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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12590 AT3G12590 |
| fragaria_vesca | FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g22001 FvH4_7g22001 |
| malus_domestica | MD01G1124000.v1.1 MD07G1194200.v1.1 |
| prunus_persica | Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 |
| pyrus_communis | pycom01g15050 pycom07g18300 |
| rosa_chinensis | RchiOBHm_Chr1g0366301 |
| rosa_laevigata | RLG00000027354 |
| rosa_multiflora | Rmu_co8229963.1_g000001 Rmu_co8389475.1_g000001 Rmu_ssc0000250.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290010 Rroxscaffold_4G00290260 |
| rosa_rugosa | Rorug01G0328600 Rorug01G0328600 Rorug01G0328700.1 |
| rosa_samantha | Rh1AG336900 Rh1BG298500 Rh1CG313800 Rh1DG329900 |
| rosa_wichuraiana | Rw1G029870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 729 |
| AccI | GTMKAC | 1 cut(s) | 12 |
| AccII | CGCG | 1 cut(s) | 870 |
| AclWI | GGATC | 1 cut(s) | 663 |
| AcoI | YGGCCR | 2 cut(s) | 54, 162 |
| AcsI | RAATTY | 4 cut(s) | 219, 877, 1846, 2227 |
| AcuI | CTGAAG | 4 cut(s) | 32, 1400, 1935, 2190 |
| AcvI | CACGTG | 1 cut(s) | 1061 |
| AcyI | GRCGYC | 2 cut(s) | 152, 726 |
| AfaI | GTAC | 4 cut(s) | 362, 510, 1911, 1942 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 678, 1071, 1072 |
| AflIII | ACRYGT | 3 cut(s) | 1365, 1445, 1896 |
| AgsI | TTSAA | 9 cut(s) | 343, 676, 748, 764, 791, 1210, 1538, 1652, 2364 |
| AhlI | ACTAGT | 1 cut(s) | 1828 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 414, 446 |
| AleI | CACNNNNGTG | 2 cut(s) | 600, 1185 |
| Alw21I | GWGCWC | 1 cut(s) | 1142 |
| Alw26I | GTCTC | 7 cut(s) | 371, 456, 564, 573, 933, 1922, 1939 |
| AlwI | GGATC | 1 cut(s) | 663 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1613 |
| Ama87I | CYCGRG | 3 cut(s) | 32, 598, 1152 |
| AoxI | GGCC | 3 cut(s) | 54, 162, 1105 |
| ApoI | RAATTY | 4 cut(s) | 219, 877, 1846, 2227 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2357, 2389 |
| AseI | ATTAAT | 1 cut(s) | 2079 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1863 |
| AspLEI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| AspS9I | GGNCC | 2 cut(s) | 434, 1106 |
| AsuC2I | CCSGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| AsuHPI | GGTGA | 3 cut(s) | 1017, 1254, 2212 |
| AvaI | CYCGRG | 3 cut(s) | 32, 598, 1152 |
| AvaII | GGWCC | 1 cut(s) | 434 |
| AxyI | CCTNAGG | 1 cut(s) | 356 |
| BaeGI | GKGCMC | 1 cut(s) | 1066 |
| BanII | GRGCYC | 2 cut(s) | 32, 619 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 366, 398 |
| BbrPI | CACGTG | 1 cut(s) | 1061 |
| BbsI | GAAGAC | 2 cut(s) | 645, 2408 |
| Bbv12I | GWGCWC | 1 cut(s) | 1142 |
| BbvCI | CCTCAGC | 2 cut(s) | 1218, 1633 |
| BccI | CCATC | 4 cut(s) | 247, 767, 1318, 1615 |
| BceAI | ACGGC | 3 cut(s) | 1303, 2159, 2285 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 377, 411, 1034, 1068 |
