Rmu_sc0002113.1_g000002

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002113.1
Physical Location & Seq
Reverse (-)
10292 .. 12324
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002113.1_g000002.1.cds

Sequence Viewer

Length: 1590 bp
atgaattttggaggtttgatcagtaatagtggaggtgttgggggttcaagagttgtggctgagattgatccacacagcagtggtggtgccattgctcaaccacactttattcccaattcaatgcagacttcctctgccctctccctttcaatagtgcagaaaaacatggatgggcacaatgaacttgacctgattgctgagagttttgaccccgggattattgggaggttgagggaagaggagtttgaccagagccggtcaggcagtgaccattttgatggggcatccggtgatgatcaaggccctgtcgacgaggatgatcggccacggaggaagaagaagtatcatcgtcatccccccagccaaatccaagaactggaatctttctttaaggaatgcccacatcctgatgaaaagcaaaggttggacctcagcaggaggcttggcttggagactaagcaagtcaagttttggttccagaatagaagaactcaaatgaagactcaactggagcgccatgagaatataattcttaggcaagagaatgacaagctccgagctgagaatggtgtgatgaaggaagctatgtcaaatccaatatgccacaactgtggtggccctgccattcctggccaaatttcatttgatgaacaccaactgaggattgagaatgctcgactgaatgatgaactgagtcgaatttgtactttggcacaaaagttcttgggcaggcccatttcaaacttggctgctccccgctctcttccaagctcgactgccggtctagacctggcaatgggaataaatgggatgggttgtttgaatgctggaggcagcaatcagttgtcgatggggttcgagttgggagatggtgttggaagctcttcacctgtgatgcctctaatgaaaacggttatgggaatgccaaatgatttgcagcatgtgactgatagacatgtttacctggagcttgcaggcgaagctatggatgaattggttaggatggttcaagcagatacccctttgtggatgaaaagttcagatggtggaagcgaaacattgaacgtggagctgtacaggacattttcttgtatcagtaccaggcaaagtggcttggtaactgatgcttcaagggattcttgtatggtgatcataaacagcttggctcttgtagagactatgatggatgcgaatcgatggacagatatgttccctactttggttgctagagcctccaccattggcatgatttccagcggcccaaacggaaccagaaatggtactattcaaatgatgcatgccgagcttcaaatgctttcgccattggttccagtccgtccactcaagttcctccgtttttccaagcagcatgcagagggtgtgtgggctgttgtcgatgtttccattgacatccagcaagatgcttccagtgtgaactgccggaggcttccttctggcttcattgtgcaagatatgcccaatggttactccaaggtacacattgattggctaatcaggttcttggtaaatttcaatactatgtttttaatgaggttgttgaactgcataatgagtttgtttgcaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

529

Amino Acids

58.66

Weight (kDa)

