Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002480

Physical Location & Seq

Genomic Coordinates Reverse (-)

55520030 .. 55531685

Gene Structure 11656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3366 bp

ATGGACTTGTCTTACAATGTGATTTTAGAACATACCATTGCTGAGAGGGAGCGCAGCCCTGCAGTTGTTGCAAGGTGTGTGGCACTTTTGAAACGCTACCTCCTAAGGTACAAACCCAGCGAAGAGACATTACTGCAGATTGATCGGTTTTGTATAAACACTATTGCCGAATGTGATATTGGTCCAAACCGGAAATTGTCTCCATTGTCACAATCATTTGCGTCAACAGCATCTACAAATACTCCCCCTTTGTCTGTACCTAGTTTTGCTTCTGGGACTCTTGTGAAGTCATTAAACTATGTGCGGTCTCTGGTGTCTCAACATCTTCCAAGGCGATCATTCCACCCGGGTGCTTTTTCTGGAGCCCTGTCTGCAACAAGACAATCCCTTCCGAGTTTGTCTTCTTTGTTGAGTAGATCCTTCAATGGGCAGCTAAGCCCTGCACACACTGGGGAACCTTTGGAGAATAAAGACGTCACAACTATGTCTATTTTGAACCTATCAAATATTGAAAAGGTTGATGGAATGAAAGATCTTGAATACCTCGCACTCGACGTTCTCAGGTGGCGCTGGCTTGGAGAACAGCAGTCATCATTATTGCTAACTGAAAGTGATCGCGTTGTAAATTCTCAAGAAATGAGAACATATAATCTCCTAGAAGTAGGTGCAGCAGCTCTACTTGTTGGAGACATGAAAGCTAAAATGAAAGGTCAACCTTGGAAGTTTTTTGGAACTGCTGATATGCCTTATCTTGATCAACTGTTGCAACCTTCACCAGTAACCGCAATTACCGATTCTTCTGCGGCACGTGCCCACTTGAGGGCAATAACAGCATCAAAACGCACTAAATCCGGCCCTAGTCAAATATGGGACGAATCTCCAGTGAGCACATTTCGTCCCCGGGCTAAACCGCTATTCCAATATCGTCACTACAGTGAACAACAACCCTTGCGCTTGAATCCAGCTGAGGTTTGTGAGGTCATTGCTGCAGTTTGCTCTGAGGCATCTTCACCAACTGCTAATGTGATGACAGTATCATCTAGATTAAATAATAACTATGGAAAGCCGTCGATGGATGCAGCAGTGAGCGTCTTAATCAAACTTGTTATTGACATGTATGTTTTGGATTCTGGGACTGCTGCTCCTCTCACTTTGTCTATGCTTCAGGAAATGCTTAATTCTCCAACAGCAACATGTAGAGTTCGTGCATTTGATTTCATTCTGAATCTTGGAGTTCATGCTCATTTACTAGAGCCAATGGTTACAGATGATGCTTCCACAATTGAAGAAGATTATTCTCAAGAATCATATTTTGACAGTGAAGCTAAGCTTGCAACACAAGAAATGAGAAGATCAGATTCTGTTTTGATGGGCAGCTCCTCAGCTATTGATAATTTTGAATCATGGATTTTAAATATTTTATATGAGATTTTGCTTCTTCTTGTTCAGATAGAAGAGAAAGAAGAATCTGTATGGGCTTCTGCTCTTAGCTGCTTGCTTTATTTTGTCTGTGATAGAGGCAAAATATTGAGAAACCGGATAAATGGACTTGACATAAGGGTTGTTAAGGCGCTACTAGTAATTAGCAGGAAGAATTCTTGGGCAGAAGTAGTTCATTGCAAGCTTATTAGCATGTTAGCAAACATGTTTTATCAAGTACCTGAAGAAACTGATGAGACTGTCTCAAGTACCTGTTTATTTGTTGTGGAGCAAGTTGATCTGATTGGTGGAATTGAGTTTATTTTTCTTGAGTATTCACTAGCAAAATCAAGGGATGAAAGAAGAAATCTGTTTTTGGTGCTTTTTGACTATGTTTTGCATCAAATTAATGAAGCATGCATAGCTACAGGAGGCACGGAGTATAGCGATGATGAGATTCAGCCTCTTGTTGCTCTTCTCACAATGGCTGATGCGTCTGAAGCCGTTTATATCTGTATTAAGCTTGGGGTGATAGGCATTGGGGAACTTATGAGGAATTCTATTTCTGATGCCTTGTCTAGATATCCAAACAGTGAACGGCTAAATATGCTGTTGGAGAGTGTACTGGAGAAATTTGGTGCAACCATTAGTTCATTTACTCATTTGGACACGGAGTTCTTACATATGATGCAGATAACAAAATCCTACAAGTCTTTGGATAGCATTGAAGGTGCAGTTTTAAGAAATGGTGTTGGCATGAAAGCAAAGCTCTCATGGGCCATTTTGCATTCCCTACTTCATTCTGGGAATATTGCTTACCATCGGAATGCGTATGTCTGGTTAGCTGACCTGCTTATTGCAGAAATTAGTGATGAAAGGAATTCAAGTATATGGTCAAATATTAAAAACATGCAGCAGAAAATTTCCCATGCTGTTGTTCATGATTCTGCAGTTGCTTCAGACATTCCTTCAGATGTTCCTCTGCCCATTTCTCTTATGTGTGGTCTTTTGAAGTCAAAGCACAGCATCATCAGATGGGGTTTTCTGTTTGTTCTTGAAAGGCTTCTCATGAGGTGTAAAATTTTGTTAAATGAAACTAAAACCCAGCAATCACATGACAGTGATGTTGGGAATATACACAAGGATAATCGTCTTGAGAAAGCTAATGCAGTGATAGACATCATGAGTAGTGCCTTATCCTTGGTTTTTCAGATTAATGAGACAGATCGCATGAATATTTTGAAGATGTGTGACATACTATTTTCTCAATTGTGCTTGAGAGTTCCTCCTGCAAGTGCAACAGAGGTAGGAGATGATGTGCAACGTGGTAGGGTTCTTTTTCGCATGGATGGTAATAAGAAGGTTGGTGATAAGGAGAGTTACCAGGATGCTTTTACCGAAGAAACTAGTGGCAGATCTGGCCAGGGTAACAACAATCCTGTAGAACATGAGACAGAATCGATGGCTGCACTGCTTCTTCGAGGACAAGCTATAGTTCCCATGCAATTGGTTACACGTGTTCCTGCTGCTTTGTTCTATTGGCCATTGATTCAACTTGCTGGTGCAGCTACAGATAACATAGCGTTGGGTATAGCCGTTGGAAGCAAGGGACGAGGGAACCTTCCCGGGGCCACATCTGACATACGGGCTACCCTTCTGTTACTTCTTATCGGTAAATGTACTGCGGATCCTACTGCTTTCCAGGAAGTTGGTGGGGAAGAATTTTTTAGGGAACTCTTAGATGATACAGACTCGAGGGTAGCATACTACTCCTCAGCCTTTCTTTTAAAGCGAATGATGACAGAGAAACCTGAAAAGTACCAACATATGCTTCAGAATCTCGTTGTTAGAGCTCAGCAGAGCAACAATGAAAAGCTGTTAGAAAATCCATACCTTCAGATGCGTGGCATACTTCAGCTGGCAAACGATCTAGGAACTGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1121

Amino Acids

124.64

Weight (kDa)

5.63

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12590 AT3G12590
fragaria_vesca	FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g22001 FvH4_7g22001
malus_domestica	MD01G1124000.v1.1 MD07G1194200.v1.1
prunus_persica	Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1
pyrus_communis	pycom01g15050 pycom07g18300
rosa_chinensis	RchiOBHm_Chr1g0366301
rosa_laevigata	RLG00000027354
rosa_multiflora	Rmu_co8229963.1_g000001 Rmu_co8389475.1_g000001 Rmu_ssc0000250.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290010 Rroxscaffold_4G00290260
rosa_rugosa	Rorug01G0328600 Rorug01G0328600 Rorug01G0328700.1
rosa_samantha	Rh1AG336900 Rh1BG298500 Rh1CG313800 Rh1DG329900
rosa_wichuraiana	Rw1G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	2277
AccII	CGCG	1 cut(s)	618
AciI	CCGC	5 cut(s)	304, 783, 803, 911, 3104