| BclI | TGATCA | 1 cut(s) | 1006 |
| BcnI | CCSGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| BcoDI | GTCTC | 7 cut(s) | 371, 456, 564, 573, 933, 1922, 1939 |
| BcuI | ACTAGT | 1 cut(s) | 1828 |
| BfaI | CTAG | 8 cut(s) | 513, 908, 1110, 1293, 1502, 1829, 2012, 2250 |
| BfmI | CTRYAG | 6 cut(s) | 13, 312, 386, 1183, 1239, 2097 |
| BfoI | RGCGCY | 2 cut(s) | 823, 1826 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BglII | AGATCT | 2 cut(s) | 92, 784 |
| BlpI | GCTNAGC | 2 cut(s) | 686, 1578 |
| Bme1390I | CCNGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| Bme18I | GGWCC | 1 cut(s) | 434 |
| BmeT110I | CYCGRG | 3 cut(s) | 32, 598, 1152 |
| BmgT120I | GGNCC | 2 cut(s) | 434, 1106 |
| BmiI | GGNNCC | 4 cut(s) | 29, 120, 616, 708 |
| BmrFI | CCNGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| BmrI | ACTGGG | 1 cut(s) | 711 |
| BmsI | GCATC | 9 cut(s) | 248, 491, 1094, 1265, 1318, 1513, 2080, 2152, 2230 |
| BmuI | ACTGGG | 1 cut(s) | 711 |
| BpiI | GAAGAC | 2 cut(s) | 645, 2408 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1919, 1951 |
| BpmI | CTGGAG | 2 cut(s) | 633, 1116 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1218, 1633 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 686, 1578 |
| BpuEI | CTTGAG | 5 cut(s) | 867, 1090, 1536, 1921, 2021 |
| BpuMI | CCSGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| BsaAI | YACGTR | 1 cut(s) | 1061 |
| BsaHI | GRCGYC | 2 cut(s) | 152, 726 |
| BsaI | GGTCTC | 1 cut(s) | 564 |
| BsaJI | CCNNGG | 7 cut(s) | 31, 32, 581, 598, 968, 1151, 1152 |
| BsaWI | WCCGGW | 2 cut(s) | 441, 1788 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 54, 84, 336, 366, 478, 508, 1378, 1408 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 678, 1071, 1072 |
| Bse1I | ACTGG | 4 cut(s) | 706, 1028, 1133, 2382 |
| Bse21I | CCTNAGG | 1 cut(s) | 356 |
| Bse3DI | GCAATG | 3 cut(s) | 288, 1233, 1867 |
| BseDI | CCNNGG | 7 cut(s) | 31, 32, 581, 598, 968, 1151, 1152 |
| BseGI | GGATG | 3 cut(s) | 239, 1333, 2032 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 678, 1071, 1072 |
| BseMI | GCAATG | 3 cut(s) | 288, 1233, 1867 |
| BseMII | CTCAG | 7 cut(s) | 80, 215, 285, 826, 1209, 1242, 1647 |
| BseNI | ACTGG | 4 cut(s) | 706, 1028, 1133, 2382 |
| BseRI | GAGGAG | 5 cut(s) | 75, 78, 81, 1386, 1621 |
| BseSI | GKGCMC | 1 cut(s) | 1066 |
| BseYI | CCCAGC | 2 cut(s) | 368, 2407 |
| BsgI | GTGCAG | 2 cut(s) | 678, 939 |
| Bsh1236I | CGCG | 1 cut(s) | 870 |
| BshFI | GGCC | 3 cut(s) | 56, 164, 1107 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1142 |
| BsiHKCI | CYCGRG | 3 cut(s) | 32, 598, 1152 |
| BsiSI | CCGG | 9 cut(s) | 20, 33, 57, 116, 442, 599, 1104, 1153, 1789 |
| BslFI | GGGAC | 4 cut(s) | 541, 1134, 1136, 1399 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 678, 1071, 1072 |
