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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12590 AT3G12590 |
| fragaria_vesca | FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g22001 FvH4_7g22001 |
| malus_domestica | MD01G1124000.v1.1 MD07G1194200.v1.1 |
| prunus_persica | Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 |
| pyrus_communis | pycom01g15050 pycom07g18300 |
| rosa_chinensis | RchiOBHm_Chr1g0366301 |
| rosa_laevigata | RLG00000027354 |
| rosa_multiflora | Rmu_co8229963.1_g000001 Rmu_co8389475.1_g000001 Rmu_ssc0000250.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290010 Rroxscaffold_4G00290260 |
| rosa_rugosa | Rorug01G0328600 Rorug01G0328600 Rorug01G0328700.1 |
| rosa_samantha | Rh1AG336900 Rh1BG298500 Rh1CG313800 Rh1DG329900 |
| rosa_wichuraiana | Rw1G029870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 729 |
| Acc36I | ACCTGC | 1 cut(s) | 2529 |
| AccI | GTMKAC | 1 cut(s) | 12 |
| AccII | CGCG | 1 cut(s) | 870 |
| AclWI | GGATC | 3 cut(s) | 663, 3353, 3366 |
| AcoI | YGGCCR | 4 cut(s) | 54, 162, 3091, 3212 |
| AcsI | RAATTY | 8 cut(s) | 219, 1846, 2227, 2303, 2551, 2592, 2751, 3392 |
| AcuI | CTGAAG | 9 cut(s) | 32, 1400, 1935, 2190, 2613, 2625, 3488, 3551, 3569 |
| AcvI | CACGTG | 2 cut(s) | 1061, 3188 |
| AcyI | GRCGYC | 2 cut(s) | 152, 726 |
| AdeI | CACNNNGTG | 1 cut(s) | 701 |
| AfaI | GTAC | 7 cut(s) | 362, 510, 1911, 1942, 2295, 3352, 3491 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 678, 1071, 1072, 3298 |
| AflIII | ACRYGT | 5 cut(s) | 1365, 1445, 1896, 3185, 3187 |
| AhlI | ACTAGT | 2 cut(s) | 1828, 3077 |
| AjnI | CCWGG | 3 cut(s) | 3054, 3093, 3372 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 414, 446, 3486, 3518 |
| AleI | CACNNNNGTG | 2 cut(s) | 600, 1185 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2330, 2362 |
| Alw21I | GWGCWC | 2 cut(s) | 1142, 3526 |
| Alw26I | GTCTC | 9 cut(s) | 371, 456, 564, 573, 933, 1922, 1939, 2885, 3116 |
| AlwI | GGATC | 3 cut(s) | 663, 3353, 3366 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1613 |
| Ama87I | CYCGRG | 5 cut(s) | 32, 598, 1152, 3296, 3424 |
| AoxI | GGCC | 7 cut(s) | 54, 162, 1105, 2448, 3091, 3212, 3300 |
| ApoI | RAATTY | 8 cut(s) | 219, 1846, 2227, 2303, 2551, 2592, 2751, 3392 |
| AseI | ATTAAT | 2 cut(s) | 2079, 2886 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1863, 2733 |
| AspLEI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| AspS9I | GGNCC | 4 cut(s) | 434, 1106, 2448, 3300 |
