Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002480

Physical Location & Seq

Genomic Coordinates Reverse (-)

20776905 .. 20780046

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGCTGTTGGACAGTGTAATGGAGAAACTTGGTGCAACAGTAAGCTCATTTACTCATTTGGACACAGAGTTCTCACACATGATGCAGATAACCAAATCTTACAAGTCTCTGGATAGCATTGAAGGTGCCGTTCTGAGAAATGGAGTTGGCATGAAAGCAAAACTCTCATGGGCTCTTTTACATTCCCTTCTTCATTCAGAAAGAATTGCTTACCATCGAAATGCGTATGTCTGGTTAAGTGACCTGCTTATTGCAGAAATTAGTGAGGAAGGGAATTCAAGTATTTTGTCAAATATAAAAAACATGCAGCAGAAAATTGCCCATGCCGGTGTTCATGATTCTTCAGTTGCTTCAGATGTTCCTTTGCCCATTTGGCTTATGTGTGGGCTTTTGAAGTCAAAGCACAACTCAATCAGATGGGGCTTTTTGTATGTTCTTGAAAGGCTTCTTATGAGGTGTAAGATTTTGTTAAATGAAAATAAAGTCCAGAAACATGGCAGTGATATTGGCAATGTACGGAGAGATAACCGTCTCGAGAAAGCTAGTGCAGTGATAGACATCATGAGTAGTGCCTTGTCCTTGGTTTTTCAGATCGATGAAGACAAAACGGATCGATCATTATTAATGTGTGCCATTCTATTCTCTCAATTATGCTTGAGAGCTCCATCTGCAAATACAACAGACTTTGGAGATGATGCACAGCTTGGTAGGGTTCTTAGACGGATGGACGGAAATAAAATAGTTGACGAGAAAGAGAGTTCTCACCAGGATGTTTGTATGGAAGAATCCAGTGGCAGATGTGGCCTCGGAAATAACAATCCTCTAGATCATGAGACAGAATCAATGGCAGCACTTCTTCTCCGAGGACAGGCCATAGTTCCCATGCAGTTGGTCACACGAGTTCCAGCTGCATTGTTTTATTGGCCATTGATTCAACTTGCTGGTGCAGCAACAGACAACATTGCGTTGGGTATAGCTGTTGGAAGCAAAGGAAGAGGGAACCTTCCTGGTGCAACATCTGATATACGGGCTACGCTTTTGTTACTTCTAATTGGTAAATGTACTGCAGATCCTGCTACTTTCCAGGAAGTTGGCGGGGAAGAATTTTTTAGGGAACTCTTGGATGATACAGACTCGAGGGTGGCATATTACTCATCAGCTTTTCTTCTGAAGCGAATGATGTCAGAAAAACCTGAAAAGTACCAGCACATGCTTCAGAATCTTGTTGTTAGAGCTCAGCAGAGCAACAATGAAAAGCTCTTGGAAAATCCATATCTTCAGATGCGTGGCATACTTCAGCTGGCAAACGATCTTGGAACCGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

443

Amino Acids

49.02

Weight (kDa)