| BsmAI | GTCTC | 7 cut(s) | 371, 456, 564, 573, 933, 1922, 1939 |
| BsmFI | GGGAC | 4 cut(s) | 541, 1134, 1136, 1399 |
| BsmI | GAATGC | 1 cut(s) | 2356 |
| BsnI | GGCC | 3 cut(s) | 56, 164, 1107 |
| Bso31I | GGTCTC | 1 cut(s) | 564 |
| BsoBI | CYCGRG | 3 cut(s) | 32, 598, 1152 |
| Bsp1286I | GDGCHC | 4 cut(s) | 32, 619, 1066, 1142 |
| Bsp143I | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 686, 1578 |
| BspANI | GGCC | 3 cut(s) | 56, 164, 1107 |
| BspCNI | CTCAG | 7 cut(s) | 81, 216, 286, 825, 1210, 1243, 1646 |
| BspFNI | CGCG | 1 cut(s) | 870 |
| BspLI | GGNNCC | 4 cut(s) | 29, 120, 616, 708 |
| BspMAI | CTGCAG | 3 cut(s) | 316, 390, 1243 |
| BspPI | GGATC | 1 cut(s) | 663 |
| BspQI | GCTCTTC | 1 cut(s) | 2151 |
| BspTNI | GGTCTC | 1 cut(s) | 564 |
| BsrDI | GCAATG | 3 cut(s) | 288, 1233, 1867 |
| BsrI | ACTGG | 4 cut(s) | 706, 1028, 1133, 2382 |
| BssECI | CCNNGG | 7 cut(s) | 31, 32, 581, 598, 968, 1151, 1152 |
| BssMI | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| BssNI | GRCGYC | 2 cut(s) | 152, 726 |
| BssT1I | CCWWGG | 2 cut(s) | 581, 968 |
| Bst4CI | ACNGT | 7 cut(s) | 17, 1014, 1187, 1285, 1571, 1933, 2264 |
| Bst6I | CTCTTC | 3 cut(s) | 369, 1701, 2151 |
| BstACI | GRCGYC | 2 cut(s) | 152, 726 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 320 |
| BstBAI | YACGTR | 1 cut(s) | 1061 |
| BstC8I | GCNNGC | 9 cut(s) | 132, 166, 170, 181, 824, 1584, 1748, 1874, 2089 |
| BstF5I | GGATG | 3 cut(s) | 239, 1333, 2032 |
| BstFNI | CGCG | 1 cut(s) | 870 |
| BstH2I | RGCGCY | 2 cut(s) | 823, 1826 |
| BstHHI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| BstKTI | GATC | 9 cut(s) | 95, 397, 590, 671, 787, 868, 1009, 1607, 1972 |
| BstMAI | GTCTC | 7 cut(s) | 371, 456, 564, 573, 933, 1922, 1939 |
| BstMBI | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| BstNSI | RCATGY | 5 cut(s) | 1369, 1449, 1888, 1900, 2091 |
| BstSCI | CCNGG | 7 cut(s) | 19, 31, 32, 597, 598, 1151, 1152 |
| BstSFI | CTRYAG | 6 cut(s) | 13, 312, 386, 1183, 1239, 2097 |
| BstSLI | GKGCMC | 1 cut(s) | 1066 |
| BstUI | CGCG | 1 cut(s) | 870 |
| BstV2I | GAAGAC | 2 cut(s) | 645, 2408 |
| BstX2I | RGATCY | 3 cut(s) | 92, 668, 784 |
| BstYI | RGATCY | 3 cut(s) | 92, 668, 784 |
| Bsu36I | CCTNAGG | 1 cut(s) | 356 |
| BsuRI | GGCC | 3 cut(s) | 56, 164, 1107 |
| BtgZI | GCGATG | 1 cut(s) | 2133 |
| BtsCI | GGATG | 3 cut(s) | 239, 1333, 2032 |
| BtsI | GCAGTG | 1 cut(s) | 1341 |
| BtsIMutI | CAGTG | 7 cut(s) | 699, 1140, 1192, 1341, 1576, 2269, 2375 |
| Cac8I | GCNNGC | 9 cut(s) | 132, 166, 170, 181, 824, 1584, 1748, 1874, 2089 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1613 |
| CfoI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| Cfr13I | GGNCC | 2 cut(s) | 434, 1106 |
| Cfr9I | CCCGGG | 3 cut(s) | 32, 598, 1152 |
| CseI | GACGC | 4 cut(s) | 141, 462, 1330, 2154 |