| AsuC2I | CCSGG | 9 cut(s) | 21, 33, 34, 599, 600, 1153, 1154, 3297, 3298 |
| AsuHPI | GGTGA | 4 cut(s) | 1017, 1254, 2212, 2804 |
| AvaI | CYCGRG | 5 cut(s) | 32, 598, 1152, 3296, 3424 |
| AvaII | GGWCC | 1 cut(s) | 434 |
| AxyI | CCTNAGG | 1 cut(s) | 356 |
| BaeGI | GKGCMC | 1 cut(s) | 1066 |
| BalI | TGGCCA | 2 cut(s) | 3093, 3214 |
| BamHI | GGATCC | 1 cut(s) | 3358 |
| BanII | GRGCYC | 3 cut(s) | 32, 619, 3526 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 366, 398 |
| BbrPI | CACGTG | 2 cut(s) | 1061, 3188 |
| BbsI | GAAGAC | 1 cut(s) | 645 |
| Bbv12I | GWGCWC | 2 cut(s) | 1142, 3526 |
| BbvCI | CCTCAGC | 2 cut(s) | 1633, 3445 |
| BccI | CCATC | 9 cut(s) | 247, 767, 1318, 1615, 2499, 2700, 2783, 3014, 3127 |
| BceAI | ACGGC | 4 cut(s) | 1303, 2159, 2285, 3251 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 377, 411, 1034, 1068 |
| BciT130I | CCWGG | 3 cut(s) | 3056, 3095, 3374 |
| BclI | TGATCA | 1 cut(s) | 1006 |
| BcnI | CCSGG | 9 cut(s) | 21, 33, 34, 599, 600, 1153, 1154, 3297, 3298 |
| BcoDI | GTCTC | 9 cut(s) | 371, 456, 564, 573, 933, 1922, 1939, 2885, 3116 |
| BcuI | ACTAGT | 2 cut(s) | 1828, 3077 |
| BfoI | RGCGCY | 2 cut(s) | 823, 1826 |
| BfuAI | ACCTGC | 1 cut(s) | 2529 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BglII | AGATCT | 3 cut(s) | 92, 784, 3086 |
| BlpI | GCTNAGC | 3 cut(s) | 686, 1578, 3525 |
| Bme18I | GGWCC | 1 cut(s) | 434 |
| BmeT110I | CYCGRG | 5 cut(s) | 32, 598, 1152, 3296, 3424 |
| BmgT120I | GGNCC | 4 cut(s) | 434, 1106, 2448, 3300 |
| BmiI | GGNNCC | 7 cut(s) | 29, 120, 616, 708, 3290, 3301, 3360 |
| BmrI | ACTGGG | 1 cut(s) | 3618 |
| BmuI | ACTGGG | 1 cut(s) | 3618 |
| BpiI | GAAGAC | 1 cut(s) | 645 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1919, 1951, 2941, 2973 |
| BpmI | CTGGAG | 3 cut(s) | 633, 1116, 2318 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1633, 3445 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 686, 1578, 3525 |
| BpuEI | CTTGAG | 7 cut(s) | 867, 1090, 1536, 1921, 2021, 2846, 2968 |
| BpuMI | CCSGG | 9 cut(s) | 21, 33, 34, 599, 600, 1153, 1154, 3297, 3298 |
| Bsa29I | ATCGAT | 1 cut(s) | 3131 |
| BsaAI | YACGTR | 2 cut(s) | 1061, 3188 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2849 |
| BsaHI | GRCGYC | 2 cut(s) | 152, 726 |
| BsaI | GGTCTC | 1 cut(s) | 564 |
| BsaWI | WCCGGW | 2 cut(s) | 441, 1788 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 678, 1071, 1072, 3298 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| Bse1I | ACTGG | 4 cut(s) | 1028, 1133, 2301, 3613 |
