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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12590 AT3G12590 |
| fragaria_vesca | FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g21970 FvH4_7g22001 FvH4_7g22001 |
| malus_domestica | MD01G1124000.v1.1 MD07G1194200.v1.1 |
| prunus_persica | Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 Prupe.2G231600_v2.0.a1 |
| pyrus_communis | pycom01g15050 pycom07g18300 |
| rosa_chinensis | RchiOBHm_Chr1g0366301 |
| rosa_laevigata | RLG00000027354 |
| rosa_multiflora | Rmu_co8229963.1_g000001 Rmu_co8389475.1_g000001 Rmu_ssc0000250.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290010 Rroxscaffold_4G00290260 |
| rosa_rugosa | Rorug01G0328600 Rorug01G0328600 Rorug01G0328700.1 |
| rosa_samantha | Rh1AG336900 Rh1BG298500 Rh1CG313800 Rh1DG329900 |
| rosa_wichuraiana | Rw1G029870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3071 |
| Acc16I | TGCGCA | 1 cut(s) | 705 |
| Acc36I | ACCTGC | 1 cut(s) | 2550 |
| AccB1I | GGYRCC | 1 cut(s) | 3311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2715 |
| AccI | GTMKAC | 1 cut(s) | 3105 |
| AccII | CGCG | 2 cut(s) | 158, 1081 |
| AclI | AACGTT | 1 cut(s) | 343 |
| AclWI | GGATC | 5 cut(s) | 687, 813, 1035, 1315, 3365 |
| AcoI | YGGCCR | 1 cut(s) | 3224 |
| AcsI | RAATTY | 6 cut(s) | 216, 2238, 2324, 2760, 3058, 3404 |
| AcuI | CTGAAG | 6 cut(s) | 35, 122, 3441, 3491, 3500, 3589 |
| AcvI | CACGTG | 1 cut(s) | 3200 |
| AdeI | CACNNNGTG | 1 cut(s) | 725 |
| AfaI | GTAC | 7 cut(s) | 359, 534, 1932, 1963, 2869, 3364, 3503 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2715 |
| AflIII | ACRYGT | 6 cut(s) | 917, 1386, 1466, 1917, 3197, 3199 |
| AjnI | CCWGG | 4 cut(s) | 80, 3066, 3307, 3384 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 411, 443, 3498, 3530 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2351, 2383 |
| Alw21I | GWGCWC | 2 cut(s) | 198, 1163 |
| Alw26I | GTCTC | 6 cut(s) | 368, 453, 597, 666, 2409, 3128 |
| AlwI | GGATC | 5 cut(s) | 687, 813, 1035, 1315, 3365 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1634, 3374, 3544 |
| Ama87I | CYCGRG | 3 cut(s) | 35, 2189, 3436 |
| AoxI | GGCC | 6 cut(s) | 237, 1126, 1819, 1875, 2469, 3224 |
| ApoI | RAATTY | 6 cut(s) | 216, 2238, 2324, 2760, 3058, 3404 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1568, 1600, 1728, 1760 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1884, 2742 |
| AspA2I | CCTAGG | 1 cut(s) | 1501 |
| AspLEI | GCGC | 9 cut(s) | 126, 303, 556, 582, 706, 843, 1081, 1116, 2188 |
| AspS9I | GGNCC | 5 cut(s) | 238, 431, 1127, 1875, 2469 |
| AsuC2I | CCSGG | 2 cut(s) | 36, 37 |
