Rorug01G0328600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
44738284 .. 44741510
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0328600.1

Sequence Viewer

Length: 1119 bp
ATGATGATGATGACTCAACACCCGGCGGCGCCGAGAGCCGAGTCGACTCACAATCGACTCTACGAGTTCGCTAAAGCCGCCCTCACCAAAATCTTCGTCCACCCCTACGCCTCGGTCTGTGAGTTGTACTGCGGCGGAGGAGGACTCGACGCCGAGAAGTGGGACGAGTTCCAAATCGGTCACTACATTGGAATTGATGTTTCGACGTCCGGAATAAGCCAGAGAAGAGAAGCGTGGGAGAGCCAGAGGAAGAGTTACACTGCTGACTTCTTTGAGCTCGACCCCTGCATGGAAGATATAGAGCCACATCTGAATGAGGACACCATTCTGGCTGATTTAGTTTGCTGCTTGCAGAATTTGCAGCTGTGTTTCCAAACTGAAGAGAAAGCAAGGAGGCTCTTGTTAAATGTGTCGTCTTTACTGAAGCCGGGGGGTTATTTTTTTGGTATTACTCCTGACTCATCTACAATATGGGCAAAGTACCAGAAGAATGTAGAAGCATACCACAACAGAAGTGCTGGCATGAAACCAAACATTGTCCCCAACTGCATTAGATCAGAGAACTATGTGATCACTTTTGAAATTGAGGAAGAGAAGTTCCCTTTATTCGGAAAGAAGTACCTGCTAAAATTGGCTAATGATCTCCCCCCTGAAACCCATTGCTTGGTTCATTTCCCTAGCTTCATTAGGTTAGCCAGAGAAGCTGGTCTTGAGTATGTGGAGATTCAAAATCTAACTGAATTTTATGATGACAACAGAGCACAGTTTGCAGGCATGCTAATGAACTATGGTCCAAACCTTGCGGATCAGAGAGGCAGACTTCTTCCTCGATCATATGATGTGTTAGGTTTGTATACCACATTTATATTTCAAAAGCCTGACCCTGATATTGCTCCTCCACCTATGACACCGGTGCAGGATGCACCATACATTATTGATGAGAAAGAGTGGCAAGGAACCCTCTGGAGAGATGATGAAAAGAGTGCACCTGTAGAGCCGCCTCCTCTTCCCGGCCTAGGGAAGATCAGCGAGCAAAAAGGGATTTTGGGTCCTGGCCCTGCTGAGTTGCGTTTTTCTGAGCCACTTGACCTGGTGGTTGTTGCAAGCAAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

42.19

Weight (kDa)

5.07

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mRNA_G-N7_MeTrfase PF03291 38 - 292 3.2e-34 mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31 PF13847 38 - 174 4.5e-06 Methyltransferase domain
Methyltransf_12 PF08242 44 - 147 7.7e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 664
AccI GTMKAC 2 cut(s) 44, 854
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 6 cut(s) 26, 78, 132, 135, 803, 998
AclWI GGATC 1 cut(s) 813
AcsI RAATTY 2 cut(s) 355, 740
AcuI CTGAAG 2 cut(s) 399, 443
AcyI GRCGYC 3 cut(s) 29, 150, 206
AfaI GTAC 3 cut(s) 128, 482, 620
AfiI CCNNNNNNNGG 7 cut(s) 159, 289, 608, 664, 1010, 1016, 1017
AgeI ACCGGT 1 cut(s) 910
AgsI TTSAA 3 cut(s) 581, 728, 872
AjnI CCWGG 2 cut(s) 1051, 1089
AloI GAACNNNNNNTCC 2 cut(s) 581, 613
AluBI AGCT 4 cut(s) 277, 364, 681, 704
AluI AGCT 4 cut(s) 277, 364, 681, 704
Alw21I GWGCWC 3 cut(s) 279, 763, 988
Alw44I GTGCAC 1 cut(s) 984
AlwI GGATC 1 cut(s) 813
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 2 cut(s) 1012, 1054
ApaLI GTGCAC 1 cut(s) 984
ApeKI GCWGC 2 cut(s) 345, 361
ApoI RAATTY 2 cut(s) 355, 740
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AsiGI ACCGGT 1 cut(s) 910
AspA2I CCTAGG 1 cut(s) 1015
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 791, 1049, 1055
AsuC2I CCSGG 3 cut(s) 23, 429, 1011
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 791, 1049
AvrII CCTAGG 1 cut(s) 1015
BaeGI GKGCMC 1 cut(s) 988
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 3 cut(s) 279, 763, 988
BbvI GCAGC 2 cut(s) 332, 373
BciT130I CCWGG 2 cut(s) 1053, 1091
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 3 cut(s) 23, 429, 1011
