Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005198

Physical Location & Seq

Genomic Coordinates Forward (+)

29598802 .. 29604966

Gene Structure 6165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1198100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGCTTCAAAACCCCATTGTTTGTTTTGTTTTCTGGTTTTTAGATGTTGTTGTTGATGATGTTTCTGTTTGTCAGAAGATGGACGGTCACGGTGAACTTGGTTTCGCTGAGAATTTCGACCCCGGGATCATCGGAAGGCTGAGGGATGATGAGTACGAGAGCAGGTCGGGGAGTGATAACTTTGAGGGCGCATCTGGGGATGATCAGGACGGCGGCGGCGGCGGCGACCAACCGCCGAGGAAGAAAAAGTACCATAGGCACACTCCTAACCAAATCCAAGAACTTGAAAACTTTTTCAAAGAGTGTCCTCATCCGGATGAGAAGCAAAGGTCGGAGCTCAGCCGTCGTCTCGGCTTAGAGACGAAGCAAGTCAAGTTCTGGTTTCAAAACAGAAGAACTCAGATGAAGACACAACTTGAACGCCACGAGAATATTATTCTCAGGCAAGAGAATGACAAGCTGAGAGCTGAGAATGGTGTGATAAAGGATGCTATGTCAAACCCGGTTTGCAACAATTGTGGTGGTCCGGCCATTCCTGGGCAAATATCGTTTGAGGAACACCAACTTAGGATTGAGAATGCTCGACTCAAGGATGAACTGAACCGCATATGTACTCTCACGAACAAGTTCTTGGGCAGGCCCATCTCCTCCTTGGGCAATGCATCCTCCGGTTTGGAACTTGGTGTTGGAAGAACTGGGATGGGTGGTATGAATGCTGTAGGCGCTGAGTTGCCGCTGGGGCTTGATTTAGGAGATGGGATTTCAAGCTCTTCCCCTATGATGCCTCTCGTTAAGACCTGTTCAGGCATGATGGGGAATGAAGTACCATTTGAGAGATCTATGTACATAGATCTTGCATTGGCAGCTATGGATGAATTGGTGAAGATGGCTCAGGTAGATAGCCCCTTGTGGATCAAAAGTTCAGATGGGACAGATATATTGAACCTTGAAGAGTATCGGGCATTTTCTTGCATTGGTATGAAACCTAGCAGCTTTGTAACTGAAGCCACTAGGGACACTTGTGTCATATTACTAAACAGCTTGGCTCTCGTTGAGACATTGATGGATGCGAATCGATGGGCGGAAATGTTTCAGTGTTTGGTTGCTCGAGCCTCCACTATTGATATGATATCCAACGGCATGGGTGGGACTAGAAATGGTGCTCTTCAAGTGATGCACGCTGAGCTTCAAATGCTATCCCCGTTGGTCCCTGTTCGTCCACTGAAGTTCCTCCGTTTCTGCAAGCAACATGCCGAGGGTGTTTGGGCCGTAGTTGATGTTTCTCTTGACATCAATCAAGAAGGTTCCAATACAAACCCGTTTTGGAACTGCCGGAGGCTTCCTTCCGGATGCATTGTGCAAGATATGCCTAGTAATTGCTCCAAGGTGACATGGATAGAACATACTGAATATGATGAGAATGTCGTCCACCACCTCTTCCGGGAATCACTGCGTTCGGGTATGGGCTTTGGTGCACACAGGTGGCTTGCCACTCTGCAAAGGCAATTTGAAAGCCTGGCATTCCTCATTTCGTCTGCCAACTCCAGTGAAGATCACTCAGGGATAGGTGTCAACGGTAAGAAAAGCATGCTAAAGCTTGCACAGCGTATGGTGGATAACTTCTGTGCTGGGATTTCTGCCTCGTCTGTGCGCAAGTGGGACAAACTTTGCTTTGAAAATGTTAGTGAAGATACGAGGGTTATGGCCCGGAAGAGTATGAATGACCCCGGCGAGCCACCAGGGATTGTGTTGAGTGTTGCAACAACTGTTTGGGTTCCGGTATCAAGGCATAGGGTGTTTGAGTTTTTGCGAGACGAACAGTTTAGGAAGGAATGGGACATTCTGTCCAGCAATGTTCCAATGCAACGCATTGTCCAAATTGCGAAGGGCCAAGGAGGTGCCAATAGTGTTTCTCTTCTTCGTGCTAACGAGACAAATGCCAACGACAGTAACATGCTGATATTGCAAGAGACGTGGACTGACCCTTCGGGCTCACTTGTAGTGTATGCACCAGTTGACACTGAATCAATAAATGTCGTGATGCGCGGTGGAGATTCTGCTTATGTAGCTCTTCTGCCATCAGGGTTTGCAATCCTTCCCGGTGGCCCACCTGGCTATGAAGTGGTCAAATCTGAAGGCAATGGCAGTGATGGCAGCAACGGATGTTTGCTGACTGTTGCATTCCAAATTCTGGTTAGCAGCCTTCCGACGGCCAAAATCAACATGGAGTCGGTTGAGACAGTCAGCACTCTCATATCTTGCACCATTCAGAAGATAAAATCGTCTCTTCAAGCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