| AsuHPI | GGTGA | 4 cut(s) | 893, 1038, 1546, 3673 |
| AsuNHI | GCTAGC | 1 cut(s) | 161 |
| AvaI | CYCGRG | 3 cut(s) | 35, 2189, 3436 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| AvrII | CCTAGG | 1 cut(s) | 1501 |
| BaeGI | GKGCMC | 1 cut(s) | 1649 |
| BalI | TGGCCA | 1 cut(s) | 3226 |
| BanI | GGYRCC | 1 cut(s) | 3311 |
| BanII | GRGCYC | 3 cut(s) | 35, 643, 3538 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 363, 395 |
| BbrPI | CACGTG | 1 cut(s) | 3200 |
| BbsI | GAAGAC | 1 cut(s) | 669 |
| Bbv12I | GWGCWC | 2 cut(s) | 198, 1163 |
| BbvCI | CCTCAGC | 2 cut(s) | 1239, 1654 |
| BccI | CCATC | 9 cut(s) | 244, 627, 788, 1339, 1636, 2311, 2520, 2709, 2717 |
| BceAI | ACGGC | 4 cut(s) | 510, 1324, 2306, 2814 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 374, 408 |
| BciT130I | CCWGG | 4 cut(s) | 82, 3068, 3309, 3386 |
| BclI | TGATCA | 1 cut(s) | 3127 |
| BcnI | CCSGG | 2 cut(s) | 36, 37 |
| BcoDI | GTCTC | 6 cut(s) | 368, 453, 597, 666, 2409, 3128 |
| BfmI | CTRYAG | 8 cut(s) | 132, 383, 1204, 1260, 1353, 2640, 3366, 3622 |
| BfoI | RGCGCY | 2 cut(s) | 557, 844 |
| BfuAI | ACCTGC | 1 cut(s) | 2550 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2671 |
| BglII | AGATCT | 1 cut(s) | 89 |
| BlnI | CCTAGG | 1 cut(s) | 1501 |
| BlpI | GCTNAGC | 3 cut(s) | 1179, 1599, 3537 |
| BmcAI | AGTACT | 1 cut(s) | 2869 |
| Bme1390I | CCNGG | 6 cut(s) | 36, 37, 82, 3068, 3309, 3386 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmeT110I | CYCGRG | 3 cut(s) | 35, 2189, 3436 |
| BmgT120I | GGNCC | 5 cut(s) | 238, 431, 1127, 1875, 2469 |
| BmiI | GGNNCC | 6 cut(s) | 32, 240, 640, 1942, 3302, 3313 |
| BmrFI | CCNGG | 6 cut(s) | 36, 37, 82, 3068, 3309, 3386 |
| BmrI | ACTGGG | 1 cut(s) | 3656 |
| BmtI | GCTAGC | 1 cut(s) | 165 |
| BmuI | ACTGGG | 1 cut(s) | 3656 |
| BoxI | GACNNNNGTC | 2 cut(s) | 429, 2829 |
| BpiI | GAAGAC | 1 cut(s) | 669 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 433, 465, 2950, 2982 |
| BpmI | CTGGAG | 1 cut(s) | 657 |
| Bpu10I | CCTNAGC | 3 cut(s) | 114, 1239, 1654 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1179, 1599, 3537 |
| BpuEI | CTTGAG | 7 cut(s) | 818, 1111, 1457, 1822, 2042, 2855, 2977 |
| BpuMI | CCSGG | 2 cut(s) | 36, 37 |
| BsaAI | YACGTR | 2 cut(s) | 920, 3200 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2858 |
| BsaWI | WCCGGW | 3 cut(s) | 438, 1809, 2120 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 909, 939 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2715 |
| Bse118I | RCCGGY | 1 cut(s) | 2624 |
| Bse1I | ACTGG | 4 cut(s) | 1049, 1192, 3090, 3651 |
| Bse3DI | GCAATG | 5 cut(s) | 285, 411, 1254, 1888, 3261 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2858 |
| BseBI | CCWGG | 4 cut(s) | 82, 3068, 3309, 3386 |
| BseGI | GGATG | 9 cut(s) | 182, 619, 973, 1150, 1354, 2934, 3076, 3430, 3483 |
| BseJI | GATNNNNATC | 1 cut(s) | 2858 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2715 |
| BseMI | GCAATG | 5 cut(s) | 285, 411, 1254, 1888, 3261 |
| BseMII | CTCAG | 8 cut(s) | 105, 282, 1230, 1263, 1668, 2121, 2423, 3551 |
| BseNI | ACTGG | 4 cut(s) | 1049, 1192, 3090, 3651 |
| BseRI | GAGGAG | 4 cut(s) | 87, 188, 2260, 3569 |
| BseSI | GKGCMC | 1 cut(s) | 1649 |
| BseYI | CCCAGC | 1 cut(s) | 307 |
| BsgI | GTGCAG | 4 cut(s) | 702, 960, 1398, 3267 |
| Bsh1236I | CGCG | 2 cut(s) | 158, 1081 |
| BshFI | GGCC | 6 cut(s) | 239, 1128, 1821, 1877, 2471, 3226 |
| BshNI | GGYRCC | 1 cut(s) | 3311 |
| BsiHKAI | GWGCWC | 2 cut(s) | 198, 1163 |
| BsiHKCI | CYCGRG | 3 cut(s) | 35, 2189, 3436 |
| BsiSI | CCGG | 8 cut(s) | 23, 36, 439, 623, 1154, 1810, 2121, 2625 |
| BslFI | GGGAC | 1 cut(s) | 239 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2715 |
| BsmAI | GTCTC | 6 cut(s) | 368, 453, 597, 666, 2409, 3128 |
| BsmBI | CGTCTC | 1 cut(s) | 368 |
| BsmFI | GGGAC | 1 cut(s) | 239 |
| BsmI | GAATGC | 3 cut(s) | 425, 1294, 1867 |
| BsnI | GGCC | 6 cut(s) | 239, 1128, 1821, 1877, 2471, 3226 |
| BsoBI | CYCGRG | 3 cut(s) | 35, 2189, 3436 |
| Bsp1286I | GDGCHC | 6 cut(s) | 35, 198, 643, 1163, 1649, 3538 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1179, 1599, 3537 |
| Bsp19I | CCATGG | 2 cut(s) | 452, 3024 |
| BspANI | GGCC | 6 cut(s) | 239, 1128, 1821, 1877, 2471, 3226 |
| BspCNI | CTCAG | 8 cut(s) | 106, 283, 1231, 1264, 1667, 2122, 2424, 3550 |
| BspFNI | CGCG | 2 cut(s) | 158, 1081 |
| BspHI | TCATGA | 4 cut(s) | 2632, 2748, 2862, 3130 |
| BspLI | GGNNCC | 6 cut(s) | 32, 240, 640, 1942, 3302, 3313 |
| BspMAI | CTGCAG | 6 cut(s) | 387, 1264, 1357, 2644, 3370, 3626 |
| BspMI | ACCTGC | 1 cut(s) | 2550 |
| BspOI | GCTAGC | 1 cut(s) | 165 |
| BspPI | GGATC | 5 cut(s) | 687, 813, 1035, 1315, 3365 |
| BspT107I | GGYRCC | 1 cut(s) | 3311 |
| BsrDI | GCAATG | 5 cut(s) | 285, 411, 1254, 1888, 3261 |
| BsrFI | RCCGGY | 1 cut(s) | 2624 |
| BsrI | ACTGG | 4 cut(s) | 1049, 1192, 3090, 3651 |
| BssAI | RCCGGY | 1 cut(s) | 2624 |
| BssT1I | CCWWGG | 5 cut(s) | 452, 605, 1501, 2880, 3024 |
| Bst2UI | CCWGG | 4 cut(s) | 82, 3068, 3309, 3386 |
| Bst6I | CTCTTC | 6 cut(s) | 366, 669, 1557, 1722, 3289, 3460 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 317, 3374 |
| BstBAI | YACGTR | 2 cut(s) | 920, 3200 |
| BstC8I | GCNNGC | 8 cut(s) | 163, 178, 845, 1159, 1605, 1895, 2603, 3629 |
