYI | CCCAGC | 2 cut(s) | 368, 2769 |
| BsgI | GTGCAG | 6 cut(s) | 672, 933, 1035, 2418, 3117, 3249 |
| Bsh1236I | CGCG | 1 cut(s) | 864 |
| BshFI | GGCC | 7 cut(s) | 56, 164, 1101, 2444, 3087, 3208, 3296 |
| BshVI | ATCGAT | 1 cut(s) | 3125 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1136, 3520 |
| BsiHKCI | CYCGRG | 5 cut(s) | 32, 592, 3088, 3290, 3418 |
| BslFI | GGGAC | 6 cut(s) | 36, 535, 1128, 1130, 1393, 3288 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 518, 672, 1065, 1066, 3292 |
| BsmAI | GTCTC | 9 cut(s) | 371, 456, 558, 567, 927, 1916, 1933, 2879, 3110 |
| BsmFI | GGGAC | 6 cut(s) | 36, 535, 1128, 1130, 1393, 3288 |
| BsmI | GAATGC | 2 cut(s) | 2452, 2497 |
| BsnI | GGCC | 7 cut(s) | 56, 164, 1101, 2444, 3087, 3208, 3296 |
| Bso31I | GGTCTC | 1 cut(s) | 558 |
| BsoBI | CYCGRG | 5 cut(s) | 32, 592, 3088, 3290, 3418 |
| Bsp1286I | GDGCHC | 5 cut(s) | 32, 613, 1060, 1136, 3520 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 680, 1572, 3519 |
| BspANI | GGCC | 7 cut(s) | 56, 164, 1101, 2444, 3087, 3208, 3296 |
| BspCNI | CTCAG | 9 cut(s) | 81, 216, 286, 819, 1204, 1237, 1640, 3452, 3532 |
| BspDI | ATCGAT | 1 cut(s) | 3125 |
| BspFNI | CGCG | 1 cut(s) | 864 |
| BspHI | TCATGA | 3 cut(s) | 2605, 2733, 2847 |
| BspLI | GGNNCC | 6 cut(s) | 29, 120, 610, 702, 3284, 3295 |
| BspMAI | CTGCAG | 6 cut(s) | 316, 390, 1237, 2617, 3352, 3564 |
| BspMI | ACCTGC | 2 cut(s) | 2523, 3567 |
| BspPI | GGATC | 2 cut(s) | 657, 3347 |
| BspTNI | GGTCTC | 1 cut(s) | 558 |
| BsrDI | GCAATG | 3 cut(s) | 288, 1227, 1861 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BsrI | ACTGG | 5 cut(s) | 700, 1022, 1127, 2295, 3607 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssNI | GRCGYC | 2 cut(s) | 152, 720 |
| BssT1I | CCWWGG | 4 cut(s) | 575, 962, 1474, 2865 |
| Bst2UI | CCWGG | 4 cut(s) | 519, 1147, 3050, 3368 |
| Bst4CI | ACNGT | 7 cut(s) | 17, 1008, 1181, 1565, 1927, 2258, 2786 |
| Bst6I | CTCTTC | 2 cut(s) | 369, 1695 |
| BstACI | GRCGYC | 2 cut(s) | 152, 720 |
| BstBAI | YACGTR | 2 cut(s) | 1055, 3182 |
| BstF5I | GGATG | 6 cut(s) | 239, 1327, 1519, 2026, 3019, 3058 |
| BstFNI | CGCG | 1 cut(s) | 864 |
| BstH2I | RGCGCY | 2 cut(s) | 817, 1820 |
| BstHHI | GCGC | 4 cut(s) | 306, 816, 1200, 1819 |
| BstMAI | GTCTC | 9 cut(s) | 371, 456, 558, 567, 927, 1916, 1933, 2879, 3110 |