BfaI CTAG 2 cut(s) 678, 1016
BfmI CTRYAG 1 cut(s) 990
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 630
BisI GCNGC 6 cut(s) 27, 78, 133, 346, 362, 998
BlnI CCTAGG 1 cut(s) 1015
BlsI GCNGC 6 cut(s) 28, 79, 134, 347, 363, 999
Bme1390I CCNGG 5 cut(s) 23, 429, 1011, 1053, 1091
Bme18I GGWCC 2 cut(s) 791, 1049
BmgT120I GGNCC 3 cut(s) 791, 1049, 1055
BmiI GGNNCC 3 cut(s) 30, 958, 1050
BmrFI CCNGG 5 cut(s) 23, 429, 1011, 1053, 1091
BmsI GCATC 1 cut(s) 910
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 1 cut(s) 985
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 3 cut(s) 23, 429, 1011
BsaHI GRCGYC 3 cut(s) 29, 150, 206
BsaJI CCNNGG 3 cut(s) 111, 428, 1015
BsaWI WCCGGW 2 cut(s) 209, 910
Bsc4I CCNNNNNNNGG 7 cut(s) 159, 289, 608, 664, 1010, 1016, 1017
Bse118I RCCGGY 1 cut(s) 910
Bse3DI GCAATG 1 cut(s) 658
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 2 cut(s) 1053, 1091
BseDI CCNNGG 3 cut(s) 111, 428, 1015
BseGI GGATG 1 cut(s) 925
BseLI CCNNNNNNNGG 7 cut(s) 159, 289, 608, 664, 1010, 1016, 1017
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 2 cut(s) 1053, 1068
BseRI GAGGAG 3 cut(s) 153, 885, 993
BseSI GKGCMC 1 cut(s) 988
BseXI GCAGC 2 cut(s) 332, 373
BsgI GTGCAG 1 cut(s) 935
BshFI GGCC 2 cut(s) 1014, 1056
BshNI GGYRCC 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 910
BsiHKAI GWGCWC 3 cut(s) 279, 763, 988
BsiSI CCGG 5 cut(s) 23, 210, 428, 911, 1011
BslFI GGGAC 2 cut(s) 176, 524
BslI CCNNNNNNNGG 7 cut(s) 159, 289, 608, 664, 1010, 1016, 1017
BsmFI GGGAC 2 cut(s) 176, 524
BsnI GGCC 2 cut(s) 1014, 1056
Bsp1286I GDGCHC 3 cut(s) 279, 763, 988
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
BspACI CCGC 6 cut(s) 26, 78, 132, 135, 803, 998
BspANI GGCC 2 cut(s) 1014, 1056
BspCNI CTCAG 2 cut(s) 1054, 1069
BspEI TCCGGA 1 cut(s) 209
BspLI GGNNCC 3 cut(s) 30, 958, 1050
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 1 cut(s) 813
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 910
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 3 cut(s) 111, 428, 1015
BssMI GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
BssNAI GTATAC 1 cut(s) 855
BssNI GRCGYC 3 cut(s) 29, 150, 206
BssT1I CCWWGG 1 cut(s) 1015
Bst1107I GTATAC 1 cut(s) 855
Bst2UI CCWGG 2 cut(s) 1053, 1091
Bst4CI ACNGT 1 cut(s) 765
Bst6I CTCTTC 5 cut(s) 220, 245, 375, 585, 1011
BstACI GRCGYC 3 cut(s) 29, 150, 206
BstAPI GCANNNNNTGC 2 cut(s) 358, 767
BstC8I GCNNGC 6 cut(s) 350, 520, 772, 776, 1031, 1105
BstDEI CTNAG 2 cut(s) 1062, 1077
BstF5I GGATG 1 cut(s) 925
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 6 cut(s) 557, 573, 643, 808, 833, 1026
BstMBI GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
BstMWI GCNNNNNNNGC 5 cut(s) 35, 77, 358, 701, 767
BstNI CCWGG 2 cut(s) 1053, 1091
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 5 cut(s) 21, 427, 1009, 1051, 1089
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 988
BstV1I GCAGC 2 cut(s) 332, 373
BstZ17I GTATAC 1 cut(s) 855
BsuRI GGCC 2 cut(s) 1014, 1056
BtsCI GGATG 1 cut(s) 925