| BstDSI | CCRYGG | 4 cut(s) | 156, 452, 1172, 3024 |
| BstEII | GGTNACC | 1 cut(s) | 1534 |
| BstF5I | GGATG | 9 cut(s) | 182, 619, 973, 1150, 1354, 2934, 3076, 3430, 3483 |
| BstFNI | CGCG | 2 cut(s) | 158, 1081 |
| BstH2I | RGCGCY | 2 cut(s) | 557, 844 |
| BstHHI | GCGC | 9 cut(s) | 126, 303, 556, 582, 706, 843, 1081, 1116, 2188 |
| BstMAI | GTCTC | 6 cut(s) | 368, 453, 597, 666, 2409, 3128 |
| BstNI | CCWGG | 4 cut(s) | 82, 3068, 3309, 3386 |
| BstNSI | RCATGY | 7 cut(s) | 1390, 1470, 1909, 1921, 2605, 3173, 3514 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 429, 2829 |
| BstPI | GGTNACC | 1 cut(s) | 1534 |
| BstSCI | CCNGG | 6 cut(s) | 34, 35, 80, 3066, 3307, 3384 |
| BstSFI | CTRYAG | 8 cut(s) | 132, 383, 1204, 1260, 1353, 2640, 3366, 3622 |
| BstSLI | GKGCMC | 1 cut(s) | 1649 |
| BstUI | CGCG | 2 cut(s) | 158, 1081 |
| BstV2I | GAAGAC | 1 cut(s) | 669 |
| BstX2I | RGATCY | 4 cut(s) | 89, 692, 805, 3370 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2519, 3190, 3392 |
| BstYI | RGATCY | 4 cut(s) | 89, 692, 805, 3370 |
| BsuRI | GGCC | 6 cut(s) | 239, 1128, 1821, 1877, 2471, 3226 |
| BtgI | CCRYGG | 4 cut(s) | 156, 452, 1172, 3024 |
| BtsCI | GGATG | 9 cut(s) | 182, 619, 973, 1150, 1354, 2934, 3076, 3430, 3483 |
| BtsI | GCAGTG | 3 cut(s) | 1362, 2856, 3152 |
| BveI | ACCTGC | 1 cut(s) | 2550 |
| Cac8I | GCNNGC | 8 cut(s) | 163, 178, 845, 1159, 1605, 1895, 2603, 3629 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1634, 3374, 3544 |
| CciI | TCATGA | 4 cut(s) | 2632, 2748, 2862, 3130 |
| CfoI | GCGC | 9 cut(s) | 126, 303, 556, 582, 706, 843, 1081, 1116, 2188 |
| Cfr10I | RCCGGY | 1 cut(s) | 2624 |
| Cfr13I | GGNCC | 5 cut(s) | 238, 431, 1127, 1875, 2469 |
| Cfr42I | CCGCGG | 1 cut(s) | 159 |
| Cfr9I | CCCGGG | 1 cut(s) | 35 |
| CseI | GACGC | 1 cut(s) | 1351 |
| Csp6I | GTAC | 7 cut(s) | 358, 533, 1931, 1962, 2868, 3363, 3502 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 309, 344 |
| CviQI | GTAC | 7 cut(s) | 358, 533, 1931, 1962, 2868, 3363, 3502 |
| DraI | TTTAAA | 1 cut(s) | 1686 |
| DraIII | CACNNNGTG | 1 cut(s) | 725 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3071 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3071 |
| EaeI | YGGCCR | 1 cut(s) | 3224 |
| Eam1104I | CTCTTC | 6 cut(s) | 366, 669, 1557, 1722, 3289, 3460 |
| EarI | CTCTTC | 6 cut(s) | 366, 669, 1557, 1722, 3289, 3460 |
| Eco130I | CCWWGG | 5 cut(s) | 452, 605, 1501, 2880, 3024 |
| Eco24I | GRGCYC | 3 cut(s) | 35, 643, 3538 |
| Eco32I | GATATC | 1 cut(s) | 2276 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco57I | CTGAAG | 6 cut(s) | 35, 122, 3441, 3491, 3500, 3589 |