5.95

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 759
AccI GTMKAC 1 cut(s) 309
AciI CCGC 2 cut(s) 757, 1257
AclWI GGATC 1 cut(s) 62
AcoI YGGCCR 2 cut(s) 323, 631
AcsI RAATTY 4 cut(s) 4, 636, 699, 1528
AfaI GTAC 5 cut(s) 706, 1076, 1099, 1282, 1497
AfiI CCNNNNNNNGG 4 cut(s) 376, 796, 1026, 1219
AflIII ACRYGT 1 cut(s) 955
AhdI GACNNNNNGTC 1 cut(s) 780
AjnI CCWGG 4 cut(s) 628, 789, 963, 1100
AleI CACNNNNGTG 2 cut(s) 78, 609
AloI GAACNNNNNNTCC 2 cut(s) 1021, 1053
Alw26I GTCTC 2 cut(s) 446, 1169
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 6 cut(s) 301, 323, 616, 631, 731, 1258
ApeKI GCWGC 4 cut(s) 749, 834, 937, 1366
ApoI RAATTY 4 cut(s) 4, 636, 699, 1528
Asp700I GAANNNNTTC 1 cut(s) 883
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 5 cut(s) 302, 427, 617, 732, 1259
AsuC2I CCSGG 2 cut(s) 213, 214
AsuHPI GGTGA 3 cut(s) 302, 879, 1159
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 177
BalI TGGCCA 1 cut(s) 633
BanI GGYRCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 506
BbvCI CCTCAGC 1 cut(s) 431
BbvI GCAGC 4 cut(s) 736, 846, 949, 1378
BccI CCATC 9 cut(s) 164, 272, 805, 844, 863, 997, 1037, 1177, 1191
BciT130I CCWGG 4 cut(s) 630, 791, 965, 1102
BclI TGATCA 3 cut(s) 18, 295, 1149
BcnI CCSGG 2 cut(s) 213, 214
BcoDI GTCTC 2 cut(s) 446, 1169
BfaI CTAG 2 cut(s) 785, 1227
BfoI RGCGCY 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 5 cut(s) 750, 835, 938, 1258, 1367
BlsI GCNGC 5 cut(s) 751, 836, 939, 1259, 1368
Bme1390I CCNGG 6 cut(s) 213, 214, 630, 791, 965, 1102
Bme18I GGWCC 1 cut(s) 427
BmeRI GACNNNNNGTC 1 cut(s) 780
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 5 cut(s) 302, 427, 617, 732, 1259
BmiI GGNNCC 4 cut(s) 88, 476, 1270, 1329
BmrFI CCNGG 6 cut(s) 213, 214, 630, 791, 965, 1102
BmsI GCATC 6 cut(s) 293, 885, 1114, 1177, 1284, 1411
BpiI GAAGAC 1 cut(s) 506
BpmI CTGGAG 3 cut(s) 530, 849, 986
Bpu10I CCTNAGC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 1328
BpuMI CCSGG 2 cut(s) 213, 214
Bsa29I ATCGAT 1 cut(s) 1195
BsaBI GATNNNNATC 1 cut(s) 1191
BsaJI CCNNGG 4 cut(s) 211, 212, 326, 1491
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 858, 888
Bsc4I CCNNNNNNNGG 4 cut(s) 376, 796, 1026, 1219
Bse118I RCCGGY 2 cut(s) 255, 779
Bse1I ACTGG 4 cut(s) 381, 513, 1331, 1428
Bse3DI GCAATG 2 cut(s) 90, 801
Bse8I GATNNNNATC 1 cut(s) 1191
BseBI CCWGG 4 cut(s) 630, 791, 965, 1102
BseCI ATCGAT 1 cut(s) 1195
BseDI CCNNGG 4 cut(s) 211, 212, 326, 1491
BseJI GATNNNNATC 1 cut(s) 1191
BseLI CCNNNNNNNGG 4 cut(s) 376, 796, 1026, 1219
BseMI GCAATG 2 cut(s) 90, 801
BseMII CTCAG 6 cut(s) 51, 189, 445, 552, 650, 683
BseNI ACTGG 4 cut(s) 381, 513, 1331, 1428
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 4 cut(s) 736, 846, 949, 1378
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 6 cut(s) 303, 325, 618, 633, 733, 1260