767

Amino Acids

84.39

Weight (kDa)

5.4

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	81 - 136	4.7e-20	Homeodomain
START	PF01852	285 - 503	1.4e-42	START domain
PDF2_C	PF25797	525 - 764	1.4e-94	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005198)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130
malus_domestica	MD01G1198100.v1.1 MD07G1266200.v1.1
prunus_persica	Prupe.2G291400_v2.0.a1
pyrus_communis	pycom01g20820 pycom07g24390
rosa_chinensis	RchiOBHm_Chr1g0376881
rosa_laevigata	RLG00000026562
rosa_multiflora	Rmu_co8045660.1_g000001 Rmu_sc0002113.1_g000002 Rmu_ssc0000125.1_g000012
rosa_roxburghii	Rroxscaffold_4G00281650
rosa_rugosa	Rorug01G0399300 Rorug01G0399400 Rorug01G0399500 Rorug01G0399600 Rorug01G0399600
rosa_samantha	Rh1AG416600 Rh1BG375800 Rh1CG389600 Rh1DG406400
rosa_wichuraiana	Rw1G036550 Rw3G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1022
Acc16I	TGCGCA	1 cut(s)	1652
Acc36I	ACCTGC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	1898
AccB7I	CCANNNNNTGG	1 cut(s)	2191
AccII	CGCG	1 cut(s)	2046
AccIII	TCCGGA	2 cut(s)	313, 1346
AciI	CCGC	9 cut(s)	213, 216, 219, 222, 233, 604, 734, 1082, 2046
AclWI	GGATC	2 cut(s)	134, 920
AcoI	YGGCCR	2 cut(s)	528, 2211
AcsI	RAATTY	2 cut(s)	112, 2187
AcuI	CTGAAG	3 cut(s)	1023, 1244, 2154
AfaI	GTAC	5 cut(s)	155, 251, 613, 825, 845
AfiI	CCNNNNNNNGG	4 cut(s)	537, 1441, 2191, 2209
AhdI	GACNNNNNGTC	1 cut(s)	1843
AjiI	CACGTC	1 cut(s)	1974
AjnI	CCWGG	4 cut(s)	535, 1515, 1738, 2110
AjuI	GAANNNNNNNTTGG	4 cut(s)	614, 646, 669, 701
AleI	CACNNNNGTG	1 cut(s)	1480
AloI	GAACNNNNNNTCC	2 cut(s)	904, 936
Alw21I	GWGCWC	3 cut(s)	339, 1165, 1477
Alw26I	GTCTC	8 cut(s)	353, 353, 1049, 1806, 1925, 1964, 2231, 2289
Alw44I	GTGCAC	1 cut(s)	1473
AlwI	GGATC	2 cut(s)	134, 920
Ama87I	CYCGRG	2 cut(s)	122, 1107
Aor13HI	TCCGGA	2 cut(s)	313, 1346
AoxI	GGCC	7 cut(s)	528, 638, 1266, 1704, 1888, 2104, 2211
ApaLI	GTGCAC	1 cut(s)	1473
ApeKI	GCWGC	5 cut(s)	863, 990, 2154, 2199, 2294
ApoI	RAATTY	2 cut(s)	112, 2187
ArsI	GACNNNNNNTTYG	2 cut(s)	1969, 2001
Asp700I	GAANNNNTTC	2 cut(s)	626, 1089
AspLEI	GCGC	4 cut(s)	191, 725, 1653, 2046
AspS9I	GGNCC	7 cut(s)	524, 639, 1207, 1266, 1705, 1888, 2105