| Eco72I | CACGTG | 1 cut(s) | 3200 |
| Eco88I | CYCGRG | 3 cut(s) | 35, 2189, 3436 |
| Eco91I | GGTNACC | 1 cut(s) | 1534 |
| EcoO65I | GGTNACC | 1 cut(s) | 1534 |
| EcoRI | GAATTC | 1 cut(s) | 216 |
| EcoRII | CCWGG | 4 cut(s) | 80, 3066, 3307, 3384 |
| EcoRV | GATATC | 1 cut(s) | 2276 |
| EcoT14I | CCWWGG | 5 cut(s) | 452, 605, 1501, 2880, 3024 |
| EcoT22I | ATGCAT | 2 cut(s) | 2114, 2266 |
| EcoT38I | GRGCYC | 3 cut(s) | 35, 643, 3538 |
| ErhI | CCWWGG | 5 cut(s) | 452, 605, 1501, 2880, 3024 |
| Esp3I | CGTCTC | 1 cut(s) | 368 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1587, 1619, 2491, 2523 |
| FaqI | GGGAC | 1 cut(s) | 239 |
| FauNDI | CATATG | 2 cut(s) | 2376, 2582 |
| FbaI | TGATCA | 1 cut(s) | 3127 |
| FblI | GTMKAC | 1 cut(s) | 3105 |
| FokI | GGATG | 9 cut(s) | 169, 606, 980, 1157, 1361, 2921, 3083, 3437, 3490 |
| FriOI | GRGCYC | 3 cut(s) | 35, 643, 3538 |
| FspI | TGCGCA | 1 cut(s) | 705 |
| GlaI | GCGC | 9 cut(s) | 125, 302, 555, 581, 705, 842, 1080, 1115, 2187 |
| GsaI | CCCAGC | 1 cut(s) | 311 |
| GsuI | CTGGAG | 1 cut(s) | 657 |
| HaeII | RGCGCY | 2 cut(s) | 557, 844 |
| HaeIII | GGCC | 6 cut(s) | 239, 1128, 1821, 1877, 2471, 3226 |
| HapII | CCGG | 8 cut(s) | 23, 36, 439, 623, 1154, 1810, 2121, 2625 |
| HgaI | GACGC | 1 cut(s) | 1351 |
| HhaI | GCGC | 9 cut(s) | 126, 303, 556, 582, 706, 843, 1081, 1116, 2188 |
| Hin6I | GCGC | 9 cut(s) | 124, 301, 554, 580, 704, 841, 1079, 1114, 2186 |
| HinP1I | GCGC | 9 cut(s) | 124, 301, 554, 580, 704, 841, 1079, 1114, 2186 |
| HincII | GTYRAC | 1 cut(s) | 986 |
| HindII | GTYRAC | 1 cut(s) | 986 |
| HindIII | AAGCTT | 4 cut(s) | 207, 1601, 1895, 2213 |
| HpaII | CCGG | 8 cut(s) | 23, 36, 439, 623, 1154, 1810, 2121, 2625 |
| HphI | GGTGA | 4 cut(s) | 893, 1038, 1546, 3673 |
| Hpy166II | GTNNAC | 6 cut(s) | 406, 728, 986, 1172, 2288, 3106 |
| Hpy8I | GTNNAC | 6 cut(s) | 406, 728, 986, 1172, 2288, 3106 |
| Hpy99I | CGWCG | 3 cut(s) | 100, 250, 1345 |
| HpyAV | CCTTC | 7 cut(s) | 252, 1053, 1931, 2414, 2495, 3314, 3347 |
| HpyCH4IV | ACGT | 4 cut(s) | 343, 377, 919, 3199 |
| HpySE526I | ACGT | 4 cut(s) | 343, 377, 919, 3199 |
| HspAI | GCGC | 9 cut(s) | 124, 301, 554, 580, 704, 841, 1079, 1114, 2186 |
| Ksp22I | TGATCA | 1 cut(s) | 3127 |
| KspI | CCGCGG | 1 cut(s) | 159 |
| LmnI | GCTCC | 6 cut(s) | 30, 170, 201, 298, 638, 1981 |
| MaeII | ACGT | 4 cut(s) | 343, 377, 919, 3199 |
| MfeI | CAATTG | 2 cut(s) | 1967, 3188 |
| MflI | RGATCY | 4 cut(s) | 89, 692, 805, 3370 |
| MhlI | GDGCHC | 6 cut(s) | 35, 198, 643, 1163, 1649, 3538 |
| MlsI | TGGCCA | 1 cut(s) | 3226 |