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 6 cut(s) 350, 520, 772, 776, 1031, 1105
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 910
Cfr13I GGNCC 3 cut(s) 791, 1049, 1055
CseI GACGC 1 cut(s) 158
CsiI ACCWGGT 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 127, 481, 619
CspAI ACCGGT 1 cut(s) 910
CviAII CATG 3 cut(s) 289, 523, 775
CviQI GTAC 3 cut(s) 127, 481, 619
DdeI CTNAG 2 cut(s) 1062, 1077
DinI GGCGCC 1 cut(s) 30
DpnI GATC 6 cut(s) 556, 572, 642, 807, 832, 1025
DpnII GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
Eam1104I CTCTTC 5 cut(s) 220, 245, 375, 585, 1011
EarI CTCTTC 5 cut(s) 220, 245, 375, 585, 1011
EciI GGCGGA 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 1015
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 791, 1049
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 399, 443
EcoICRI GAGCTC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 1049
EcoRII CCWGG 2 cut(s) 1051, 1089
EcoT14I CCWWGG 1 cut(s) 1015
EcoT38I GRGCYC 1 cut(s) 279
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 1015
FaeI CATG 3 cut(s) 292, 526, 778
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FaqI GGGAC 2 cut(s) 176, 524
FatI CATG 3 cut(s) 288, 522, 774
FauNDI CATATG 1 cut(s) 835
FbaI TGATCA 1 cut(s) 570
FblI GTMKAC 2 cut(s) 44, 854
Fnu4HI GCNGC 6 cut(s) 27, 78, 133, 346, 362, 998
FokI GGATG 1 cut(s) 932
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 6 cut(s) 27, 78, 133, 346, 362, 998
FspBI CTAG 2 cut(s) 678, 1016
GlaI GCGC 1 cut(s) 30
GluI GCNGC 6 cut(s) 27, 78, 133, 346, 362, 998
GsuI CTGGAG 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 2 cut(s) 1014, 1056
HapII CCGG 5 cut(s) 23, 210, 428, 911, 1011
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 3 cut(s) 29, 150, 206
Hin1II CATG 3 cut(s) 292, 526, 778
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 7 cut(s) 13, 41, 46, 57, 144, 458, 724
HpaII CCGG 5 cut(s) 23, 210, 428, 911, 1011
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 4 cut(s) 45, 100, 855, 986
Hpy188I TCNGA 5 cut(s) 312, 559, 611, 810, 1078
Hpy188III TCNNGA 4 cut(s) 210, 455, 710, 964
Hpy8I GTNNAC 4 cut(s) 45, 100, 855, 986
Hpy99I CGWCG 2 cut(s) 152, 208
HpyCH4III ACNGT 1 cut(s) 765
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 9 cut(s) 288, 352, 361, 549, 770, 916, 923, 986, 1103
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 77, 358, 701, 767
HpyF3I CTNAG 2 cut(s) 1062, 1077
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 3 cut(s) 29, 150, 206
Hsp92II CATG 3 cut(s) 292, 526, 778
HspAI GCGC 1 cut(s) 29
KasI GGCGCC 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
LmnI GCTCC 1 cut(s) 898
Lsp1109I GCAGC 2 cut(s) 332, 373
LweI GCATC 1 cut(s) 910
MabI ACCWGGT 1 cut(s) 1089
MaeI CTAG 2 cut(s) 678, 1016
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 179, 254
MalI GATC 6 cut(s) 556, 572, 642, 807, 832, 1025
MboI GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
MhlI GDGCHC 3 cut(s) 279, 763, 988
MluCI AATT 6 cut(s) 192, 355, 582, 629, 740, 1114