AclWI	GGATC	3 cut(s)	411, 3101, 3114
AcoI	YGGCCR	2 cut(s)	2839, 2960
AcsI	RAATTY	8 cut(s)	625, 1594, 1975, 2051, 2299, 2340, 2499, 3140
AcuI	CTGAAG	8 cut(s)	1148, 1683, 1938, 2361, 2373, 3236, 3299, 3317
AcvI	CACGTG	2 cut(s)	809, 2936
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	7 cut(s)	110, 258, 1659, 1690, 2043, 3100, 3239
AfiI	CCNNNNNNNGG	4 cut(s)	426, 819, 820, 3046
AflIII	ACRYGT	5 cut(s)	1113, 1193, 1644, 2933, 2935
AhlI	ACTAGT	2 cut(s)	1576, 2825
AjnI	CCWGG	3 cut(s)	2802, 2841, 3120
AjuI	GAANNNNNNNTTGG	4 cut(s)	162, 194, 3234, 3266
AleI	CACNNNNGTG	2 cut(s)	348, 933
AloI	GAACNNNNNNTCC	2 cut(s)	2078, 2110
Alw21I	GWGCWC	2 cut(s)	890, 3274
Alw26I	GTCTC	9 cut(s)	119, 204, 312, 321, 681, 1670, 1687, 2633, 2864
AlwI	GGATC	3 cut(s)	411, 3101, 3114
AlwNI	CAGNNNCTG	1 cut(s)	1361
Ama87I	CYCGRG	4 cut(s)	346, 900, 3044, 3172
AoxI	GGCC	5 cut(s)	853, 2196, 2839, 2960, 3048
ApoI	RAATTY	8 cut(s)	625, 1594, 1975, 2051, 2299, 2340, 2499, 3140
AseI	ATTAAT	2 cut(s)	1827, 2634
Asp700I	GAANNNNTTC	2 cut(s)	1611, 2481
AspLEI	GCGC	4 cut(s)	54, 570, 954, 1573
AspS9I	GGNCC	4 cut(s)	182, 854, 2196, 3048
AsuC2I	CCSGG	6 cut(s)	347, 348, 901, 902, 3045, 3046
AsuHPI	GGTGA	4 cut(s)	765, 1002, 1960, 2798
AvaI	CYCGRG	4 cut(s)	346, 900, 3044, 3172
AvaII	GGWCC	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	814
BalI	TGGCCA	2 cut(s)	2841, 2962
BamHI	GGATCC	1 cut(s)	3106
BanII	GRGCYC	2 cut(s)	367, 3274
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbrPI	CACGTG	2 cut(s)	809, 2936
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	890, 3274
BbvCI	CCTCAGC	3 cut(s)	966, 1381, 3193
BccI	CCATC	7 cut(s)	515, 1066, 1363, 2247, 2448, 2762, 2875
BceAI	ACGGC	4 cut(s)	1051, 1907, 2033, 2999
BcgI	CGANNNNNNTGC	4 cut(s)	125, 159, 782, 816
BciT130I	CCWGG	3 cut(s)	2804, 2843, 3122
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	6 cut(s)	347, 348, 901, 902, 3045, 3046
BcoDI	GTCTC	9 cut(s)	119, 204, 312, 321, 681, 1670, 1687, 2633, 2864
BcuI	ACTAGT	2 cut(s)	1576, 2825
BfmI	CTRYAG	9 cut(s)	60, 134, 931, 987, 1845, 2367, 2859, 2910, 2988
BfoI	RGCGCY	2 cut(s)	571, 1574
BfuAI	ACCTGC	1 cut(s)	2277
BglII	AGATCT	2 cut(s)	532, 2834
BlpI	GCTNAGC	3 cut(s)	434, 1326, 3273
Bme1390I	CCNGG	9 cut(s)	347, 348, 901, 902, 2804, 2843, 3045, 3046, 3122