6.2

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12590 AT3G12590
fragaria_vesca	FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g22001 FvH4_7g22001
malus_domestica	MD01G1124000.v1.1 MD07G1194200.v1.1
prunus_persica	Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1
pyrus_communis	pycom01g15050 pycom07g18300
rosa_chinensis	RchiOBHm_Chr1g0366301
rosa_laevigata	RLG00000027354
rosa_multiflora	Rmu_co8229963.1_g000001 Rmu_co8389475.1_g000001 Rmu_ssc0000250.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290010 Rroxscaffold_4G00290260
rosa_rugosa	Rorug01G0328600 Rorug01G0328600 Rorug01G0328700.1
rosa_samantha	Rh1AG336900 Rh1BG298500 Rh1CG313800 Rh1DG329900
rosa_wichuraiana	Rw1G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	1 cut(s)	1095
AclWI	GGATC	2 cut(s)	618, 1064
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	2 cut(s)	274, 1103
AcuI	CTGAAG	6 cut(s)	327, 336, 1190, 1199, 1262, 1280
AfaI	GTAC	3 cut(s)	516, 1063, 1202
AfiI	CCNNNNNNNGG	1 cut(s)	868
AgsI	TTSAA	5 cut(s)	122, 279, 394, 440, 935
AjnI	CCWGG	3 cut(s)	765, 1006, 1083
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
Alw21I	GWGCWC	2 cut(s)	664, 1237
Alw26I	GTCTC	3 cut(s)	111, 536, 827
AlwI	GGATC	2 cut(s)	618, 1064
AlwNI	CAGNNNCTG	1 cut(s)	1073
Ama87I	CYCGRG	2 cut(s)	533, 1135
AoxI	GGCC	3 cut(s)	802, 870, 923
ApeKI	GCWGC	4 cut(s)	307, 848, 908, 947
ApoI	RAATTY	2 cut(s)	274, 1103
AseI	ATTAAT	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	444
AsuC2I	CCSGG	1 cut(s)	1321
AsuHPI	GGTGA	1 cut(s)	755
AvaI	CYCGRG	2 cut(s)	533, 1135
BalI	TGGCCA	1 cut(s)	925
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	3 cut(s)	175, 664, 1237
BauI	CACGAG	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	664, 1237
BbvI	GCAGC	4 cut(s)	319, 860, 895, 959
BccI	CCATC	4 cut(s)	222, 411, 673, 718
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	767, 1008, 1085
BcnI	CCSGG	1 cut(s)	1321
BcoDI	GTCTC	3 cut(s)	111, 536, 827
BfaI	CTAG	2 cut(s)	543, 824
BfmI	CTRYAG	1 cut(s)	1065
BfuAI	ACCTGC	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	373
BisI	GCNGC	4 cut(s)	308, 849, 909, 948
BlpI	GCTNAGC	1 cut(s)	1236
BlsI	GCNGC	4 cut(s)	309, 850, 910, 949
Bme1390I	CCNGG	4 cut(s)	767, 1008, 1085, 1321
BmeT110I	CYCGRG	2 cut(s)	533, 1135
BmiI	GGNNCC	3 cut(s)	127, 1001, 1318
BmrFI	CCNGG	4 cut(s)	767, 1008, 1085, 1321
BmsI	GCATC	3 cut(s)	72, 685, 1272
BpiI	GAAGAC	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	1236
BpuEI	CTTGAG	1 cut(s)	676
BpuMI	CCSGG	1 cut(s)	1321
Bsa29I	ATCGAT	2 cut(s)	594, 613
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	579, 805, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	1 cut(s)	868
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	789
Bse3DI	GCAATG	2 cut(s)	517, 960
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	3 cut(s)	767, 1008, 1085
BseCI	ATCGAT	2 cut(s)	594, 613
BseDI	CCNNGG	3 cut(s)	579, 805, 862
BseGI	GGATG	3 cut(s)	729, 775, 1129
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	868
BseMI	GCAATG	2 cut(s)	517, 960
BseMII	CTCAG	2 cut(s)	125, 1250
BseNI	ACTGG	1 cut(s)	789
BseXI	GCAGC	4 cut(s)	319, 860, 895, 959
BsgI	GTGCAG	2 cut(s)	567, 966
BshFI	GGCC	3 cut(s)	804, 872, 925
BshNI	GGYRCC	1 cut(s)	125
BshVI	ATCGAT	2 cut(s)	594, 613
BsiHKAI	GWGCWC	2 cut(s)	664, 1237
BsiHKCI	CYCGRG	2 cut(s)	533, 1135
BsiSI	CCGG	2 cut(s)	327, 1320
BslI	CCNNNNNNNGG	1 cut(s)	868
BsmAI	GTCTC	3 cut(s)	111, 536, 827
BsmBI	CGTCTC	1 cut(s)	536
BsnI	GGCC	3 cut(s)	804, 872, 925