| BstNI | CCWGG | 4 cut(s) | 519, 1147, 3050, 3368 |
| BstNSI | RCATGY | 6 cut(s) | 1363, 1443, 1882, 1894, 2085, 2578 |
| BstSLI | GKGCMC | 1 cut(s) | 1060 |
| BstUI | CGCG | 1 cut(s) | 864 |
| BstV2I | GAAGAC | 1 cut(s) | 639 |
| BstX2I | RGATCY | 5 cut(s) | 92, 662, 778, 3080, 3352 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3172, 3374 |
| BstYI | RGATCY | 5 cut(s) | 92, 662, 778, 3080, 3352 |
| Bsu15I | ATCGAT | 1 cut(s) | 3125 |
| Bsu36I | CCTNAGG | 1 cut(s) | 356 |
| BsuRI | GGCC | 7 cut(s) | 56, 164, 1101, 2444, 3087, 3208, 3296 |
| BsuTUI | ATCGAT | 1 cut(s) | 3125 |
| BtsCI | GGATG | 6 cut(s) | 239, 1327, 1519, 2026, 3019, 3058 |
| BtsI | GCAGTG | 3 cut(s) | 1335, 2841, 3134 |
| BtsIMutI | CAGTG | 9 cut(s) | 693, 1134, 1186, 1335, 1570, 2263, 2791, 2841, 3134 |
| BveI | ACCTGC | 2 cut(s) | 2523, 3567 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1607 |
| CciI | TCATGA | 3 cut(s) | 2605, 2733, 2847 |
| CfoI | GCGC | 4 cut(s) | 306, 816, 1200, 1819 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 5 cut(s) | 434, 1100, 2442, 3086, 3294 |
| Cfr9I | CCCGGG | 4 cut(s) | 32, 592, 3088, 3290 |
| ClaI | ATCGAT | 1 cut(s) | 3125 |
| CseI | GACGC | 4 cut(s) | 141, 462, 1324, 2148 |
| Csp6I | GTAC | 7 cut(s) | 361, 509, 1904, 1935, 2288, 3345, 3484 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 312, 347 |
| CviQI | GTAC | 7 cut(s) | 361, 509, 1904, 1935, 2288, 3345, 3484 |
| DraI | TTTAAA | 2 cut(s) | 1659, 3453 |
| EaeI | YGGCCR | 3 cut(s) | 54, 162, 3206 |
| Eam1104I | CTCTTC | 2 cut(s) | 369, 1695 |
| EarI | CTCTTC | 2 cut(s) | 369, 1695 |
| EciI | GGCGGA | 2 cut(s) | 75, 155 |
| Ecl136II | GAGCTC | 1 cut(s) | 3518 |
| Eco130I | CCWWGG | 4 cut(s) | 575, 962, 1474, 2865 |
| Eco24I | GRGCYC | 3 cut(s) | 32, 613, 3520 |
| Eco31I | GGTCTC | 1 cut(s) | 558 |
| Eco32I | GATATC | 1 cut(s) | 2249 |
| Eco47I | GGWCC | 1 cut(s) | 434 |
| Eco53kI | GAGCTC | 1 cut(s) | 3518 |
| Eco57I | CTGAAG | 8 cut(s) | 32, 1394, 1929, 2184, 2607, 2619, 3482, 3563 |
| Eco72I | CACGTG | 2 cut(s) | 1055, 3182 |
| Eco81I | CCTNAGG | 1 cut(s) | 356 |
| Eco88I | CYCGRG | 5 cut(s) | 32, 592, 3088, 3290, 3418 |
| EcoICRI | GAGCTC | 1 cut(s) | 3518 |
| EcoRI | GAATTC | 4 cut(s) | 219, 1840, 2221, 2545 |
| EcoRII | CCWGG | 4 cut(s) | 517, 1145, 3048, 3366 |
| EcoRV | GATATC | 1 cut(s) | 2249 |