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	4 cut(s)	346, 900, 3044, 3172
BmgT120I	GGNCC	4 cut(s)	182, 854, 2196, 3048
BmiI	GGNNCC	5 cut(s)	364, 456, 3038, 3049, 3108
BmrFI	CCNGG	9 cut(s)	347, 348, 901, 902, 2804, 2843, 3045, 3046, 3122
BmrI	ACTGGG	2 cut(s)	459, 3366
BmuI	ACTGGG	2 cut(s)	459, 3366
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	4 cut(s)	1667, 1699, 2689, 2721
BpmI	CTGGAG	3 cut(s)	381, 864, 2066
Bpu10I	CCTNAGC	3 cut(s)	966, 1381, 3193
Bpu1102I	GCTNAGC	3 cut(s)	434, 1326, 3273
BpuEI	CTTGAG	7 cut(s)	615, 838, 1284, 1669, 1769, 2594, 2716
BpuMI	CCSGG	6 cut(s)	347, 348, 901, 902, 3045, 3046
Bsa29I	ATCGAT	1 cut(s)	2879
BsaAI	YACGTR	2 cut(s)	809, 2936
BsaBI	GATNNNNATC	1 cut(s)	2597
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	9 cut(s)	329, 346, 716, 899, 900, 2619, 2842, 3044, 3045
BsaWI	WCCGGW	2 cut(s)	189, 1536
BsaXI	ACNNNNNCTCC	8 cut(s)	84, 114, 226, 256, 1126, 1156, 2721, 2751
Bsc4I	CCNNNNNNNGG	4 cut(s)	426, 819, 820, 3046
Bse1I	ACTGG	5 cut(s)	454, 776, 881, 2049, 3361
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	3 cut(s)	36, 981, 1615
Bse8I	GATNNNNATC	1 cut(s)	2597
BseBI	CCWGG	3 cut(s)	2804, 2843, 3122
BseCI	ATCGAT	1 cut(s)	2879
BseDI	CCNNGG	9 cut(s)	329, 346, 716, 899, 900, 2619, 2842, 3044, 3045
BseGI	GGATG	4 cut(s)	1081, 1780, 2773, 2812
BseJI	GATNNNNATC	1 cut(s)	2597
BseLI	CCNNNNNNNGG	4 cut(s)	426, 819, 820, 3046
BseMI	GCAATG	3 cut(s)	36, 981, 1615
BseMII	CTCAG	7 cut(s)	33, 574, 957, 990, 1395, 3207, 3287
BseNI	ACTGG	5 cut(s)	454, 776, 881, 2049, 3361
BseRI	GAGGAG	3 cut(s)	1134, 1369, 3181
BseSI	GKGCMC	1 cut(s)	814
BseYI	CCCAGC	2 cut(s)	116, 2523
BsgI	GTGCAG	5 cut(s)	426, 687, 2172, 2871, 3003
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	5 cut(s)	855, 2198, 2841, 2962, 3050
BshVI	ATCGAT	1 cut(s)	2879
BsiHKAI	GWGCWC	2 cut(s)	890, 3274
BsiHKCI	CYCGRG	4 cut(s)	346, 900, 3044, 3172
BsiSI	CCGG	6 cut(s)	190, 347, 852, 901, 1537, 3045
BslFI	GGGAC	5 cut(s)	289, 882, 884, 1147, 3042
BslI	CCNNNNNNNGG	4 cut(s)	426, 819, 820, 3046
BsmAI	GTCTC	9 cut(s)	119, 204, 312, 321, 681, 1670, 1687, 2633, 2864
BsmFI	GGGAC	5 cut(s)	289, 882, 884, 1147, 3042
BsmI	GAATGC	2 cut(s)	2206, 2251
BsnI	GGCC	5 cut(s)	855, 2198, 2841, 2962, 3050