BsoBI	CYCGRG	2 cut(s)	533, 1135
Bsp1286I	GDGCHC	3 cut(s)	175, 664, 1237
Bsp143I	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
Bsp1720I	GCTNAGC	1 cut(s)	1236
BspACI	CCGC	1 cut(s)	1095
BspANI	GGCC	3 cut(s)	804, 872, 925
BspCNI	CTCAG	2 cut(s)	126, 1249
BspDI	ATCGAT	2 cut(s)	594, 613
BspHI	TCATGA	3 cut(s)	334, 561, 829
BspLI	GGNNCC	3 cut(s)	127, 1001, 1318
BspMAI	CTGCAG	1 cut(s)	1069
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	618, 1064
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	517, 960
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	789
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	579, 805, 862
BssMI	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	3 cut(s)	767, 1008, 1085
Bst4CI	ACNGT	3 cut(s)	14, 40, 530
Bst6I	CTCTTC	1 cut(s)	988
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstC8I	GCNNGC	1 cut(s)	1302
BstDEI	CTNAG	3 cut(s)	134, 716, 1236
BstF5I	GGATG	3 cut(s)	729, 775, 1129
BstKTI	GATC	6 cut(s)	594, 613, 617, 829, 1072, 1312
BstMAI	GTCTC	3 cut(s)	111, 536, 827
BstMBI	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
BstMWI	GCNNNNNNNGC	5 cut(s)	373, 668, 801, 947, 1073
BstNI	CCWGG	3 cut(s)	767, 1008, 1085
BstNSI	RCATGY	2 cut(s)	307, 1213
BstSCI	CCNGG	4 cut(s)	765, 1006, 1083, 1319
BstSFI	CTRYAG	1 cut(s)	1065
BstV1I	GCAGC	4 cut(s)	319, 860, 895, 959
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	1069
BstXI	CCANNNNNNTGG	3 cut(s)	494, 889, 1091
BstYI	RGATCY	1 cut(s)	1069
Bsu15I	ATCGAT	2 cut(s)	594, 613
BsuRI	GGCC	3 cut(s)	804, 872, 925
BsuTUI	ATCGAT	2 cut(s)	594, 613
BtsCI	GGATG	3 cut(s)	729, 775, 1129
BtsI	GCAGTG	2 cut(s)	505, 555
BtsIMutI	CAGTG	4 cut(s)	19, 505, 555, 796
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	1302
CaiI	CAGNNNCTG	1 cut(s)	1073
CciI	TCATGA	3 cut(s)	334, 561, 829
Cfr10I	RCCGGY	1 cut(s)	326
ClaI	ATCGAT	2 cut(s)	594, 613
Csp6I	GTAC	3 cut(s)	515, 1062, 1201
CviQI	GTAC	3 cut(s)	515, 1062, 1201
DdeI	CTNAG	3 cut(s)	134, 716, 1236
DpnI	GATC	6 cut(s)	593, 612, 616, 828, 1071, 1311
DpnII	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	1 cut(s)	988
EarI	CTCTTC	1 cut(s)	988
Ecl136II	GAGCTC	2 cut(s)	662, 1235
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	3 cut(s)	175, 664, 1237
Eco53kI	GAGCTC	2 cut(s)	662, 1235
Eco57I	CTGAAG	6 cut(s)	327, 336, 1190, 1199, 1262, 1280
Eco88I	CYCGRG	2 cut(s)	533, 1135
EcoICRI	GAGCTC	2 cut(s)	662, 1235
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	765, 1006, 1083
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	3 cut(s)	175, 664, 1237
ErhI	CCWWGG	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	536
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FauI	CCCGC	1 cut(s)	1088
Fnu4HI	GCNGC	4 cut(s)	308, 849, 909, 948
FokI	GGATG	3 cut(s)	736, 782, 1136
FriOI	GRGCYC	3 cut(s)	175, 664, 1237
Fsp4HI	GCNGC	4 cut(s)	308, 849, 909, 948
FspBI	CTAG	2 cut(s)	543, 824
GluI	GCNGC	4 cut(s)	308, 849, 909, 948
HaeIII	GGCC	3 cut(s)	804, 872, 925
HapII	CCGG	2 cut(s)	327, 1320
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HinfI	GANTC	6 cut(s)	338, 785, 839, 931, 1133, 1219
HpaII	CCGG	2 cut(s)	327, 1320
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188III	TCNNGA	9 cut(s)	110, 335, 437, 487, 533, 535, 562, 824, 830
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	4 cut(s)	116, 197, 263, 1013
HpyCH4III	ACNGT	3 cut(s)	14, 40, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	373, 668, 801, 947, 1073
HpyF3I	CTNAG	3 cut(s)	134, 716, 1236