BshNI GGYRCC 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 1195
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 5 cut(s) 213, 256, 288, 780, 1441
BslI CCNNNNNNNGG 4 cut(s) 376, 796, 1026, 1219
BsmAI GTCTC 2 cut(s) 446, 1169
BsmI GAATGC 4 cut(s) 401, 676, 829, 927
BsnI GGCC 6 cut(s) 303, 325, 618, 633, 733, 1260
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 1074
Bsp143I GATC 5 cut(s) 18, 67, 295, 319, 1149
BspACI CCGC 2 cut(s) 757, 1257
BspANI GGCC 6 cut(s) 303, 325, 618, 633, 733, 1260
BspCNI CTCAG 6 cut(s) 52, 190, 444, 553, 651, 684
BspDI ATCGAT 1 cut(s) 1195
BspLI GGNNCC 4 cut(s) 88, 476, 1270, 1329
BspPI GGATC 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 889
BspT107I GGYRCC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 759
BsrDI GCAATG 2 cut(s) 90, 801
BsrFI RCCGGY 2 cut(s) 255, 779
BsrGI TGTACA 1 cut(s) 1074
BsrI ACTGG 4 cut(s) 381, 513, 1331, 1428
BssAI RCCGGY 2 cut(s) 255, 779
BssECI CCNNGG 4 cut(s) 211, 212, 326, 1491
BssMI GATC 5 cut(s) 18, 67, 295, 319, 1149
BssT1I CCWWGG 1 cut(s) 1491
Bst2UI CCWGG 4 cut(s) 630, 791, 965, 1102
Bst4CI ACNGT 2 cut(s) 611, 913
Bst6I CTCTTC 3 cut(s) 231, 768, 889
BstAPI GCANNNNNTGC 1 cut(s) 1474
BstAUI TGTACA 1 cut(s) 1074
BstC8I GCNNGC 5 cut(s) 731, 972, 976, 1299, 1371
BstDEI CTNAG 8 cut(s) 60, 198, 431, 456, 533, 561, 659, 692
BstDSI CCRYGG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 5 cut(s) 21, 70, 298, 322, 1152
BstMAI GTCTC 2 cut(s) 446, 1169
BstMBI GATC 5 cut(s) 18, 67, 295, 319, 1149
BstMWI GCNNNNNNNGC 5 cut(s) 261, 980, 1303, 1312, 1474
BstNI CCWGG 4 cut(s) 630, 791, 965, 1102
BstNSI RCATGY 4 cut(s) 944, 959, 1301, 1373
BstSCI CCNGG 6 cut(s) 211, 212, 628, 789, 963, 1100
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 736, 846, 949, 1378
BstV2I GAAGAC 1 cut(s) 506
BstXI CCANNNNNNTGG 2 cut(s) 278, 611
Bsu15I ATCGAT 1 cut(s) 1195
BsuRI GGCC 6 cut(s) 303, 325, 618, 633, 733, 1260
BsuTUI ATCGAT 1 cut(s) 1195
BtgI CCRYGG 1 cut(s) 326
BtsI GCAGTG 2 cut(s) 85, 271
BtsIMutI CAGTG 3 cut(s) 85, 271, 1435
Cac8I GCNNGC 5 cut(s) 731, 972, 976, 1299, 1371
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 2 cut(s) 255, 779
Cfr13I GGNCC 5 cut(s) 302, 427, 617, 732, 1259
Cfr9I CCCGGG 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 1195
Csp6I GTAC 5 cut(s) 705, 1075, 1098, 1281, 1496
CspCI CAANNNNNGTGG 4 cut(s) 36, 71, 595, 630
CviAII CATG 7 cut(s) 166, 518, 941, 956, 1246, 1298, 1370
CviQI GTAC 5 cut(s) 705, 1075, 1098, 1281, 1496
DdeI CTNAG 8 cut(s) 60, 198, 431, 456, 533, 561, 659, 692
DpnI GATC 5 cut(s) 20, 69, 297, 321, 1151
DpnII GATC 5 cut(s) 18, 67, 295, 319, 1149
DriI GACNNNNNGTC 1 cut(s) 780
EaeI YGGCCR 2 cut(s) 323, 631
Eam1104I CTCTTC 3 cut(s) 231, 768, 889
Eam1105I GACNNNNNGTC 1 cut(s) 780
EarI CTCTTC 3 cut(s) 231, 768, 889
Eco130I CCWWGG 1 cut(s) 1491