| Csp6I | GTAC | 4 cut(s) | 361, 509, 1910, 1941 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 312, 347 |
| CviAII | CATG | 9 cut(s) | 176, 943, 1366, 1446, 1490, 1656, 1885, 1897, 2088 |
| CviQI | GTAC | 4 cut(s) | 361, 509, 1910, 1941 |
| DpnI | GATC | 9 cut(s) | 94, 396, 589, 670, 786, 867, 1008, 1606, 1971 |
| DpnII | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| DraI | TTTAAA | 1 cut(s) | 1665 |
| EaeI | YGGCCR | 2 cut(s) | 54, 162 |
| Eam1104I | CTCTTC | 3 cut(s) | 369, 1701, 2151 |
| EarI | CTCTTC | 3 cut(s) | 369, 1701, 2151 |
| EciI | GGCGGA | 1 cut(s) | 155 |
| Eco130I | CCWWGG | 2 cut(s) | 581, 968 |
| Eco24I | GRGCYC | 2 cut(s) | 32, 619 |
| Eco31I | GGTCTC | 1 cut(s) | 564 |
| Eco32I | GATATC | 1 cut(s) | 2255 |
| Eco47I | GGWCC | 1 cut(s) | 434 |
| Eco57I | CTGAAG | 4 cut(s) | 32, 1400, 1935, 2190 |
| Eco72I | CACGTG | 1 cut(s) | 1061 |
| Eco81I | CCTNAGG | 1 cut(s) | 356 |
| Eco88I | CYCGRG | 3 cut(s) | 32, 598, 1152 |
| EcoRI | GAATTC | 3 cut(s) | 219, 1846, 2227 |
| EcoRV | GATATC | 1 cut(s) | 2255 |
| EcoT14I | CCWWGG | 2 cut(s) | 581, 968 |
| EcoT22I | ATGCAT | 1 cut(s) | 2093 |
| EcoT38I | GRGCYC | 2 cut(s) | 32, 619 |
| ErhI | CCWWGG | 2 cut(s) | 581, 968 |
| FaeI | CATG | 9 cut(s) | 179, 946, 1369, 1449, 1493, 1659, 1888, 1900, 2091 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1566, 1598 |
| FaqI | GGGAC | 4 cut(s) | 541, 1134, 1136, 1399 |
| FatI | CATG | 9 cut(s) | 175, 942, 1365, 1445, 1489, 1655, 1884, 1896, 2087 |
| FauI | CCCGC | 1 cut(s) | 123 |
| FbaI | TGATCA | 1 cut(s) | 1006 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| FokI | GGATG | 3 cut(s) | 226, 1340, 2039 |
| FriOI | GRGCYC | 2 cut(s) | 32, 619 |
| FspBI | CTAG | 8 cut(s) | 513, 908, 1110, 1293, 1502, 1829, 2012, 2250 |
| GlaI | GCGC | 4 cut(s) | 305, 821, 1205, 1824 |
| GsaI | CCCAGC | 2 cut(s) | 372, 2411 |
| GsuI | CTGGAG | 2 cut(s) | 633, 1116 |
| HaeII | RGCGCY | 2 cut(s) | 823, 1826 |
| HaeIII | GGCC | 3 cut(s) | 56, 164, 1107 |
| HapII | CCGG | 9 cut(s) | 20, 33, 57, 116, 442, 599, 1104, 1153, 1789 |
| HgaI | GACGC | 4 cut(s) | 141, 462, 1330, 2154 |
| HhaI | GCGC | 4 cut(s) | 306, 822, 1206, 1825 |
| Hin1I | GRCGYC | 2 cut(s) | 152, 726 |
| Hin1II | CATG | 9 cut(s) | 179, 946, 1369, 1449, 1493, 1659, 1888, 1900, 2091 |
| Hin6I | GCGC | 4 cut(s) | 304, 820, 1204, 1823 |
| HinP1I | GCGC | 4 cut(s) | 304, 820, 1204, 1823 |
| HincII | GTYRAC | 2 cut(s) | 477, 965 |
| HindII | GTYRAC | 2 cut(s) | 477, 965 |
| HindIII | AAGCTT | 4 cut(s) | 210, 1580, 1874, 2192 |
| HpaII | CCGG | 9 cut(s) | 20, 33, 57, 116, 442, 599, 1104, 1153, 1789 |
| HphI | GGTGA | 3 cut(s) | 1017, 1254, 2212 |
| Hpy166II | GTNNAC | 5 cut(s) | 13, 477, 965, 1190, 2267 |
| Hpy8I | GTNNAC | 5 cut(s) | 13, 477, 965, 1190, 2267 |
| Hpy99I | CGWCG | 6 cut(s) | 10, 103, 157, 160, 809, 1324 |