Kzo9I	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
LmnI	GCTCC	1 cut(s)	667
Lsp1109I	GCAGC	4 cut(s)	319, 860, 895, 959
LweI	GCATC	3 cut(s)	72, 685, 1272
MaeI	CTAG	2 cut(s)	543, 824
MaeIII	GTNAC	3 cut(s)	239, 892, 1041
MalI	GATC	6 cut(s)	593, 612, 616, 828, 1071, 1311
MboI	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
MboII	GAAGA	9 cut(s)	182, 333, 611, 794, 848, 1005, 1112, 1157, 1268
MflI	RGATCY	1 cut(s)	1069
MhlI	GDGCHC	3 cut(s)	175, 664, 1237
MlsI	TGGCCA	1 cut(s)	925
MluCI	AATT	7 cut(s)	204, 258, 274, 315, 647, 1050, 1103
MluNI	TGGCCA	1 cut(s)	925
MlyI	GAGTC	1 cut(s)	1127
MmeI	TCCRAC	1 cut(s)	961
MnlI	CCTC	7 cut(s)	259, 447, 815, 831, 857, 989, 1131
Mox20I	TGGCCA	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	925
MseI	TTAA	3 cut(s)	236, 470, 623
MslI	CAYNNNNRTG	4 cut(s)	219, 327, 498, 768
Msp20I	TGGCCA	1 cut(s)	925
MspA1I	CMGCKG	2 cut(s)	908, 1300
MspI	CCGG	2 cut(s)	327, 1320
MspR9I	CCNGG	4 cut(s)	767, 1008, 1085, 1321
MvaI	CCWGG	3 cut(s)	767, 1008, 1085
MwoI	GCNNNNNNNGC	5 cut(s)	373, 668, 801, 947, 1073
NciI	CCSGG	1 cut(s)	1321
NdeII	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
NlaIV	GGNNCC	3 cut(s)	127, 1001, 1318
NmuCI	GTSAC	2 cut(s)	239, 892
NspI	RCATGY	2 cut(s)	307, 1213
PaeR7I	CTCGAG	2 cut(s)	533, 1135
PagI	TCATGA	3 cut(s)	334, 561, 829
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	5 cut(s)	338, 785, 839, 931, 1219
PfoI	TCCNGGA	1 cut(s)	1083
PkrI	GCNGC	4 cut(s)	309, 850, 910, 949
PleI	GAGTC	1 cut(s)	1127
PpsI	GAGTC	1 cut(s)	1127
PshBI	ATTAAT	1 cut(s)	623
Psp124BI	GAGCTC	2 cut(s)	664, 1237
Psp6I	CCWGG	3 cut(s)	765, 1006, 1083
PspGI	CCWGG	3 cut(s)	765, 1006, 1083
PspN4I	GGNNCC	3 cut(s)	127, 1001, 1318
PspXI	VCTCGAGB	1 cut(s)	1135
PstI	CTGCAG	1 cut(s)	1069
PstNI	CAGNNNCTG	1 cut(s)	1073
PsuI	RGATCY	1 cut(s)	1069
PvuII	CAGCTG	2 cut(s)	908, 1300
RsaI	GTAC	3 cut(s)	516, 1063, 1202
RsaNI	GTAC	3 cut(s)	515, 1062, 1201
RseI	CAYNNNNRTG	4 cut(s)	219, 327, 498, 768
SacI	GAGCTC	2 cut(s)	664, 1237
SaqAI	TTAA	3 cut(s)	236, 470, 623
SatI	GCNGC	4 cut(s)	308, 849, 909, 948
Sau3AI	GATC	6 cut(s)	591, 610, 614, 826, 1069, 1309
SchI	GAGTC	1 cut(s)	1127
ScrFI	CCNGG	4 cut(s)	767, 1008, 1085, 1321
SduI	GDGCHC	3 cut(s)	175, 664, 1237
SfaNI	GCATC	3 cut(s)	72, 685, 1272
SfcI	CTRYAG	1 cut(s)	1065
Sfr274I	CTCGAG	2 cut(s)	533, 1135
SlaI	CTCGAG	2 cut(s)	533, 1135
SmiMI	CAYNNNNRTG	4 cut(s)	219, 327, 498, 768
SmlI	CTYRAG	3 cut(s)	533, 655, 1135
SmoI	CTYRAG	3 cut(s)	533, 655, 1135
Sse9I	AATT	7 cut(s)	204, 258, 274, 315, 647, 1050, 1103
SsiI	CCGC	1 cut(s)	1095
SspMI	CTAG	2 cut(s)	543, 824
SstI	GAGCTC	2 cut(s)	664, 1237
StyD4I	CCNGG	4 cut(s)	765, 1006, 1083, 1319
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	3 cut(s)	14, 40, 530
TaqI	TCGA	5 cut(s)	217, 534, 594, 613, 1136
TasI	AATT	7 cut(s)	204, 258, 274, 315, 647, 1050, 1103
TatI	WGTACW	1 cut(s)	1061
TfiI	GAWTC	5 cut(s)	338, 785, 839, 931, 1219
Tru1I	TTAA	3 cut(s)	236, 470, 623
Tru9I	TTAA	3 cut(s)	236, 470, 623
TscAI	CASTG	4 cut(s)	19, 505, 555, 796
TseFI	GTSAC	2 cut(s)	239, 892
TseI	GCWGC	4 cut(s)	307, 848, 908, 947
Tsp45I	GTSAC	2 cut(s)	239, 892
TspDTI	ATGAA	6 cut(s)	167, 182, 323, 489, 612, 1266
TspGWI	ACGGA	4 cut(s)	532, 623, 736, 744
TspRI	CASTG	4 cut(s)	19, 505, 555, 796
VspI	ATTAAT	1 cut(s)	623
XapI	RAATTY	2 cut(s)	274, 1103
XbaI	TCTAGA	1 cut(s)	823
XceI	RCATGY	2 cut(s)	307, 1213
XhoI	CTCGAG	2 cut(s)	533, 1135
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	543, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.