Eco47I GGWCC 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 4 cut(s) 628, 789, 963, 1100
EcoT14I CCWWGG 1 cut(s) 1491
EcoT22I ATGCAT 1 cut(s) 1299
ErhI CCWWGG 1 cut(s) 1491
FaeI CATG 7 cut(s) 169, 521, 944, 959, 1249, 1301, 1373
FalI AAGNNNNNCTT 2 cut(s) 1123, 1155
FatI CATG 7 cut(s) 165, 517, 940, 955, 1245, 1297, 1369
FauI CCCGC 1 cut(s) 764
FbaI TGATCA 3 cut(s) 18, 295, 1149
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 750, 835, 938, 1258, 1367
Fsp4HI GCNGC 5 cut(s) 750, 835, 938, 1258, 1367
FspBI CTAG 2 cut(s) 785, 1227
GlaI GCGC 1 cut(s) 515
GluI GCNGC 5 cut(s) 750, 835, 938, 1258, 1367
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 3 cut(s) 530, 849, 986
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 6 cut(s) 303, 325, 618, 633, 733, 1260
HapII CCGG 5 cut(s) 213, 256, 288, 780, 1441
HhaI GCGC 1 cut(s) 516
Hin1II CATG 7 cut(s) 169, 521, 944, 959, 1249, 1301, 1373
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 5 cut(s) 380, 502, 694, 1136, 1192
HpaII CCGG 5 cut(s) 213, 256, 288, 780, 1441
HphI GGTGA 3 cut(s) 302, 879, 1159
Hpy166II GTNNAC 5 cut(s) 310, 961, 1340, 1435, 1498
Hpy188I TCNGA 2 cut(s) 557, 1042
Hpy188III TCNNGA 4 cut(s) 48, 407, 478, 785
Hpy8I GTNNAC 5 cut(s) 310, 961, 1340, 1435, 1498
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 571, 1461
HpyCH4III ACNGT 2 cut(s) 611, 913
HpyCH4IV ACGT 1 cut(s) 1065
HpyCH4V TGCA 9 cut(s) 124, 157, 937, 974, 1297, 1373, 1468, 1566, 1583
HpyF10VI GCNNNNNNNGC 5 cut(s) 261, 980, 1303, 1312, 1474
HpyF3I CTNAG 8 cut(s) 60, 198, 431, 456, 533, 561, 659, 692
HpySE526I ACGT 1 cut(s) 1065
Hsp92II CATG 7 cut(s) 169, 521, 944, 959, 1249, 1301, 1373
HspAI GCGC 1 cut(s) 514
Ksp22I TGATCA 3 cut(s) 18, 295, 1149
Kzo9I GATC 5 cut(s) 18, 67, 295, 319, 1149
LguI GCTCTTC 1 cut(s) 889
LmnI GCTCC 5 cut(s) 511, 558, 757, 967, 1069
Lsp1109I GCAGC 4 cut(s) 736, 846, 949, 1378
LweI GCATC 6 cut(s) 293, 885, 1114, 1177, 1284, 1411
MaeI CTAG 2 cut(s) 785, 1227
MaeII ACGT 1 cut(s) 1065
MaeIII GTNAC 4 cut(s) 266, 943, 1117, 1484
MalI GATC 5 cut(s) 20, 69, 297, 321, 1151
MbiI CCGCTC 1 cut(s) 759
MboI GATC 5 cut(s) 18, 67, 295, 319, 1149
MboII GAAGA 7 cut(s) 248, 346, 349, 498, 511, 755, 876
MhlI GDGCHC 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 7 cut(s) 4, 115, 528, 636, 699, 992, 1528
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 2 cut(s) 496, 703
MmeI TCCRAC 2 cut(s) 405, 856
Mox20I TGGCCA 1 cut(s) 633
Mph1103I ATGCAT 1 cut(s) 1299
MroXI GAANNNNTTC 1 cut(s) 883
MscI TGGCCA 1 cut(s) 633
MseI TTAA 2 cut(s) 390, 1547
MslI CAYNNNNRTG 5 cut(s) 78, 276, 408, 609, 1244
Msp20I TGGCCA 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 1257
MspI CCGG 5 cut(s) 213, 256, 288, 780, 1441
MspR9I CCNGG 6 cut(s) 213, 214, 630, 791, 965, 1102
Mva1269I GAATGC 4 cut(s) 401, 676, 829, 927
MvaI CCWGG 4 cut(s) 630, 791, 965, 1102