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	4 cut(s)	346, 900, 3044, 3172
Bsp1286I	GDGCHC	4 cut(s)	367, 814, 890, 3274
Bsp1720I	GCTNAGC	3 cut(s)	434, 1326, 3273
BspACI	CCGC	5 cut(s)	304, 783, 803, 911, 3104
BspANI	GGCC	5 cut(s)	855, 2198, 2841, 2962, 3050
BspCNI	CTCAG	7 cut(s)	34, 573, 958, 991, 1394, 3206, 3286
BspDI	ATCGAT	1 cut(s)	2879
BspFNI	CGCG	1 cut(s)	618
BspHI	TCATGA	3 cut(s)	2359, 2487, 2601
BspLI	GGNNCC	5 cut(s)	364, 456, 3038, 3049, 3108
BspMAI	CTGCAG	4 cut(s)	64, 138, 991, 2371
BspMI	ACCTGC	1 cut(s)	2277
BspPI	GGATC	3 cut(s)	411, 3101, 3114
BspQI	GCTCTTC	1 cut(s)	1899
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	3 cut(s)	36, 981, 1615
BsrI	ACTGG	5 cut(s)	454, 776, 881, 2049, 3361
BssECI	CCNNGG	9 cut(s)	329, 346, 716, 899, 900, 2619, 2842, 3044, 3045
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	3 cut(s)	329, 716, 2619
Bst2UI	CCWGG	3 cut(s)	2804, 2843, 3122
Bst4CI	ACNGT	7 cut(s)	762, 935, 1033, 1319, 1681, 2012, 2540
Bst6I	CTCTTC	3 cut(s)	117, 1449, 1899
BstACI	GRCGYC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBAI	YACGTR	2 cut(s)	809, 2936
BstC8I	GCNNGC	6 cut(s)	572, 1332, 1496, 1622, 1837, 3339
BstF5I	GGATG	4 cut(s)	1081, 1780, 2773, 2812
BstFNI	CGCG	1 cut(s)	618
BstH2I	RGCGCY	2 cut(s)	571, 1574
BstHHI	GCGC	4 cut(s)	54, 570, 954, 1573
BstMAI	GTCTC	9 cut(s)	119, 204, 312, 321, 681, 1670, 1687, 2633, 2864
BstNI	CCWGG	3 cut(s)	2804, 2843, 3122
BstNSI	RCATGY	6 cut(s)	1117, 1197, 1636, 1648, 1839, 2332
BstSCI	CCNGG	9 cut(s)	345, 346, 899, 900, 2802, 2841, 3043, 3044, 3120
BstSFI	CTRYAG	9 cut(s)	60, 134, 931, 987, 1845, 2367, 2859, 2910, 2988
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	1 cut(s)	618
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	4 cut(s)	416, 532, 2834, 3106
BstXI	CCANNNNNNTGG	2 cut(s)	2926, 3128
BstYI	RGATCY	4 cut(s)	416, 532, 2834, 3106
Bsu15I	ATCGAT	1 cut(s)	2879
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	5 cut(s)	855, 2198, 2841, 2962, 3050
BsuTUI	ATCGAT	1 cut(s)	2879
BtgZI	GCGATG	1 cut(s)	1881
BtsCI	GGATG	4 cut(s)	1081, 1780, 2773, 2812
BtsI	GCAGTG	3 cut(s)	1089, 2595, 2888
BtsIMutI	CAGTG	9 cut(s)	447, 888, 940, 1089, 1324, 2017, 2545, 2595, 2888
BveI	ACCTGC	1 cut(s)	2277
Cac8I	GCNNGC	6 cut(s)	572, 1332, 1496, 1622, 1837, 3339