| Bse21I | CCTNAGG | 1 cut(s) | 356 |
| Bse3DI | GCAATG | 3 cut(s) | 288, 1233, 1867 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2849 |
| BseBI | CCWGG | 3 cut(s) | 3056, 3095, 3374 |
| BseCI | ATCGAT | 1 cut(s) | 3131 |
| BseGI | GGATG | 5 cut(s) | 239, 1333, 2032, 3025, 3064 |
| BseJI | GATNNNNATC | 1 cut(s) | 2849 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 678, 1071, 1072, 3298 |
| BseMI | GCAATG | 3 cut(s) | 288, 1233, 1867 |
| BseMII | CTCAG | 8 cut(s) | 80, 215, 285, 826, 1242, 1647, 3459, 3539 |
| BseNI | ACTGG | 4 cut(s) | 1028, 1133, 2301, 3613 |
| BseRI | GAGGAG | 6 cut(s) | 78, 81, 90, 1386, 1621, 3433 |
| BseSI | GKGCMC | 1 cut(s) | 1066 |
| BseYI | CCCAGC | 2 cut(s) | 368, 2775 |
| BsgI | GTGCAG | 5 cut(s) | 678, 939, 2424, 3123, 3255 |
| Bsh1236I | CGCG | 1 cut(s) | 870 |
| BshFI | GGCC | 7 cut(s) | 56, 164, 1107, 2450, 3093, 3214, 3302 |
| BshVI | ATCGAT | 1 cut(s) | 3131 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1142, 3526 |
| BsiHKCI | CYCGRG | 5 cut(s) | 32, 598, 1152, 3296, 3424 |
| BslFI | GGGAC | 5 cut(s) | 541, 1134, 1136, 1399, 3294 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 678, 1071, 1072, 3298 |
| BsmAI | GTCTC | 9 cut(s) | 371, 456, 564, 573, 933, 1922, 1939, 2885, 3116 |
| BsmFI | GGGAC | 5 cut(s) | 541, 1134, 1136, 1399, 3294 |
| BsmI | GAATGC | 2 cut(s) | 2458, 2503 |
| BsnI | GGCC | 7 cut(s) | 56, 164, 1107, 2450, 3093, 3214, 3302 |
| Bso31I | GGTCTC | 1 cut(s) | 564 |
| BsoBI | CYCGRG | 5 cut(s) | 32, 598, 1152, 3296, 3424 |
| Bsp1286I | GDGCHC | 5 cut(s) | 32, 619, 1066, 1142, 3526 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 686, 1578, 3525 |
| BspANI | GGCC | 7 cut(s) | 56, 164, 1107, 2450, 3093, 3214, 3302 |
| BspCNI | CTCAG | 8 cut(s) | 81, 216, 286, 825, 1243, 1646, 3458, 3538 |
| BspDI | ATCGAT | 1 cut(s) | 3131 |
| BspFNI | CGCG | 1 cut(s) | 870 |
| BspHI | TCATGA | 3 cut(s) | 2611, 2739, 2853 |
| BspLI | GGNNCC | 7 cut(s) | 29, 120, 616, 708, 3290, 3301, 3360 |
| BspMAI | CTGCAG | 4 cut(s) | 316, 390, 1243, 2623 |
| BspMI | ACCTGC | 1 cut(s) | 2529 |
| BspPI | GGATC | 3 cut(s) | 663, 3353, 3366 |
| BspQI | GCTCTTC | 1 cut(s) | 2151 |
| BspTNI | GGTCTC | 1 cut(s) | 564 |
| BsrDI | GCAATG | 3 cut(s) | 288, 1233, 1867 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BsrI | ACTGG | 4 cut(s) | 1028, 1133, 2301, 3613 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssNI | GRCGYC | 2 cut(s) | 152, 726 |
| BssT1I | CCWWGG | 4 cut(s) | 581, 968, 1480, 2871 |