AsuC2I	CCSGG	7 cut(s)	123, 124, 503, 1442, 1708, 1728, 2100
AsuHPI	GGTGA	3 cut(s)	104, 892, 1399
AvaI	CYCGRG	2 cut(s)	122, 1107
AvaII	GGWCC	2 cut(s)	524, 1207
BaeGI	GKGCMC	1 cut(s)	1477
BaeI	ACNNNNGTAYC	2 cut(s)	1683, 1716
BanI	GGYRCC	1 cut(s)	1898
BanII	GRGCYC	2 cut(s)	339, 1994
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BauI	CACGAG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	3 cut(s)	339, 1165, 1477
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	875, 1002, 2166, 2211
BceAI	ACGGC	5 cut(s)	226, 327, 1153, 1253, 2226
BcgI	CGANNNNNNTGC	2 cut(s)	1919, 1953
BciT130I	CCWGG	4 cut(s)	537, 1517, 1740, 2112
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	7 cut(s)	123, 124, 503, 1442, 1708, 1728, 2100
BcoDI	GTCTC	8 cut(s)	353, 353, 1049, 1806, 1925, 1964, 2231, 2289
BfaI	CTAG	4 cut(s)	987, 1011, 1152, 1371
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	153
BglI	GCCNNNNNGGC	2 cut(s)	739, 2112
BglII	AGATCT	2 cut(s)	836, 850
BlpI	GCTNAGC	2 cut(s)	338, 1182
Bme18I	GGWCC	2 cut(s)	524, 1207
BmeRI	GACNNNNNGTC	1 cut(s)	1843
BmeT110I	CYCGRG	2 cut(s)	122, 1107
BmgBI	CACGTC	1 cut(s)	1974
BmgT120I	GGNCC	7 cut(s)	524, 639, 1207, 1266, 1705, 1888, 2105
BmiI	GGNNCC	4 cut(s)	1209, 1306, 1776, 1900
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	8 cut(s)	200, 478, 671, 771, 1057, 1164, 1340, 2031
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	1528
Bpu10I	CCTNAGC	2 cut(s)	140, 891
Bpu1102I	GCTNAGC	2 cut(s)	338, 1182
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	7 cut(s)	123, 124, 503, 1442, 1708, 1728, 2100
Bsa29I	ATCGAT	1 cut(s)	1075
BsaBI	GATNNNNATC	1 cut(s)	1071
BsaWI	WCCGGW	4 cut(s)	313, 668, 1346, 1777
Bsc4I	CCNNNNNNNGG	4 cut(s)	537, 1441, 2191, 2209
Bse1I	ACTGG	3 cut(s)	700, 1545, 2012
Bse3DI	GCAATG	3 cut(s)	664, 1858, 2146
Bse8I	GATNNNNATC	1 cut(s)	1071
BseAI	TCCGGA	2 cut(s)	313, 1346
BseBI	CCWGG	4 cut(s)	537, 1517, 1740, 2112
BseCI	ATCGAT	1 cut(s)	1075
BseJI	GATNNNNATC	1 cut(s)	1071
BseLI	CCNNNNNNNGG	4 cut(s)	537, 1441, 2191, 2209
BseMI	GCAATG	3 cut(s)	664, 1858, 2146
BseNI	ACTGG	3 cut(s)	700, 1545, 2012
BseRI	GAGGAG	1 cut(s)	637
BseSI	GKGCMC	1 cut(s)	1477
BseXI	GCAGC	4 cut(s)	875, 1002, 2166, 2211
BseYI	CCCAGC	2 cut(s)	736, 1628
Bsh1236I	CGCG	1 cut(s)	2046
BshFI	GGCC	7 cut(s)	530, 640, 1268, 1706, 1890, 2106, 2213
BshNI	GGYRCC	1 cut(s)	1898
BshVI	ATCGAT	1 cut(s)	1075
BsiHKAI	GWGCWC	3 cut(s)	339, 1165, 1477
BsiHKCI	CYCGRG	2 cut(s)	122, 1107