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 6 cut(s) 7, 40, 50, 51, 138, 452
MroI TCCGGA 1 cut(s) 209
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 2 cut(s) 312, 779
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 5 cut(s) 23, 210, 428, 911, 1011
MspR9I CCNGG 5 cut(s) 23, 429, 1011, 1053, 1091
MvaI CCWGG 2 cut(s) 1053, 1091
MwoI GCNNNNNNNGC 5 cut(s) 35, 77, 358, 701, 767
NarI GGCGCC 1 cut(s) 29
NciI CCSGG 3 cut(s) 23, 429, 1011
NdeI CATATG 1 cut(s) 835
NdeII GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
NlaIII CATG 3 cut(s) 292, 526, 778
NlaIV GGNNCC 3 cut(s) 30, 958, 1050
NmeAIII GCCGAG 3 cut(s) 57, 64, 178
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 778
PaeI GCATGC 1 cut(s) 778
PfeI GAWTC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 664
PinAI ACCGGT 1 cut(s) 910
PkrI GCNGC 6 cut(s) 28, 79, 134, 347, 363, 999
PleI GAGTC 6 cut(s) 7, 40, 49, 51, 138, 452
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 6 cut(s) 7, 40, 49, 51, 138, 452
PpuMI RGGWCCY 1 cut(s) 1049
Psp124BI GAGCTC 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 1049
Psp6I CCWGG 2 cut(s) 1051, 1089
PspGI CCWGG 2 cut(s) 1051, 1089
PspN4I GGNNCC 3 cut(s) 30, 958, 1050
PspPI GGNCC 3 cut(s) 791, 1049, 1055
PspPPI RGGWCCY 1 cut(s) 1049
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 128, 482, 620
RsaNI GTAC 3 cut(s) 127, 481, 619
RseI CAYNNNNRTG 2 cut(s) 312, 779
SacI GAGCTC 1 cut(s) 279
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 6 cut(s) 27, 78, 133, 346, 362, 998
Sau3AI GATC 6 cut(s) 554, 570, 640, 805, 830, 1023
Sau96I GGNCC 3 cut(s) 791, 1049, 1055
SchI GAGTC 6 cut(s) 7, 40, 50, 51, 138, 452
ScrFI CCNGG 5 cut(s) 23, 429, 1011, 1053, 1091
SduI GDGCHC 3 cut(s) 279, 763, 988
SexAI ACCWGGT 1 cut(s) 1089
SfaNI GCATC 1 cut(s) 910
SfcI CTRYAG 1 cut(s) 990
SfoI GGCGCC 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 910
SinI GGWCC 2 cut(s) 791, 1049
SmiMI CAYNNNNRTG 2 cut(s) 312, 779
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SphI GCATGC 1 cut(s) 778
Sse9I AATT 6 cut(s) 192, 355, 582, 629, 740, 1114
SsiI CCGC 6 cut(s) 26, 78, 132, 135, 803, 998
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 2 cut(s) 678, 1016
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 5 cut(s) 21, 427, 1009, 1051, 1089
StyI CCWWGG 1 cut(s) 1015
TaaI ACNGT 1 cut(s) 765
TaiI ACGT 1 cut(s) 209
TaqI TCGA 6 cut(s) 44, 55, 147, 203, 279, 829
TaqII GACCGA 2 cut(s) 103, 167
TasI AATT 6 cut(s) 192, 355, 582, 629, 740, 1114
TatI WGTACW 1 cut(s) 126
TauI GCSGC 4 cut(s) 29, 80, 135, 1000
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 345, 361
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 5 cut(s) 539, 659, 673, 797, 990
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 664
VneI GTGCAC 1 cut(s) 984
VpaK11BI GGWCC 2 cut(s) 791, 1049
XapI RAATTY 2 cut(s) 355, 740
XceI RCATGY 1 cut(s) 778
XmaJI CCTAGG 1 cut(s) 1015
XmiI GTMKAC 2 cut(s) 44, 854
XspI CTAG 2 cut(s) 678, 1016
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.