| Bst2UI | CCWGG | 3 cut(s) | 3056, 3095, 3374 |
| Bst4CI | ACNGT | 8 cut(s) | 17, 701, 1014, 1187, 1285, 1571, 1933, 2264 |
| Bst6I | CTCTTC | 3 cut(s) | 369, 1701, 2151 |
| BstACI | GRCGYC | 2 cut(s) | 152, 726 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 320 |
| BstBAI | YACGTR | 2 cut(s) | 1061, 3188 |
| BstF5I | GGATG | 5 cut(s) | 239, 1333, 2032, 3025, 3064 |
| BstFNI | CGCG | 1 cut(s) | 870 |
| BstH2I | RGCGCY | 2 cut(s) | 823, 1826 |
| BstHHI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| BstMAI | GTCTC | 9 cut(s) | 371, 456, 564, 573, 933, 1922, 1939, 2885, 3116 |
| BstNI | CCWGG | 3 cut(s) | 3056, 3095, 3374 |
| BstNSI | RCATGY | 6 cut(s) | 1369, 1449, 1888, 1900, 2091, 2584 |
| BstSLI | GKGCMC | 1 cut(s) | 1066 |
| BstUI | CGCG | 1 cut(s) | 870 |
| BstV2I | GAAGAC | 1 cut(s) | 645 |
| BstX2I | RGATCY | 5 cut(s) | 92, 668, 784, 3086, 3358 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3178, 3380 |
| BstYI | RGATCY | 5 cut(s) | 92, 668, 784, 3086, 3358 |
| Bsu15I | ATCGAT | 1 cut(s) | 3131 |
| Bsu36I | CCTNAGG | 1 cut(s) | 356 |
| BsuRI | GGCC | 7 cut(s) | 56, 164, 1107, 2450, 3093, 3214, 3302 |
| BsuTUI | ATCGAT | 1 cut(s) | 3131 |
| BtgZI | GCGATG | 1 cut(s) | 2133 |
| BtsCI | GGATG | 5 cut(s) | 239, 1333, 2032, 3025, 3064 |
| BtsI | GCAGTG | 3 cut(s) | 1341, 2847, 3140 |
| BtsIMutI | CAGTG | 8 cut(s) | 706, 1140, 1192, 1341, 1576, 2269, 2847, 3140 |
| BveI | ACCTGC | 1 cut(s) | 2529 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1613 |
| CciI | TCATGA | 3 cut(s) | 2611, 2739, 2853 |
| CfoI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 4 cut(s) | 434, 1106, 2448, 3300 |
| Cfr9I | CCCGGG | 4 cut(s) | 32, 598, 1152, 3296 |
| ClaI | ATCGAT | 1 cut(s) | 3131 |
| CseI | GACGC | 4 cut(s) | 141, 462, 1330, 2154 |
| Csp6I | GTAC | 7 cut(s) | 361, 509, 1910, 1941, 2294, 3351, 3490 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 312, 347 |
| CviQI | GTAC | 7 cut(s) | 361, 509, 1910, 1941, 2294, 3351, 3490 |
| DraI | TTTAAA | 2 cut(s) | 1665, 3459 |
| DraIII | CACNNNGTG | 1 cut(s) | 701 |
| EaeI | YGGCCR | 4 cut(s) | 54, 162, 3091, 3212 |
| Eam1104I | CTCTTC | 3 cut(s) | 369, 1701, 2151 |
| EarI | CTCTTC | 3 cut(s) | 369, 1701, 2151 |
| EciI | GGCGGA | 2 cut(s) | 75, 155 |
| Ecl136II | GAGCTC | 1 cut(s) | 3524 |
| Eco130I | CCWWGG | 4 cut(s) | 581, 968, 1480, 2871 |
| Eco24I | GRGCYC | 3 cut(s) | 32, 619, 3526 |
| Eco31I | GGTCTC | 1 cut(s) | 564 |
| Eco32I | GATATC | 1 cut(s) | 2255 |
| Eco47I | GGWCC | 1 cut(s) | 434 |