BslFI	GGGAC	6 cut(s)	943, 1028, 1162, 1193, 1673, 1850
BslI	CCNNNNNNNGG	4 cut(s)	537, 1441, 2191, 2209
BsmAI	GTCTC	8 cut(s)	353, 353, 1049, 1806, 1925, 1964, 2231, 2289
BsmBI	CGTCTC	5 cut(s)	353, 353, 1806, 1964, 2289
BsmFI	GGGAC	6 cut(s)	943, 1028, 1162, 1193, 1673, 1850
BsmI	GAATGC	4 cut(s)	583, 718, 1520, 2180
BsnI	GGCC	7 cut(s)	530, 640, 1268, 1706, 1890, 2106, 2213
BsoBI	CYCGRG	2 cut(s)	122, 1107
Bsp1286I	GDGCHC	4 cut(s)	339, 1165, 1477, 1994
Bsp13I	TCCGGA	2 cut(s)	313, 1346
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
Bsp1720I	GCTNAGC	2 cut(s)	338, 1182
BspACI	CCGC	9 cut(s)	213, 216, 219, 222, 233, 604, 734, 1082, 2046
BspANI	GGCC	7 cut(s)	530, 640, 1268, 1706, 1890, 2106, 2213
BspDI	ATCGAT	1 cut(s)	1075
BspEI	TCCGGA	2 cut(s)	313, 1346
BspFNI	CGCG	1 cut(s)	2046
BspLI	GGNNCC	4 cut(s)	1209, 1306, 1776, 1900
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	134, 920
BspQI	GCTCTTC	3 cut(s)	775, 1170, 2076
BspT107I	GGYRCC	1 cut(s)	1898
BsrDI	GCAATG	3 cut(s)	664, 1858, 2146
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	700, 1545, 2012
BssMI	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
BssSI	CACGAG	1 cut(s)	425
BssT1I	CCWWGG	3 cut(s)	651, 1383, 1891
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	4 cut(s)	537, 1517, 1740, 2112
Bst4CI	ACNGT	8 cut(s)	86, 92, 1577, 1768, 1821, 1949, 2176, 2242
Bst6I	CTCTTC	8 cut(s)	775, 945, 1170, 1442, 1706, 1920, 2076, 2292
BstAPI	GCANNNNNTGC	1 cut(s)	1366
BstAUI	TGTACA	1 cut(s)	843
BstC8I	GCNNGC	7 cut(s)	638, 1179, 1244, 1488, 1589, 1599, 1733
BstFNI	CGCG	1 cut(s)	2046
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	4 cut(s)	191, 725, 1653, 2046
BstKTI	GATC	6 cut(s)	129, 205, 839, 853, 915, 1555
BstMAI	GTCTC	8 cut(s)	353, 353, 1049, 1806, 1925, 1964, 2231, 2289
BstMBI	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
BstNI	CCWGG	4 cut(s)	537, 1517, 1740, 2112
BstNSI	RCATGY	3 cut(s)	1253, 1591, 1957
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	1477
BstUI	CGCG	1 cut(s)	2046
BstV1I	GCAGC	4 cut(s)	875, 1002, 2166, 2211
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	2 cut(s)	836, 850
BstXI	CCANNNNNNTGG	1 cut(s)	1141
BstYI	RGATCY	2 cut(s)	836, 850
Bsu15I	ATCGAT	1 cut(s)	1075
BsuRI	GGCC	7 cut(s)	530, 640, 1268, 1706, 1890, 2106, 2213
BsuTUI	ATCGAT	1 cut(s)	1075
BtrI	CACGTC	1 cut(s)	1974
BtsI	GCAGTG	2 cut(s)	1448, 2152
BtsIMutI	CAGTG	6 cut(s)	1100, 1220, 1448, 1552, 2019, 2152