CaiI	CAGNNNCTG	1 cut(s)	1361
CciI	TCATGA	3 cut(s)	2359, 2487, 2601
CfoI	GCGC	4 cut(s)	54, 570, 954, 1573
Cfr13I	GGNCC	4 cut(s)	182, 854, 2196, 3048
Cfr9I	CCCGGG	3 cut(s)	346, 900, 3044
ClaI	ATCGAT	1 cut(s)	2879
CseI	GACGC	3 cut(s)	210, 1078, 1902
Csp6I	GTAC	7 cut(s)	109, 257, 1658, 1689, 2042, 3099, 3238
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviQI	GTAC	7 cut(s)	109, 257, 1658, 1689, 2042, 3099, 3238
DraI	TTTAAA	2 cut(s)	1413, 3207
EaeI	YGGCCR	2 cut(s)	2839, 2960
Eam1104I	CTCTTC	3 cut(s)	117, 1449, 1899
EarI	CTCTTC	3 cut(s)	117, 1449, 1899
Ecl136II	GAGCTC	1 cut(s)	3272
Eco130I	CCWWGG	3 cut(s)	329, 716, 2619
Eco24I	GRGCYC	2 cut(s)	367, 3274
Eco31I	GGTCTC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	2003
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	3272
Eco57I	CTGAAG	8 cut(s)	1148, 1683, 1938, 2361, 2373, 3236, 3299, 3317
Eco72I	CACGTG	2 cut(s)	809, 2936
Eco81I	CCTNAGG	1 cut(s)	104
Eco88I	CYCGRG	4 cut(s)	346, 900, 3044, 3172
EcoICRI	GAGCTC	1 cut(s)	3272
EcoRI	GAATTC	3 cut(s)	1594, 1975, 2299
EcoRII	CCWGG	3 cut(s)	2802, 2841, 3120
EcoRV	GATATC	1 cut(s)	2003
EcoT14I	CCWWGG	3 cut(s)	329, 716, 2619
EcoT22I	ATGCAT	1 cut(s)	1841
EcoT38I	GRGCYC	2 cut(s)	367, 3274
ErhI	CCWWGG	3 cut(s)	329, 716, 2619
FalI	AAGNNNNNCTT	2 cut(s)	1314, 1346
FaqI	GGGAC	5 cut(s)	289, 882, 884, 1147, 3042
FauNDI	CATATG	2 cut(s)	2103, 3246
FbaI	TGATCA	1 cut(s)	754
FokI	GGATG	4 cut(s)	1088, 1787, 2780, 2819
FriOI	GRGCYC	2 cut(s)	367, 3274
GlaI	GCGC	4 cut(s)	53, 569, 953, 1572
GsaI	CCCAGC	2 cut(s)	120, 2527
GsuI	CTGGAG	3 cut(s)	381, 864, 2066
HaeII	RGCGCY	2 cut(s)	571, 1574
HaeIII	GGCC	5 cut(s)	855, 2198, 2841, 2962, 3050
HapII	CCGG	6 cut(s)	190, 347, 852, 901, 1537, 3045
HgaI	GACGC	3 cut(s)	210, 1078, 1902
HhaI	GCGC	4 cut(s)	54, 570, 954, 1573
Hin1I	GRCGYC	1 cut(s)	474
Hin6I	GCGC	4 cut(s)	52, 568, 952, 1571
HinP1I	GCGC	4 cut(s)	52, 568, 952, 1571
HincII	GTYRAC	2 cut(s)	225, 713
HindII	GTYRAC	2 cut(s)	225, 713
HindIII	AAGCTT	3 cut(s)	1328, 1622, 1940
HpaII	CCGG	6 cut(s)	190, 347, 852, 901, 1537, 3045
HphI	GGTGA	4 cut(s)	765, 1002, 1960, 2798
Hpy166II	GTNNAC	5 cut(s)	225, 713, 938, 2015, 2042
Hpy8I	GTNNAC	5 cut(s)	225, 713, 938, 2015, 2042
Hpy99I	CGWCG	2 cut(s)	557, 1072
HpyAV	CCTTC	9 cut(s)	398, 430, 780, 2141, 2397, 2773, 3050, 3083, 3323