| Eco53kI | GAGCTC | 1 cut(s) | 3524 |
| Eco57I | CTGAAG | 9 cut(s) | 32, 1400, 1935, 2190, 2613, 2625, 3488, 3551, 3569 |
| Eco72I | CACGTG | 2 cut(s) | 1061, 3188 |
| Eco81I | CCTNAGG | 1 cut(s) | 356 |
| Eco88I | CYCGRG | 5 cut(s) | 32, 598, 1152, 3296, 3424 |
| EcoICRI | GAGCTC | 1 cut(s) | 3524 |
| EcoRI | GAATTC | 4 cut(s) | 219, 1846, 2227, 2551 |
| EcoRII | CCWGG | 3 cut(s) | 3054, 3093, 3372 |
| EcoRV | GATATC | 1 cut(s) | 2255 |
| EcoT14I | CCWWGG | 4 cut(s) | 581, 968, 1480, 2871 |
| EcoT22I | ATGCAT | 2 cut(s) | 2093, 2503 |
| EcoT38I | GRGCYC | 3 cut(s) | 32, 619, 3526 |
| ErhI | CCWWGG | 4 cut(s) | 581, 968, 1480, 2871 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1566, 1598 |
| FaqI | GGGAC | 5 cut(s) | 541, 1134, 1136, 1399, 3294 |
| FauI | CCCGC | 1 cut(s) | 123 |
| FauNDI | CATATG | 3 cut(s) | 2355, 2503, 3498 |
| FbaI | TGATCA | 1 cut(s) | 1006 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| FokI | GGATG | 5 cut(s) | 226, 1340, 2039, 3032, 3071 |
| FriOI | GRGCYC | 3 cut(s) | 32, 619, 3526 |
| GlaI | GCGC | 4 cut(s) | 305, 821, 1205, 1824 |
| GsaI | CCCAGC | 2 cut(s) | 372, 2779 |
| GsuI | CTGGAG | 3 cut(s) | 633, 1116, 2318 |
| HaeII | RGCGCY | 2 cut(s) | 823, 1826 |
| HaeIII | GGCC | 7 cut(s) | 56, 164, 1107, 2450, 3093, 3214, 3302 |
| HgaI | GACGC | 4 cut(s) | 141, 462, 1330, 2154 |
| HhaI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| Hin1I | GRCGYC | 2 cut(s) | 152, 726 |
| Hin6I | GCGC | 4 cut(s) | 304, 820, 1204, 1823 |
| HinP1I | GCGC | 4 cut(s) | 304, 820, 1204, 1823 |
| HincII | GTYRAC | 2 cut(s) | 477, 965 |
| HindII | GTYRAC | 2 cut(s) | 477, 965 |
| HindIII | AAGCTT | 4 cut(s) | 210, 1580, 1874, 2192 |
| HphI | GGTGA | 4 cut(s) | 1017, 1254, 2212, 2804 |
| Hpy166II | GTNNAC | 6 cut(s) | 13, 477, 965, 1190, 2267, 2294 |
| Hpy8I | GTNNAC | 6 cut(s) | 13, 477, 965, 1190, 2267, 2294 |
| Hpy99I | CGWCG | 6 cut(s) | 10, 103, 157, 160, 809, 1324 |
| HpyCH4III | ACNGT | 8 cut(s) | 17, 701, 1014, 1187, 1285, 1571, 1933, 2264 |
| HpyCH4IV | ACGT | 5 cut(s) | 726, 807, 1060, 2995, 3187 |
| HpySE526I | ACGT | 5 cut(s) | 726, 807, 1060, 2995, 3187 |
| Hsp92I | GRCGYC | 2 cut(s) | 152, 726 |
| HspAI | GCGC | 4 cut(s) | 304, 820, 1204, 1823 |
| KroI | GCCGGC | 1 cut(s) | 56 |
| KroNI | GCCGGC | 1 cut(s) | 58 |
| Ksp22I | TGATCA | 1 cut(s) | 1006 |
| LguI | GCTCTTC | 1 cut(s) | 2151 |
| LmnI | GCTCC | 7 cut(s) | 27, 118, 301, 614, 1399, 1634, 1960 |
| MaeII | ACGT | 5 cut(s) | 726, 807, 1060, 2995, 3187 |