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	7 cut(s)	638, 1179, 1244, 1488, 1589, 1599, 1733
CfoI	GCGC	4 cut(s)	191, 725, 1653, 2046
Cfr13I	GGNCC	7 cut(s)	524, 639, 1207, 1266, 1705, 1888, 2105
Cfr9I	CCCGGG	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	1075
Csp6I	GTAC	5 cut(s)	154, 250, 612, 824, 844
CspCI	CAANNNNNGTGG	6 cut(s)	499, 502, 534, 537, 1955, 1990
CviAII	CATG	7 cut(s)	808, 1141, 1250, 1392, 1588, 1954, 2224
CviQI	GTAC	5 cut(s)	154, 250, 612, 824, 844
DpnI	GATC	6 cut(s)	128, 204, 838, 852, 914, 1554
DpnII	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
DrdI	GACNNNNNNGTC	1 cut(s)	1022
DriI	GACNNNNNGTC	1 cut(s)	1843
DseDI	GACNNNNNNGTC	1 cut(s)	1022
EaeI	YGGCCR	2 cut(s)	528, 2211
Eam1104I	CTCTTC	8 cut(s)	775, 945, 1170, 1442, 1706, 1920, 2076, 2292
Eam1105I	GACNNNNNGTC	1 cut(s)	1843
EarI	CTCTTC	8 cut(s)	775, 945, 1170, 1442, 1706, 1920, 2076, 2292
EciI	GGCGGA	1 cut(s)	1097
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	3 cut(s)	651, 1383, 1891
Eco24I	GRGCYC	2 cut(s)	339, 1994
Eco32I	GATATC	1 cut(s)	1131
Eco47I	GGWCC	2 cut(s)	524, 1207
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	3 cut(s)	1023, 1244, 2154
Eco88I	CYCGRG	2 cut(s)	122, 1107
EcoICRI	GAGCTC	1 cut(s)	337
EcoRII	CCWGG	4 cut(s)	535, 1515, 1738, 2110
EcoRV	GATATC	1 cut(s)	1131
EcoT14I	CCWWGG	3 cut(s)	651, 1383, 1891
EcoT22I	ATGCAT	2 cut(s)	664, 1355
EcoT38I	GRGCYC	2 cut(s)	339, 1994
ErhI	CCWWGG	3 cut(s)	651, 1383, 1891
Esp3I	CGTCTC	5 cut(s)	353, 353, 1806, 1964, 2289
FaeI	CATG	7 cut(s)	811, 1144, 1253, 1395, 1591, 1957, 2227
FaqI	GGGAC	6 cut(s)	943, 1028, 1162, 1193, 1673, 1850
FatI	CATG	7 cut(s)	807, 1140, 1249, 1391, 1587, 1953, 2223
FauNDI	CATATG	1 cut(s)	608
FbaI	TGATCA	1 cut(s)	202
FriOI	GRGCYC	2 cut(s)	339, 1994
FspBI	CTAG	4 cut(s)	987, 1011, 1152, 1371
FspI	TGCGCA	1 cut(s)	1652
GlaI	GCGC	4 cut(s)	190, 724, 1652, 2045
GsaI	CCCAGC	2 cut(s)	740, 1632
GsuI	CTGGAG	1 cut(s)	1528
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	7 cut(s)	530, 640, 1268, 1706, 1890, 2106, 2213
HhaI	GCGC	4 cut(s)	191, 725, 1653, 2046
Hin1II	CATG	7 cut(s)	811, 1144, 1253, 1395, 1591, 1957, 2227
Hin6I	GCGC	4 cut(s)	189, 723, 1651, 2044
HinP1I	GCGC	4 cut(s)	189, 723, 1651, 2044
HincII	GTYRAC	2 cut(s)	1573, 2017
HindII	GTYRAC	2 cut(s)	1573, 2017
HindIII	AAGCTT	1 cut(s)	1595
HinfI	GANTC	6 cut(s)	585, 1072, 1445, 2024, 2054, 2228
HphI	GGTGA	3 cut(s)	104, 892, 1399