HpyCH4III	ACNGT	7 cut(s)	762, 935, 1033, 1319, 1681, 2012, 2540
HpyCH4IV	ACGT	5 cut(s)	474, 555, 808, 2743, 2935
HpySE526I	ACGT	5 cut(s)	474, 555, 808, 2743, 2935
Hsp92I	GRCGYC	1 cut(s)	474
HspAI	GCGC	4 cut(s)	52, 568, 952, 1571
Ksp22I	TGATCA	1 cut(s)	754
LguI	GCTCTTC	1 cut(s)	1899
LmnI	GCTCC	5 cut(s)	49, 362, 1147, 1382, 1708
MaeII	ACGT	5 cut(s)	474, 555, 808, 2743, 2935
MfeI	CAATTG	3 cut(s)	1281, 2687, 2924
MflI	RGATCY	4 cut(s)	416, 532, 2834, 3106
MhlI	GDGCHC	4 cut(s)	367, 814, 890, 3274
MlsI	TGGCCA	2 cut(s)	2841, 2962
MluNI	TGGCCA	2 cut(s)	2841, 2962
MlyI	GAGTC	2 cut(s)	271, 3164
MmeI	TCCRAC	4 cut(s)	664, 1208, 2013, 2998
Mox20I	TGGCCA	2 cut(s)	2841, 2962
Mph1103I	ATGCAT	1 cut(s)	1841
MroXI	GAANNNNTTC	2 cut(s)	1611, 2481
MscI	TGGCCA	2 cut(s)	2841, 2962
MslI	CAYNNNNRTG	5 cut(s)	348, 482, 933, 2244, 2538
Msp20I	TGGCCA	2 cut(s)	2841, 2962
MspA1I	CMGCKG	2 cut(s)	965, 3337
MspI	CCGG	6 cut(s)	190, 347, 852, 901, 1537, 3045
MspR9I	CCNGG	9 cut(s)	347, 348, 901, 902, 2804, 2843, 3045, 3046, 3122
MunI	CAATTG	3 cut(s)	1281, 2687, 2924
Mva1269I	GAATGC	2 cut(s)	2206, 2251
MvaI	CCWGG	3 cut(s)	2804, 2843, 3122
MvnI	CGCG	1 cut(s)	618
NciI	CCSGG	6 cut(s)	347, 348, 901, 902, 3045, 3046
NdeI	CATATG	2 cut(s)	2103, 3246
NlaIV	GGNNCC	5 cut(s)	364, 456, 3038, 3049, 3108
NmuCI	GTSAC	4 cut(s)	207, 475, 926, 2669
NsiI	ATGCAT	1 cut(s)	1841
NspI	RCATGY	6 cut(s)	1117, 1197, 1636, 1648, 1839, 2332
OliI	CACNNNNGTG	2 cut(s)	348, 933
PaeI	GCATGC	1 cut(s)	1839
PaeR7I	CTCGAG	1 cut(s)	3172
PagI	TCATGA	3 cut(s)	2359, 2487, 2601
PciI	ACATGT	3 cut(s)	1113, 1193, 1644
PciSI	GCTCTTC	1 cut(s)	1899
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PctI	GAATGC	2 cut(s)	2206, 2251
PdmI	GAANNNNTTC	2 cut(s)	1611, 2481
PfoI	TCCNGGA	1 cut(s)	3120
PleI	GAGTC	2 cut(s)	271, 3164
PmaCI	CACGTG	2 cut(s)	809, 2936
PmlI	CACGTG	2 cut(s)	809, 2936
PpsI	GAGTC	2 cut(s)	271, 3164
Ppu21I	YACGTR	2 cut(s)	809, 2936
PscI	ACATGT	3 cut(s)	1113, 1193, 1644
PshBI	ATTAAT	2 cut(s)	1827, 2634
Psp124BI	GAGCTC	1 cut(s)	3274
Psp6I	CCWGG	3 cut(s)	2802, 2841, 3120
PspCI	CACGTG	2 cut(s)	809, 2936
PspFI	CCCAGC	2 cut(s)	116, 2523
PspGI	CCWGG	3 cut(s)	2802, 2841, 3120
PspN4I	GGNNCC	5 cut(s)	364, 456, 3038, 3049, 3108
PspPI	GGNCC	4 cut(s)	182, 854, 2196, 3048