| MaeIII | GTNAC | 9 cut(s) | 727, 1030, 1178, 1513, 2921, 3050, 3098, 3181, 3330 |
| MfeI | CAATTG | 3 cut(s) | 1533, 2939, 3176 |
| MflI | RGATCY | 5 cut(s) | 92, 668, 784, 3086, 3358 |
| MhlI | GDGCHC | 5 cut(s) | 32, 619, 1066, 1142, 3526 |
| MlsI | TGGCCA | 2 cut(s) | 3093, 3214 |
| MluNI | TGGCCA | 2 cut(s) | 3093, 3214 |
| MlyI | GAGTC | 2 cut(s) | 523, 3416 |
| MmeI | TCCRAC | 5 cut(s) | 5, 916, 1460, 2265, 3250 |
| Mox20I | TGGCCA | 2 cut(s) | 3093, 3214 |
| Mph1103I | ATGCAT | 2 cut(s) | 2093, 2503 |
| MroNI | GCCGGC | 1 cut(s) | 56 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1863, 2733 |
| MscI | TGGCCA | 2 cut(s) | 3093, 3214 |
| MslI | CAYNNNNRTG | 5 cut(s) | 600, 734, 1185, 2496, 2790 |
| Msp20I | TGGCCA | 2 cut(s) | 3093, 3214 |
| MspA1I | CMGCKG | 2 cut(s) | 124, 3589 |
| MunI | CAATTG | 3 cut(s) | 1533, 2939, 3176 |
| Mva1269I | GAATGC | 2 cut(s) | 2458, 2503 |
| MvaI | CCWGG | 3 cut(s) | 3056, 3095, 3374 |
| MvnI | CGCG | 1 cut(s) | 870 |
| NaeI | GCCGGC | 1 cut(s) | 58 |
| NciI | CCSGG | 9 cut(s) | 21, 33, 34, 599, 600, 1153, 1154, 3297, 3298 |
| NdeI | CATATG | 3 cut(s) | 2355, 2503, 3498 |
| NgoMIV | GCCGGC | 1 cut(s) | 56 |
| NlaIV | GGNNCC | 7 cut(s) | 29, 120, 616, 708, 3290, 3301, 3360 |
| NmuCI | GTSAC | 3 cut(s) | 727, 1178, 2921 |
| NsiI | ATGCAT | 2 cut(s) | 2093, 2503 |
| NspI | RCATGY | 6 cut(s) | 1369, 1449, 1888, 1900, 2091, 2584 |
| OliI | CACNNNNGTG | 2 cut(s) | 600, 1185 |
| PaeI | GCATGC | 1 cut(s) | 2091 |
| PaeR7I | CTCGAG | 1 cut(s) | 3424 |
| PagI | TCATGA | 3 cut(s) | 2611, 2739, 2853 |
| PciI | ACATGT | 3 cut(s) | 1365, 1445, 1896 |
| PciSI | GCTCTTC | 1 cut(s) | 2151 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 804 |
| PctI | GAATGC | 2 cut(s) | 2458, 2503 |
| PdiI | GCCGGC | 1 cut(s) | 58 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1863, 2733 |
| PfoI | TCCNGGA | 1 cut(s) | 3372 |
| PleI | GAGTC | 2 cut(s) | 523, 3416 |
| PmaCI | CACGTG | 2 cut(s) | 1061, 3188 |
| PmlI | CACGTG | 2 cut(s) | 1061, 3188 |
| PpsI | GAGTC | 2 cut(s) | 523, 3416 |
| Ppu21I | YACGTR | 2 cut(s) | 1061, 3188 |
| PscI | ACATGT | 3 cut(s) | 1365, 1445, 1896 |
| PshBI | ATTAAT | 2 cut(s) | 2079, 2886 |
| Psp124BI | GAGCTC | 1 cut(s) | 3526 |
| Psp6I | CCWGG | 3 cut(s) | 3054, 3093, 3372 |
| PspCI | CACGTG | 2 cut(s) | 1061, 3188 |
| PspFI | CCCAGC | 2 cut(s) | 368, 2775 |
| PspGI | CCWGG | 3 cut(s) | 3054, 3093, 3372 |
| PspN4I | GGNNCC | 7 cut(s) | 29, 120, 616, 708, 3290, 3301, 3360 |
| PspPI | GGNCC | 4 cut(s) | 434, 1106, 2448, 3300 |