MwoI GCNNNNNNNGC 5 cut(s) 261, 980, 1303, 1312, 1474
NciI CCSGG 2 cut(s) 213, 214
NdeII GATC 5 cut(s) 18, 67, 295, 319, 1149
NlaIII CATG 7 cut(s) 169, 521, 944, 959, 1249, 1301, 1373
NlaIV GGNNCC 4 cut(s) 88, 476, 1270, 1329
NmeAIII GCCGAG 1 cut(s) 1327
NmuCI GTSAC 2 cut(s) 266, 943
NsiI ATGCAT 1 cut(s) 1299
NspI RCATGY 4 cut(s) 944, 959, 1301, 1373
OliI CACNNNNGTG 2 cut(s) 78, 609
PaeI GCATGC 2 cut(s) 1301, 1373
PciI ACATGT 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 889
PctI GAATGC 4 cut(s) 401, 676, 829, 927
PdmI GAANNNNTTC 1 cut(s) 883
PfeI GAWTC 3 cut(s) 380, 1136, 1192
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 5 cut(s) 751, 836, 939, 1259, 1368
PleI GAGTC 2 cut(s) 496, 702
PpsI GAGTC 2 cut(s) 496, 702
PscI ACATGT 1 cut(s) 955
Psp6I CCWGG 4 cut(s) 628, 789, 963, 1100
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 4 cut(s) 628, 789, 963, 1100
PspN4I GGNNCC 4 cut(s) 88, 476, 1270, 1329
PspPI GGNCC 5 cut(s) 302, 427, 617, 732, 1259
RsaI GTAC 5 cut(s) 706, 1076, 1099, 1282, 1497
RsaNI GTAC 5 cut(s) 705, 1075, 1098, 1281, 1496
RseI CAYNNNNRTG 5 cut(s) 78, 276, 408, 609, 1244
SalI GTCGAC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 889
SaqAI TTAA 2 cut(s) 390, 1547
SatI GCNGC 5 cut(s) 750, 835, 938, 1258, 1367
Sau3AI GATC 5 cut(s) 18, 67, 295, 319, 1149
Sau96I GGNCC 5 cut(s) 302, 427, 617, 732, 1259
SchI GAGTC 2 cut(s) 496, 703
ScrFI CCNGG 6 cut(s) 213, 214, 630, 791, 965, 1102
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 6 cut(s) 293, 885, 1114, 1177, 1284, 1411
SinI GGWCC 1 cut(s) 427
SmaI CCCGGG 1 cut(s) 214
SmiMI CAYNNNNRTG 5 cut(s) 78, 276, 408, 609, 1244
SmlI CTYRAG 1 cut(s) 1343
SmoI CTYRAG 1 cut(s) 1343
SphI GCATGC 2 cut(s) 1301, 1373
Sse9I AATT 7 cut(s) 4, 115, 528, 636, 699, 992, 1528
SsiI CCGC 2 cut(s) 757, 1257
SspMI CTAG 2 cut(s) 785, 1227
StyD4I CCNGG 6 cut(s) 211, 212, 628, 789, 963, 1100
StyI CCWWGG 1 cut(s) 1491
TaaI ACNGT 2 cut(s) 611, 913
TaiI ACGT 1 cut(s) 1068
TaqI TCGA 8 cut(s) 309, 676, 697, 773, 848, 858, 1195, 1395
TasI AATT 7 cut(s) 4, 115, 528, 636, 699, 992, 1528
TatI WGTACW 2 cut(s) 704, 1074
TauI GCSGC 1 cut(s) 1260
TfiI GAWTC 3 cut(s) 380, 1136, 1192
Tru1I TTAA 2 cut(s) 390, 1547
Tru9I TTAA 2 cut(s) 390, 1547
TscAI CASTG 3 cut(s) 85, 271, 1435
TseFI GTSAC 2 cut(s) 266, 943
TseI GCWGC 4 cut(s) 749, 834, 937, 1366
Tsp45I GTSAC 2 cut(s) 266, 943
TspGWI ACGGA 4 cut(s) 343, 1281, 1325, 1343
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 3 cut(s) 85, 271, 1435
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 4 cut(s) 4, 636, 699, 1528
XbaI TCTAGA 1 cut(s) 784
XceI RCATGY 4 cut(s) 944, 959, 1301, 1373
XcmI CCANNNNNNNNNTGG 2 cut(s) 611, 742
XmaI CCCGGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 883
XspI CTAG 2 cut(s) 785, 1227
Zsp2I ATGCAT 1 cut(s) 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.