| MluNI | TGGCCA | 1 cut(s) | 3226 |
| MlyI | GAGTC | 5 cut(s) | 84, 1283, 1571, 2133, 3428 |
| MmeI | TCCRAC | 4 cut(s) | 937, 2286, 3262, 3569 |
| Mox20I | TGGCCA | 1 cut(s) | 3226 |
| Mph1103I | ATGCAT | 2 cut(s) | 2114, 2266 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1884, 2742 |
| MscI | TGGCCA | 1 cut(s) | 3226 |
| MseI | TTAA | 9 cut(s) | 353, 699, 1319, 1449, 1685, 1839, 2211, 2534, 2768 |
| MslI | CAYNNNNRTG | 3 cut(s) | 755, 2517, 2625 |
| Msp20I | TGGCCA | 1 cut(s) | 3226 |
| MspA1I | CMGCKG | 6 cut(s) | 121, 158, 1076, 3209, 3544, 3627 |
| MspI | CCGG | 8 cut(s) | 23, 36, 439, 623, 1154, 1810, 2121, 2625 |
| MspR9I | CCNGG | 6 cut(s) | 36, 37, 82, 3068, 3309, 3386 |
| MunI | CAATTG | 2 cut(s) | 1967, 3188 |
| Mva1269I | GAATGC | 3 cut(s) | 425, 1294, 1867 |
| MvaI | CCWGG | 4 cut(s) | 82, 3068, 3309, 3386 |
| MvnI | CGCG | 2 cut(s) | 158, 1081 |
| NciI | CCSGG | 2 cut(s) | 36, 37 |
| NcoI | CCATGG | 2 cut(s) | 452, 3024 |
| NdeI | CATATG | 2 cut(s) | 2376, 2582 |
| NheI | GCTAGC | 1 cut(s) | 161 |
| NlaIV | GGNNCC | 6 cut(s) | 32, 240, 640, 1942, 3302, 3313 |
| NmeAIII | GCCGAG | 1 cut(s) | 152 |
| NmuCI | GTSAC | 7 cut(s) | 456, 748, 1199, 1534, 2125, 2537, 2930 |
| NsbI | TGCGCA | 1 cut(s) | 705 |
| NsiI | ATGCAT | 2 cut(s) | 2114, 2266 |
| NspI | RCATGY | 7 cut(s) | 1390, 1470, 1909, 1921, 2605, 3173, 3514 |
| PaeI | GCATGC | 1 cut(s) | 2605 |
| PaeR7I | CTCGAG | 1 cut(s) | 3436 |
| PagI | TCATGA | 4 cut(s) | 2632, 2748, 2862, 3130 |
| PciI | ACATGT | 3 cut(s) | 1386, 1466, 1917 |
| PctI | GAATGC | 3 cut(s) | 425, 1294, 1867 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1884, 2742 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2715 |
| PfoI | TCCNGGA | 1 cut(s) | 3384 |
| PleI | GAGTC | 5 cut(s) | 83, 1282, 1571, 2132, 3428 |
| PmaCI | CACGTG | 1 cut(s) | 3200 |
| PmlI | CACGTG | 1 cut(s) | 3200 |
| PpsI | GAGTC | 5 cut(s) | 83, 1282, 1571, 2132, 3428 |
| Ppu21I | YACGTR | 2 cut(s) | 920, 3200 |
| PscI | ACATGT | 3 cut(s) | 1386, 1466, 1917 |
| PshAI | GACNNNNGTC | 2 cut(s) | 429, 2829 |
| Psp1406I | AACGTT | 1 cut(s) | 343 |
| Psp6I | CCWGG | 4 cut(s) | 80, 3066, 3307, 3384 |
| PspCI | CACGTG | 1 cut(s) | 3200 |
| PspEI | GGTNACC | 1 cut(s) | 1534 |
| PspFI | CCCAGC | 1 cut(s) | 307 |
| PspGI | CCWGG | 4 cut(s) | 80, 3066, 3307, 3384 |
| PspN4I | GGNNCC | 6 cut(s) | 32, 240, 640, 1942, 3302, 3313 |
| PspPI | GGNCC | 5 cut(s) | 238, 431, 1127, 1875, 2469 |
| PstI | CTGCAG | 6 cut(s) | 387, 1264, 1357, 2644, 3370, 3626 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1634, 3374, 3544 |
| PsuI | RGATCY | 4 cut(s) | 89, 692, 805, 3370 |