| HpyAV | CCTTC | 3 cut(s) | 650, 682, 1032 |
| HpyCH4III | ACNGT | 7 cut(s) | 17, 1014, 1187, 1285, 1571, 1933, 2264 |
| HpyCH4IV | ACGT | 3 cut(s) | 726, 807, 1060 |
| HpySE526I | ACGT | 3 cut(s) | 726, 807, 1060 |
| Hsp92I | GRCGYC | 2 cut(s) | 152, 726 |
| Hsp92II | CATG | 9 cut(s) | 179, 946, 1369, 1449, 1493, 1659, 1888, 1900, 2091 |
| HspAI | GCGC | 4 cut(s) | 304, 820, 1204, 1823 |
| Ksp22I | TGATCA | 1 cut(s) | 1006 |
| Kzo9I | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| LguI | GCTCTTC | 1 cut(s) | 2151 |
| LmnI | GCTCC | 8 cut(s) | 27, 118, 301, 614, 1399, 1634, 1960, 2350 |
| LweI | GCATC | 9 cut(s) | 248, 491, 1094, 1265, 1318, 1513, 2080, 2152, 2230 |
| MaeI | CTAG | 8 cut(s) | 513, 908, 1110, 1293, 1502, 1829, 2012, 2250 |
| MaeII | ACGT | 3 cut(s) | 726, 807, 1060 |
| MaeIII | GTNAC | 6 cut(s) | 459, 727, 1030, 1178, 1513, 2373 |
| MalI | GATC | 9 cut(s) | 94, 396, 589, 670, 786, 867, 1008, 1606, 1971 |
| MboI | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| MfeI | CAATTG | 1 cut(s) | 1533 |
| MflI | RGATCY | 3 cut(s) | 92, 668, 784 |
| MhlI | GDGCHC | 4 cut(s) | 32, 619, 1066, 1142 |
| MlyI | GAGTC | 1 cut(s) | 523 |
| MmeI | TCCRAC | 3 cut(s) | 5, 916, 1460 |
| Mph1103I | ATGCAT | 1 cut(s) | 2093 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1863 |
| MseI | TTAA | 9 cut(s) | 545, 1298, 1346, 1428, 1664, 1818, 2079, 2190, 2387 |
| MslI | CAYNNNNRTG | 3 cut(s) | 600, 734, 1185 |
| MspA1I | CMGCKG | 2 cut(s) | 124, 1217 |
| MspI | CCGG | 9 cut(s) | 20, 33, 57, 116, 442, 599, 1104, 1153, 1789 |
| MspR9I | CCNGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| MunI | CAATTG | 1 cut(s) | 1533 |
| Mva1269I | GAATGC | 1 cut(s) | 2356 |
| MvnI | CGCG | 1 cut(s) | 870 |
| NciI | CCSGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| NdeII | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| NlaIII | CATG | 9 cut(s) | 179, 946, 1369, 1449, 1493, 1659, 1888, 1900, 2091 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 120, 616, 708 |
| NmuCI | GTSAC | 4 cut(s) | 459, 727, 1178, 2373 |
| NsiI | ATGCAT | 1 cut(s) | 2093 |
| NspI | RCATGY | 5 cut(s) | 1369, 1449, 1888, 1900, 2091 |
| OliI | CACNNNNGTG | 2 cut(s) | 600, 1185 |
| PaeI | GCATGC | 1 cut(s) | 2091 |
| PciI | ACATGT | 3 cut(s) | 1365, 1445, 1896 |
| PciSI | GCTCTTC | 1 cut(s) | 2151 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 804 |
| PctI | GAATGC | 1 cut(s) | 2356 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1863 |
| PleI | GAGTC | 1 cut(s) | 523 |
| PmaCI | CACGTG | 1 cut(s) | 1061 |
| PmlI | CACGTG | 1 cut(s) | 1061 |
| PpsI | GAGTC | 1 cut(s) | 523 |
| Ppu21I | YACGTR | 1 cut(s) | 1061 |
| PscI | ACATGT | 3 cut(s) | 1365, 1445, 1896 |
| PshBI | ATTAAT | 1 cut(s) | 2079 |
| PspCI | CACGTG | 1 cut(s) | 1061 |