Hpy166II	GTNNAC	7 cut(s)	95, 1220, 1429, 1475, 1573, 1977, 2017
Hpy188I	TCNGA	8 cut(s)	75, 134, 334, 402, 925, 2134, 2208, 2271
Hpy188III	TCNNGA	7 cut(s)	206, 314, 619, 1286, 1298, 1347, 2038
Hpy8I	GTNNAC	7 cut(s)	95, 1220, 1429, 1475, 1573, 1977, 2017
Hpy99I	CGWCG	2 cut(s)	348, 2212
HpyAV	CCTTC	9 cut(s)	129, 1295, 1353, 1822, 1879, 1995, 2105, 2129, 2213
HpyCH4III	ACNGT	8 cut(s)	86, 92, 1577, 1768, 1821, 1949, 2176, 2242
HpyCH4IV	ACGT	1 cut(s)	1973
HpySE526I	ACGT	1 cut(s)	1973
Hsp92II	CATG	7 cut(s)	811, 1144, 1253, 1395, 1591, 1957, 2227
HspAI	GCGC	4 cut(s)	189, 723, 1651, 2044
Kpn2I	TCCGGA	2 cut(s)	313, 1346
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
LguI	GCTCTTC	3 cut(s)	775, 1170, 2076
LmnI	GCTCC	2 cut(s)	334, 1385
Lsp1109I	GCAGC	4 cut(s)	875, 1002, 2166, 2211
LweI	GCATC	8 cut(s)	200, 478, 671, 771, 1057, 1164, 1340, 2031
MaeI	CTAG	4 cut(s)	987, 1011, 1152, 1371
MaeII	ACGT	1 cut(s)	1973
MaeIII	GTNAC	4 cut(s)	86, 997, 1387, 1949
MalI	GATC	6 cut(s)	128, 204, 838, 852, 914, 1554
MboI	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
MfeI	CAATTG	1 cut(s)	514
MflI	RGATCY	2 cut(s)	836, 850
MhlI	GDGCHC	4 cut(s)	339, 1165, 1477, 1994
MluCI	AATT	7 cut(s)	112, 514, 875, 1375, 1505, 1878, 2187
MlyI	GAGTC	2 cut(s)	579, 2237
MmeI	TCCRAC	4 cut(s)	312, 667, 1158, 2231
Mph1103I	ATGCAT	2 cut(s)	664, 1355
MroI	TCCGGA	2 cut(s)	313, 1346
MroXI	GAANNNNTTC	2 cut(s)	626, 1089
MseI	TTAA	1 cut(s)	792
MslI	CAYNNNNRTG	3 cut(s)	315, 977, 1480
MspA1I	CMGCKG	1 cut(s)	736
MunI	CAATTG	1 cut(s)	514
Mva1269I	GAATGC	4 cut(s)	583, 718, 1520, 2180
MvaI	CCWGG	4 cut(s)	537, 1517, 1740, 2112
MvnI	CGCG	1 cut(s)	2046
NciI	CCSGG	7 cut(s)	123, 124, 503, 1442, 1708, 1728, 2100
NdeI	CATATG	1 cut(s)	608
NdeII	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
NlaIII	CATG	7 cut(s)	811, 1144, 1253, 1395, 1591, 1957, 2227
NlaIV	GGNNCC	4 cut(s)	1209, 1306, 1776, 1900
NmeAIII	GCCGAG	3 cut(s)	261, 330, 1279
NmuCI	GTSAC	2 cut(s)	86, 1387
NsbI	TGCGCA	1 cut(s)	1652
NsiI	ATGCAT	2 cut(s)	664, 1355
NspI	RCATGY	3 cut(s)	1253, 1591, 1957
OliI	CACNNNNGTG	1 cut(s)	1480
PaeI	GCATGC	1 cut(s)	1591
PaeR7I	CTCGAG	1 cut(s)	1107
PciSI	GCTCTTC	3 cut(s)	775, 1170, 2076
PctI	GAATGC	4 cut(s)	583, 718, 1520, 2180
PdmI	GAANNNNTTC	2 cut(s)	626, 1089
PfeI	GAWTC	4 cut(s)	1072, 1445, 2024, 2054
PflMI	CCANNNNNTGG	1 cut(s)	2191
PfoI	TCCNGGA	1 cut(s)	1440
PleI	GAGTC	2 cut(s)	579, 2236
PpsI	GAGTC	2 cut(s)	579, 2236