PspXI	VCTCGAGB	1 cut(s)	3172
PstI	CTGCAG	4 cut(s)	64, 138, 991, 2371
PstNI	CAGNNNCTG	1 cut(s)	1361
PsuI	RGATCY	4 cut(s)	416, 532, 2834, 3106
PvuII	CAGCTG	2 cut(s)	965, 3337
RsaI	GTAC	7 cut(s)	110, 258, 1659, 1690, 2043, 3100, 3239
RsaNI	GTAC	7 cut(s)	109, 257, 1658, 1689, 2042, 3099, 3238
RseI	CAYNNNNRTG	5 cut(s)	348, 482, 933, 2244, 2538
SacI	GAGCTC	1 cut(s)	3274
SapI	GCTCTTC	1 cut(s)	1899
Sau96I	GGNCC	4 cut(s)	182, 854, 2196, 3048
SchI	GAGTC	2 cut(s)	271, 3164
ScrFI	CCNGG	9 cut(s)	347, 348, 901, 902, 2804, 2843, 3045, 3046, 3122
SduI	GDGCHC	4 cut(s)	367, 814, 890, 3274
SfcI	CTRYAG	9 cut(s)	60, 134, 931, 987, 1845, 2367, 2859, 2910, 2988
Sfr274I	CTCGAG	1 cut(s)	3172
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	3172
SmaI	CCCGGG	3 cut(s)	348, 902, 3046
SmiMI	CAYNNNNRTG	5 cut(s)	348, 482, 933, 2244, 2538
SmlI	CTYRAG	8 cut(s)	630, 817, 1299, 1684, 1748, 2573, 2695, 3172
SmoI	CTYRAG	8 cut(s)	630, 817, 1299, 1684, 1748, 2573, 2695, 3172
SpeI	ACTAGT	2 cut(s)	1576, 2825
SphI	GCATGC	1 cut(s)	1839
SsiI	CCGC	5 cut(s)	304, 783, 803, 911, 3104
SspI	AATATT	6 cut(s)	508, 1417, 1527, 2230, 2320, 2656
SstI	GAGCTC	1 cut(s)	3274
StyD4I	CCNGG	9 cut(s)	345, 346, 899, 900, 2802, 2841, 3043, 3044, 3120
StyI	CCWWGG	3 cut(s)	329, 716, 2619
TaaI	ACNGT	7 cut(s)	762, 935, 1033, 1319, 1681, 2012, 2540
TaiI	ACGT	5 cut(s)	477, 558, 811, 2746, 2938
TaqI	TCGA	5 cut(s)	552, 1070, 2879, 2899, 3173
TatI	WGTACW	2 cut(s)	2041, 3098
TauI	GCSGC	1 cut(s)	806
TscAI	CASTG	9 cut(s)	454, 888, 940, 1089, 1324, 2017, 2545, 2595, 2895
TseFI	GTSAC	4 cut(s)	207, 475, 926, 2669
Tsp45I	GTSAC	4 cut(s)	207, 475, 926, 2669
TspGWI	ACGGA	2 cut(s)	1871, 2105
TspMI	CCCGGG	3 cut(s)	346, 900, 3044
TspRI	CASTG	9 cut(s)	454, 888, 940, 1089, 1324, 2017, 2545, 2595, 2895
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	2 cut(s)	1827, 2634
XapI	RAATTY	8 cut(s)	625, 1594, 1975, 2051, 2299, 2340, 2499, 3140
XbaI	TCTAGA	2 cut(s)	1040, 1997
XceI	RCATGY	6 cut(s)	1117, 1197, 1636, 1648, 1839, 2332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3128
XhoI	CTCGAG	1 cut(s)	3172
XmaI	CCCGGG	3 cut(s)	346, 900, 3044
XmnI	GAANNNNTTC	2 cut(s)	1611, 2481
ZraI	GACGTC	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	1841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.