| EcoT14I | CCWWGG | 4 cut(s) | 575, 962, 1474, 2865 |
| EcoT22I | ATGCAT | 1 cut(s) | 2087 |
| EcoT38I | GRGCYC | 3 cut(s) | 32, 613, 3520 |
| ErhI | CCWWGG | 4 cut(s) | 575, 962, 1474, 2865 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 631, 663, 1560, 1592 |
| FaqI | GGGAC | 6 cut(s) | 36, 535, 1128, 1130, 1393, 3288 |
| FauI | CCCGC | 1 cut(s) | 123 |
| FauNDI | CATATG | 2 cut(s) | 2349, 3492 |
| FbaI | TGATCA | 1 cut(s) | 1000 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| FokI | GGATG | 6 cut(s) | 226, 1334, 1526, 2033, 3026, 3065 |
| FriOI | GRGCYC | 3 cut(s) | 32, 613, 3520 |
| GlaI | GCGC | 4 cut(s) | 305, 815, 1199, 1818 |
| GsaI | CCCAGC | 2 cut(s) | 372, 2773 |
| GsuI | CTGGAG | 3 cut(s) | 627, 1110, 2312 |
| HaeII | RGCGCY | 2 cut(s) | 817, 1820 |
| HaeIII | GGCC | 7 cut(s) | 56, 164, 1101, 2444, 3087, 3208, 3296 |
| HgaI | GACGC | 4 cut(s) | 141, 462, 1324, 2148 |
| HhaI | GCGC | 4 cut(s) | 306, 816, 1200, 1819 |
| Hin1I | GRCGYC | 2 cut(s) | 152, 720 |
| Hin6I | GCGC | 4 cut(s) | 304, 814, 1198, 1817 |
| HinP1I | GCGC | 4 cut(s) | 304, 814, 1198, 1817 |
| HincII | GTYRAC | 2 cut(s) | 477, 959 |
| HindII | GTYRAC | 2 cut(s) | 477, 959 |
| HindIII | AAGCTT | 4 cut(s) | 210, 1574, 1868, 2186 |
| HphI | GGTGA | 3 cut(s) | 1011, 1248, 2206 |
| Hpy166II | GTNNAC | 6 cut(s) | 13, 477, 959, 1184, 2261, 2288 |
| Hpy8I | GTNNAC | 6 cut(s) | 13, 477, 959, 1184, 2261, 2288 |
| Hpy99I | CGWCG | 5 cut(s) | 10, 103, 157, 160, 803 |
| HpyAV | CCTTC | 8 cut(s) | 644, 676, 1026, 2387, 2643, 3019, 3296, 3329 |
| HpyCH4III | ACNGT | 7 cut(s) | 17, 1008, 1181, 1565, 1927, 2258, 2786 |
| HpyCH4IV | ACGT | 5 cut(s) | 720, 801, 1054, 2989, 3181 |
| HpySE526I | ACGT | 5 cut(s) | 720, 801, 1054, 2989, 3181 |
| Hsp92I | GRCGYC | 2 cut(s) | 152, 720 |
| HspAI | GCGC | 4 cut(s) | 304, 814, 1198, 1817 |
| KroI | GCCGGC | 1 cut(s) | 56 |
| KroNI | GCCGGC | 1 cut(s) | 58 |
| Ksp22I | TGATCA | 1 cut(s) | 1000 |
| LmnI | GCTCC | 7 cut(s) | 27, 118, 301, 608, 1393, 1628, 1954 |
| MaeII | ACGT | 5 cut(s) | 720, 801, 1054, 2989, 3181 |
| MfeI | CAATTG | 3 cut(s) | 1527, 2933, 3170 |
| MflI | RGATCY | 5 cut(s) | 92, 662, 778, 3080, 3352 |
| MhlI | GDGCHC | 5 cut(s) | 32, 613, 1060, 1136, 3520 |
| MlsI | TGGCCA | 1 cut(s) | 3208 |
| MluNI | TGGCCA | 1 cut(s) | 3208 |
| MlyI | GAGTC | 2 cut(s) | 517, 3410 |