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	4 cut(s)	535, 1515, 1738, 2110
PspFI	CCCAGC	2 cut(s)	736, 1628
PspGI	CCWGG	4 cut(s)	535, 1515, 1738, 2110
PspN4I	GGNNCC	4 cut(s)	1209, 1306, 1776, 1900
PspPI	GGNCC	7 cut(s)	524, 639, 1207, 1266, 1705, 1888, 2105
PspXI	VCTCGAGB	1 cut(s)	1107
PsuI	RGATCY	2 cut(s)	836, 850
RsaI	GTAC	5 cut(s)	155, 251, 613, 825, 845
RsaNI	GTAC	5 cut(s)	154, 250, 612, 824, 844
RseI	CAYNNNNRTG	3 cut(s)	315, 977, 1480
SacI	GAGCTC	1 cut(s)	339
SapI	GCTCTTC	3 cut(s)	775, 1170, 2076
SaqAI	TTAA	1 cut(s)	792
Sau3AI	GATC	6 cut(s)	126, 202, 836, 850, 912, 1552
Sau96I	GGNCC	7 cut(s)	524, 639, 1207, 1266, 1705, 1888, 2105
SchI	GAGTC	2 cut(s)	579, 2237
SduI	GDGCHC	4 cut(s)	339, 1165, 1477, 1994
SfaNI	GCATC	8 cut(s)	200, 478, 671, 771, 1057, 1164, 1340, 2031
SfcI	CTRYAG	1 cut(s)	717
Sfr274I	CTCGAG	1 cut(s)	1107
SinI	GGWCC	2 cut(s)	524, 1207
SlaI	CTCGAG	1 cut(s)	1107
SmaI	CCCGGG	1 cut(s)	124
SmiMI	CAYNNNNRTG	3 cut(s)	315, 977, 1480
SmlI	CTYRAG	2 cut(s)	587, 1107
SmoI	CTYRAG	2 cut(s)	587, 1107
SphI	GCATGC	1 cut(s)	1591
Sse9I	AATT	7 cut(s)	112, 514, 875, 1375, 1505, 1878, 2187
SsiI	CCGC	9 cut(s)	213, 216, 219, 222, 233, 604, 734, 1082, 2046
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	4 cut(s)	987, 1011, 1152, 1371
SstI	GAGCTC	1 cut(s)	339
StyI	CCWWGG	3 cut(s)	651, 1383, 1891
TaaI	ACNGT	8 cut(s)	86, 92, 1577, 1768, 1821, 1949, 2176, 2242
TaiI	ACGT	1 cut(s)	1976
TaqI	TCGA	4 cut(s)	117, 583, 1075, 1108
TasI	AATT	7 cut(s)	112, 514, 875, 1375, 1505, 1878, 2187
TatI	WGTACW	2 cut(s)	611, 843
TauI	GCSGC	5 cut(s)	216, 219, 222, 225, 736
TfiI	GAWTC	4 cut(s)	1072, 1445, 2024, 2054
Tru1I	TTAA	1 cut(s)	792
Tru9I	TTAA	1 cut(s)	792
TscAI	CASTG	6 cut(s)	1100, 1227, 1455, 1552, 2026, 2152
TseFI	GTSAC	2 cut(s)	86, 1387
TseI	GCWGC	5 cut(s)	863, 990, 2154, 2199, 2294
Tsp45I	GTSAC	2 cut(s)	86, 1387
TspDTI	ATGAA	8 cut(s)	419, 609, 725, 834, 888, 995, 1733, 2133
TspGWI	ACGGA	2 cut(s)	1223, 2175
TspMI	CCCGGG	1 cut(s)	122
TspRI	CASTG	6 cut(s)	1100, 1227, 1455, 1552, 2026, 2152
Van91I	CCANNNNNTGG	1 cut(s)	2191
VneI	GTGCAC	1 cut(s)	1473
VpaK11BI	GGWCC	2 cut(s)	524, 1207
XapI	RAATTY	2 cut(s)	112, 2187
XceI	RCATGY	3 cut(s)	1253, 1591, 1957
XcmI	CCANNNNNNNNNTGG	2 cut(s)	649, 2221
XhoI	CTCGAG	1 cut(s)	1107
XmaI	CCCGGG	1 cut(s)	122
XmnI	GAANNNNTTC	2 cut(s)	626, 1089
XspI	CTAG	4 cut(s)	987, 1011, 1152, 1371
Zsp2I	ATGCAT	2 cut(s)	664, 1355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.