| PvuII | CAGCTG | 3 cut(s) | 3209, 3544, 3627 |
| RsaI | GTAC | 7 cut(s) | 359, 534, 1932, 1963, 2869, 3364, 3503 |
| RsaNI | GTAC | 7 cut(s) | 358, 533, 1931, 1962, 2868, 3363, 3502 |
| RseI | CAYNNNNRTG | 3 cut(s) | 755, 2517, 2625 |
| SacII | CCGCGG | 1 cut(s) | 159 |
| SaqAI | TTAA | 9 cut(s) | 353, 699, 1319, 1449, 1685, 1839, 2211, 2534, 2768 |
| Sau96I | GGNCC | 5 cut(s) | 238, 431, 1127, 1875, 2469 |
| ScaI | AGTACT | 1 cut(s) | 2869 |
| SchI | GAGTC | 5 cut(s) | 84, 1283, 1571, 2133, 3428 |
| ScrFI | CCNGG | 6 cut(s) | 36, 37, 82, 3068, 3309, 3386 |
| SduI | GDGCHC | 6 cut(s) | 35, 198, 643, 1163, 1649, 3538 |
| SfcI | CTRYAG | 8 cut(s) | 132, 383, 1204, 1260, 1353, 2640, 3366, 3622 |
| Sfr274I | CTCGAG | 1 cut(s) | 3436 |
| Sfr303I | CCGCGG | 1 cut(s) | 159 |
| SgrBI | CCGCGG | 1 cut(s) | 159 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SlaI | CTCGAG | 1 cut(s) | 3436 |
| SmaI | CCCGGG | 1 cut(s) | 37 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 755, 2517, 2625 |
| SmlI | CTYRAG | 8 cut(s) | 833, 1090, 1436, 1801, 2021, 2834, 2956, 3436 |
| SmoI | CTYRAG | 8 cut(s) | 833, 1090, 1436, 1801, 2021, 2834, 2956, 3436 |
| SphI | GCATGC | 1 cut(s) | 2605 |
| SspI | AATATT | 2 cut(s) | 517, 1690 |
| StyD4I | CCNGG | 6 cut(s) | 34, 35, 80, 3066, 3307, 3384 |
| StyI | CCWWGG | 5 cut(s) | 452, 605, 1501, 2880, 3024 |
| TaiI | ACGT | 4 cut(s) | 346, 380, 922, 3202 |
| TaqI | TCGA | 5 cut(s) | 44, 245, 1343, 3163, 3437 |
| TaqII | GACCGA | 1 cut(s) | 1553 |
| TatI | WGTACW | 2 cut(s) | 2867, 3362 |
| TauI | GCSGC | 6 cut(s) | 112, 121, 161, 239, 1076, 1186 |
| Tru1I | TTAA | 9 cut(s) | 353, 699, 1319, 1449, 1685, 1839, 2211, 2534, 2768 |
| Tru9I | TTAA | 9 cut(s) | 353, 699, 1319, 1449, 1685, 1839, 2211, 2534, 2768 |
| TseFI | GTSAC | 7 cut(s) | 456, 748, 1199, 1534, 2125, 2537, 2930 |
| Tsp45I | GTSAC | 7 cut(s) | 456, 748, 1199, 1534, 2125, 2537, 2930 |
| TspGWI | ACGGA | 2 cut(s) | 3065, 3269 |
| TspMI | CCCGGG | 1 cut(s) | 35 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2715 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| XapI | RAATTY | 6 cut(s) | 216, 2238, 2324, 2760, 3058, 3404 |
| XbaI | TCTAGA | 3 cut(s) | 212, 1313, 2270 |
| XceI | RCATGY | 7 cut(s) | 1390, 1470, 1909, 1921, 2605, 3173, 3514 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2792, 3392 |
| XhoI | CTCGAG | 1 cut(s) | 3436 |
| XmaI | CCCGGG | 1 cut(s) | 35 |
| XmaJI | CCTAGG | 1 cut(s) | 1501 |
| XmiI | GTMKAC | 1 cut(s) | 3105 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1884, 2742 |
| ZrmI | AGTACT | 1 cut(s) | 2869 |
| Zsp2I | ATGCAT | 2 cut(s) | 2114, 2266 |