| MmeI | TCCRAC | 4 cut(s) | 910, 1454, 2259, 3244 |
| Mox20I | TGGCCA | 1 cut(s) | 3208 |
| Mph1103I | ATGCAT | 1 cut(s) | 2087 |
| MroNI | GCCGGC | 1 cut(s) | 56 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1857, 2727 |
| MscI | TGGCCA | 1 cut(s) | 3208 |
| MslI | CAYNNNNRTG | 5 cut(s) | 594, 728, 1179, 2490, 2784 |
| Msp20I | TGGCCA | 1 cut(s) | 3208 |
| MspA1I | CMGCKG | 4 cut(s) | 124, 1049, 1211, 3583 |
| MunI | CAATTG | 3 cut(s) | 1527, 2933, 3170 |
| Mva1269I | GAATGC | 2 cut(s) | 2452, 2497 |
| MvaI | CCWGG | 4 cut(s) | 519, 1147, 3050, 3368 |
| MvnI | CGCG | 1 cut(s) | 864 |
| NaeI | GCCGGC | 1 cut(s) | 58 |
| NciI | CCSGG | 9 cut(s) | 21, 33, 34, 593, 594, 3089, 3090, 3291, 3292 |
| NdeI | CATATG | 2 cut(s) | 2349, 3492 |
| NgoMIV | GCCGGC | 1 cut(s) | 56 |
| NlaIV | GGNNCC | 6 cut(s) | 29, 120, 610, 702, 3284, 3295 |
| NmuCI | GTSAC | 4 cut(s) | 459, 721, 1172, 2915 |
| NsiI | ATGCAT | 1 cut(s) | 2087 |
| NspI | RCATGY | 6 cut(s) | 1363, 1443, 1882, 1894, 2085, 2578 |
| OliI | CACNNNNGTG | 2 cut(s) | 594, 1179 |
| PaeI | GCATGC | 1 cut(s) | 2085 |
| PaeR7I | CTCGAG | 1 cut(s) | 3418 |
| PagI | TCATGA | 3 cut(s) | 2605, 2733, 2847 |
| PasI | CCCWGGG | 1 cut(s) | 1146 |
| PciI | ACATGT | 3 cut(s) | 1359, 1439, 1890 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 798 |
| PctI | GAATGC | 2 cut(s) | 2452, 2497 |
| PdiI | GCCGGC | 1 cut(s) | 58 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1857, 2727 |
| PfoI | TCCNGGA | 2 cut(s) | 19, 3366 |
| PleI | GAGTC | 2 cut(s) | 517, 3410 |
| PmaCI | CACGTG | 2 cut(s) | 1055, 3182 |
| PmlI | CACGTG | 2 cut(s) | 1055, 3182 |
| PpsI | GAGTC | 2 cut(s) | 517, 3410 |
| Ppu21I | YACGTR | 2 cut(s) | 1055, 3182 |
| PscI | ACATGT | 3 cut(s) | 1359, 1439, 1890 |
| PshBI | ATTAAT | 2 cut(s) | 2073, 2880 |
| Psp124BI | GAGCTC | 1 cut(s) | 3520 |
| Psp6I | CCWGG | 4 cut(s) | 517, 1145, 3048, 3366 |
| PspCI | CACGTG | 2 cut(s) | 1055, 3182 |
| PspFI | CCCAGC | 2 cut(s) | 368, 2769 |
| PspGI | CCWGG | 4 cut(s) | 517, 1145, 3048, 3366 |
| PspN4I | GGNNCC | 6 cut(s) | 29, 120, 610, 702, 3284, 3295 |
| PspPI | GGNCC | 5 cut(s) | 434, 1100, 2442, 3086, 3294 |
| PspXI | VCTCGAGB | 1 cut(s) | 3418 |
| PstI | CTGCAG | 6 cut(s) | 316, 390, 1237, 2617, 3352, 3564 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1607 |