| PspFI | CCCAGC | 2 cut(s) | 368, 2407 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 120, 616, 708 |
| PspPI | GGNCC | 2 cut(s) | 434, 1106 |
| PstI | CTGCAG | 3 cut(s) | 316, 390, 1243 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1613 |
| PsuI | RGATCY | 3 cut(s) | 92, 668, 784 |
| PvuII | CAGCTG | 1 cut(s) | 1217 |
| RsaI | GTAC | 4 cut(s) | 362, 510, 1911, 1942 |
| RsaNI | GTAC | 4 cut(s) | 361, 509, 1910, 1941 |
| RseI | CAYNNNNRTG | 3 cut(s) | 600, 734, 1185 |
| SapI | GCTCTTC | 1 cut(s) | 2151 |
| SaqAI | TTAA | 9 cut(s) | 545, 1298, 1346, 1428, 1664, 1818, 2079, 2190, 2387 |
| Sau3AI | GATC | 9 cut(s) | 92, 394, 587, 668, 784, 865, 1006, 1604, 1969 |
| Sau96I | GGNCC | 2 cut(s) | 434, 1106 |
| SchI | GAGTC | 1 cut(s) | 523 |
| ScrFI | CCNGG | 7 cut(s) | 21, 33, 34, 599, 600, 1153, 1154 |
| SduI | GDGCHC | 4 cut(s) | 32, 619, 1066, 1142 |
| SfaNI | GCATC | 9 cut(s) | 248, 491, 1094, 1265, 1318, 1513, 2080, 2152, 2230 |
| SfcI | CTRYAG | 6 cut(s) | 13, 312, 386, 1183, 1239, 2097 |
| SinI | GGWCC | 1 cut(s) | 434 |
| SmaI | CCCGGG | 3 cut(s) | 34, 600, 1154 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 600, 734, 1185 |
| SmlI | CTYRAG | 5 cut(s) | 882, 1069, 1551, 1936, 2000 |
| SmoI | CTYRAG | 5 cut(s) | 882, 1069, 1551, 1936, 2000 |
| SpeI | ACTAGT | 1 cut(s) | 1828 |
| SphI | GCATGC | 1 cut(s) | 2091 |
| SspI | AATATT | 4 cut(s) | 760, 1669, 1779, 2384 |
| SspMI | CTAG | 8 cut(s) | 513, 908, 1110, 1293, 1502, 1829, 2012, 2250 |
| StyD4I | CCNGG | 7 cut(s) | 19, 31, 32, 597, 598, 1151, 1152 |
| StyI | CCWWGG | 2 cut(s) | 581, 968 |
| TaaI | ACNGT | 7 cut(s) | 17, 1014, 1187, 1285, 1571, 1933, 2264 |
| TaiI | ACGT | 3 cut(s) | 729, 810, 1063 |
| TaqI | TCGA | 5 cut(s) | 41, 101, 215, 804, 1322 |
| TauI | GCSGC | 5 cut(s) | 115, 124, 130, 164, 1058 |
| Tru1I | TTAA | 9 cut(s) | 545, 1298, 1346, 1428, 1664, 1818, 2079, 2190, 2387 |
| Tru9I | TTAA | 9 cut(s) | 545, 1298, 1346, 1428, 1664, 1818, 2079, 2190, 2387 |
| TscAI | CASTG | 7 cut(s) | 706, 1140, 1192, 1341, 1576, 2269, 2382 |
| TseFI | GTSAC | 4 cut(s) | 459, 727, 1178, 2373 |
| Tsp45I | GTSAC | 4 cut(s) | 459, 727, 1178, 2373 |
| TspDTI | ATGAA | 9 cut(s) | 119, 794, 959, 971, 1459, 1478, 1856, 2043, 2097 |
| TspGWI | ACGGA | 1 cut(s) | 2123 |
| TspMI | CCCGGG | 3 cut(s) | 32, 598, 1152 |
| TspRI | CASTG | 7 cut(s) | 706, 1140, 1192, 1341, 1576, 2269, 2382 |
| VpaK11BI | GGWCC | 1 cut(s) | 434 |
| VspI | ATTAAT | 1 cut(s) | 2079 |
| XapI | RAATTY | 4 cut(s) | 219, 877, 1846, 2227 |
| XbaI | TCTAGA | 2 cut(s) | 1292, 2249 |
| XceI | RCATGY | 5 cut(s) | 1369, 1449, 1888, 1900, 2091 |
| XmaI | CCCGGG | 3 cut(s) | 32, 598, 1152 |
| XmiI | GTMKAC | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1863 |
| XspI | CTAG | 8 cut(s) | 513, 908, 1110, 1293, 1502, 1829, 2012, 2250 |
| ZraI | GACGTC | 1 cut(s) | 727 |
| Zsp2I | ATGCAT | 1 cut(s) | 2093 |