| PspXI | VCTCGAGB | 1 cut(s) | 3424 |
| PstI | CTGCAG | 4 cut(s) | 316, 390, 1243, 2623 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1613 |
| PsuI | RGATCY | 5 cut(s) | 92, 668, 784, 3086, 3358 |
| PvuII | CAGCTG | 1 cut(s) | 3589 |
| RsaI | GTAC | 7 cut(s) | 362, 510, 1911, 1942, 2295, 3352, 3491 |
| RsaNI | GTAC | 7 cut(s) | 361, 509, 1910, 1941, 2294, 3351, 3490 |
| RseI | CAYNNNNRTG | 5 cut(s) | 600, 734, 1185, 2496, 2790 |
| SacI | GAGCTC | 1 cut(s) | 3526 |
| SapI | GCTCTTC | 1 cut(s) | 2151 |
| Sau96I | GGNCC | 4 cut(s) | 434, 1106, 2448, 3300 |
| SchI | GAGTC | 2 cut(s) | 523, 3416 |
| SduI | GDGCHC | 5 cut(s) | 32, 619, 1066, 1142, 3526 |
| Sfr274I | CTCGAG | 1 cut(s) | 3424 |
| SinI | GGWCC | 1 cut(s) | 434 |
| SlaI | CTCGAG | 1 cut(s) | 3424 |
| SmaI | CCCGGG | 4 cut(s) | 34, 600, 1154, 3298 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 600, 734, 1185, 2496, 2790 |
| SmlI | CTYRAG | 8 cut(s) | 882, 1069, 1551, 1936, 2000, 2825, 2947, 3424 |
| SmoI | CTYRAG | 8 cut(s) | 882, 1069, 1551, 1936, 2000, 2825, 2947, 3424 |
| SpeI | ACTAGT | 2 cut(s) | 1828, 3077 |
| SphI | GCATGC | 1 cut(s) | 2091 |
| SspI | AATATT | 6 cut(s) | 760, 1669, 1779, 2482, 2572, 2908 |
| SstI | GAGCTC | 1 cut(s) | 3526 |
| StyI | CCWWGG | 4 cut(s) | 581, 968, 1480, 2871 |
| TaaI | ACNGT | 8 cut(s) | 17, 701, 1014, 1187, 1285, 1571, 1933, 2264 |
| TaiI | ACGT | 5 cut(s) | 729, 810, 1063, 2998, 3190 |
| TaqI | TCGA | 8 cut(s) | 41, 101, 215, 804, 1322, 3131, 3151, 3425 |
| TatI | WGTACW | 2 cut(s) | 2293, 3350 |
| TauI | GCSGC | 5 cut(s) | 115, 124, 130, 164, 1058 |
| TscAI | CASTG | 8 cut(s) | 706, 1140, 1192, 1341, 1576, 2269, 2847, 3147 |
| TseFI | GTSAC | 3 cut(s) | 727, 1178, 2921 |
| Tsp45I | GTSAC | 3 cut(s) | 727, 1178, 2921 |
| TspGWI | ACGGA | 2 cut(s) | 2123, 2357 |
| TspMI | CCCGGG | 4 cut(s) | 32, 598, 1152, 3296 |
| TspRI | CASTG | 8 cut(s) | 706, 1140, 1192, 1341, 1576, 2269, 2847, 3147 |
| VpaK11BI | GGWCC | 1 cut(s) | 434 |
| VspI | ATTAAT | 2 cut(s) | 2079, 2886 |
| XapI | RAATTY | 8 cut(s) | 219, 1846, 2227, 2303, 2551, 2592, 2751, 3392 |
| XbaI | TCTAGA | 2 cut(s) | 1292, 2249 |
| XceI | RCATGY | 6 cut(s) | 1369, 1449, 1888, 1900, 2091, 2584 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3380 |
| XhoI | CTCGAG | 1 cut(s) | 3424 |
| XmaI | CCCGGG | 4 cut(s) | 32, 598, 1152, 3296 |
| XmiI | GTMKAC | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1863, 2733 |
| ZraI | GACGTC | 1 cut(s) | 727 |
| Zsp2I | ATGCAT | 2 cut(s) | 2093, 2503 |