| PsuI | RGATCY | 5 cut(s) | 92, 662, 778, 3080, 3352 |
| PvuII | CAGCTG | 2 cut(s) | 1211, 3583 |
| RsaI | GTAC | 7 cut(s) | 362, 510, 1905, 1936, 2289, 3346, 3485 |
| RsaNI | GTAC | 7 cut(s) | 361, 509, 1904, 1935, 2288, 3345, 3484 |
| RseI | CAYNNNNRTG | 5 cut(s) | 594, 728, 1179, 2490, 2784 |
| SacI | GAGCTC | 1 cut(s) | 3520 |
| Sau96I | GGNCC | 5 cut(s) | 434, 1100, 2442, 3086, 3294 |
| SchI | GAGTC | 2 cut(s) | 517, 3410 |
| SduI | GDGCHC | 5 cut(s) | 32, 613, 1060, 1136, 3520 |
| Sfr274I | CTCGAG | 1 cut(s) | 3418 |
| SinI | GGWCC | 1 cut(s) | 434 |
| SlaI | CTCGAG | 1 cut(s) | 3418 |
| SmaI | CCCGGG | 4 cut(s) | 34, 594, 3090, 3292 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 594, 728, 1179, 2490, 2784 |
| SmlI | CTYRAG | 8 cut(s) | 876, 1063, 1545, 1930, 1994, 2819, 2941, 3418 |
| SmoI | CTYRAG | 8 cut(s) | 876, 1063, 1545, 1930, 1994, 2819, 2941, 3418 |
| SpeI | ACTAGT | 2 cut(s) | 1822, 3071 |
| SphI | GCATGC | 1 cut(s) | 2085 |
| SspI | AATATT | 6 cut(s) | 754, 1663, 1773, 2476, 2566, 2902 |
| SstI | GAGCTC | 1 cut(s) | 3520 |
| StyI | CCWWGG | 4 cut(s) | 575, 962, 1474, 2865 |
| TaaI | ACNGT | 7 cut(s) | 17, 1008, 1181, 1565, 1927, 2258, 2786 |
| TaiI | ACGT | 5 cut(s) | 723, 804, 1057, 2992, 3184 |
| TaqI | TCGA | 7 cut(s) | 41, 101, 215, 798, 3125, 3145, 3419 |
| TatI | WGTACW | 2 cut(s) | 2287, 3344 |
| TauI | GCSGC | 4 cut(s) | 115, 124, 130, 164 |
| TscAI | CASTG | 9 cut(s) | 700, 1134, 1186, 1335, 1570, 2263, 2791, 2841, 3141 |
| TseFI | GTSAC | 4 cut(s) | 459, 721, 1172, 2915 |
| Tsp45I | GTSAC | 4 cut(s) | 459, 721, 1172, 2915 |
| TspGWI | ACGGA | 4 cut(s) | 40, 1526, 2117, 2351 |
| TspMI | CCCGGG | 4 cut(s) | 32, 592, 3088, 3290 |
| TspRI | CASTG | 9 cut(s) | 700, 1134, 1186, 1335, 1570, 2263, 2791, 2841, 3141 |
| VpaK11BI | GGWCC | 1 cut(s) | 434 |
| VspI | ATTAAT | 2 cut(s) | 2073, 2880 |
| XapI | RAATTY | 9 cut(s) | 219, 871, 1840, 2221, 2297, 2545, 2586, 2745, 3386 |
| XbaI | TCTAGA | 2 cut(s) | 1286, 2243 |
| XceI | RCATGY | 6 cut(s) | 1363, 1443, 1882, 1894, 2085, 2578 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3374 |
| XhoI | CTCGAG | 1 cut(s) | 3418 |
| XmaI | CCCGGG | 4 cut(s) | 32, 592, 3088, 3290 |
| XmiI | GTMKAC | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1857, 2727 |
| ZraI | GACGTC | 1 cut(s) | 721 |
| Zsp2I | ATGCAT | 1 cut(s) | 2087 |