Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005198

Physical Location & Seq

Genomic Coordinates Forward (+)

19144376 .. 19148290

Gene Structure 3915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20820.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGATGAGTACGAGAGCAGGTCGGGGAGTGATAACTTTGAGGGCGCATCTGGGGATCGATCAGGACGGCGGCGGCGACCAACGGCCGAGGAAGAAAAAGTACCATAGGCACACTCCTAATCAAATCCAAGAACTTGAAAACTTTTTCAAAGAGTGTCCTCATCCGGATGAGAAGCAAAGGTCGGAGCTCAGCCGTCGTCTCAGCTTAGAGACGAAGCAAGTCAAGTTCTGGTTTCAAAACAGAAGAACTCAGATGAAGACACAACTTGAACGCCACGAGAATATAATTCTCAGGCAAGAGAATGACAAGCTGAGAGCTGAGAATGGTGTGATAAAGGATGCTATGTCAAACCCGGTTTGCAATAATTGTGGTGGTCCGGCCATTCCTGGTCAAATATCGTTTGAGGAACACCAACTTAGGATTGAGAATGCTCGACTGAAGGATGAACTGAACCGCATATGTACTCTCGCGAACAAGTTCTTGGGCAGGCCCATCTCCTCCTTGGGCAATGCCTCATCCGGTTTGGAACTTGGTGTTGGAAGAACTGGGATGGGTGGTATGAATGCTGTAGGCGCTGATTTGCCACTGGGGCTTGATTTAGGAGATGGGATTTCAAGCTCTTCCCCTATGATGCCTCTCGTTAAGACCTGTTCAGGCATGATGGGGAATGAAGTACCGTTTGAGAGATCTATGTACATAGATCGTGCATTGGCAGCTATGGATGAATTGGTGAAGATGGCTCAGGTAGATAGCCCCTTGTGGATCAAAAGTTCAGATGGGACAGATATATTGAACCTTGAGGAGTACCGGGCATTTTCTTGCATTGGTATGAAACCTAGCAGCTTTGTAACTGAAGCCACTAGGGACACTTGTGTCGTAATACTAAACAGCTTGGCTCTCGTTGAGACATTAATGGATGCGAATCGATGGGCAGAAATGTTTCAGTGTTTGGTTGCTCGAGCCTCCACCATTAATATGATATCCAACGGCATGGATGGGACTAGAAATGGTGCTCTTCAAGTGATGCACGCTGAGCTTCAAATGCTATCGCCGTTGATCCCTGTTCGTCCACTGAAGTTCCTCCGTTTCTGCAAGCAACATGCAGAGGGTGTTTGGGCTGTAGTTGATGTTTCTCTTGACATCAATCAAGAAGGTTCCAATACAAACCCGTTTTGGAACTGCCGGAGGCTTCCTTCCGGATGCATTGTGCAAGATATGCCTAATAATTGCTCCAAGGTGACTTGGATAGAACACACTGAATATGATGAGAATGTCGTCCACCCCCTCTTCCGGCAATCACTGCGTTCGGGTATGGGCTTTGGTGCACACAGGTGGCTTGCCACTCTGCAAAGGCAATTTGAGAGCCTGGCATTCCTCATTTCGTCTGCCAACTCCAGTGAAGATCACTCAGGGATAGGTGTCAACGGTAAGAAAAGCATGCTAAAGCTTGCACAGCGTATGGTGGATAACTTCTGTGCTGGGATTTCTGCCTCGTCTGTGCGCAAGTGGGACAAACTTTGCTTTGAAAATGTTAGTGAAGATACGAGGGTTATGGCCCGGAAGAGTATGAATGACCCCGGCGAGCCACCAGGGATTGTGTTGAGTGTTGCAACAACTGTTTGGGTTCCGGTATCAAGGCATAGGGTGTTTGAGTTTTTGCGAGATGAACAGTTTAGGAAGGAATGGGACATTCTGTCCAGCAACGTTCCAATGCAACGCATTGTCCAAATTGCGAAGGGCCAAGGAGGTGCCAATGGTGTTTCTCTTCTTCGTGCTAACGAGACAAATGCCAACGACAGTAACATGCTGATATTGCAAGAGACGTGGACTGACCCTTCGGGCTCACTTGTAGTGTATGCACCAGTTGACACTGAATCAATAAATGTCGTGATGCGCGGTGGAGATTCTGCTTATGTAGCTCTTCTGCCATCAGGGTTTGCAATCCTTCCCGGTGGCCCACCTGGCTATGAAGTGGTCAAATCTGAAGGCAATGGCAGTGATGGCAGCAACGGATGTTTGCTGACTGTTGCATTCCAAATTCTGGTTAGCAGCCTTCCGACGGCCAAAATCAACATGGAGTCGGTTGAGACAGTCAGCACTCTCATATCTTGCACCATTCAGAAGATAAAATCGTCTCTTCAAGCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

717

Amino Acids

78.97

Weight (kDa)

6.69

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005198)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130
malus_domestica	MD01G1198100.v1.1 MD07G1266200.v1.1
prunus_persica	Prupe.2G291400_v2.0.a1
pyrus_communis	pycom01g20820 pycom07g24390
rosa_chinensis	RchiOBHm_Chr1g0376881
rosa_laevigata	RLG00000026562
rosa_multiflora	Rmu_co8045660.1_g000001 Rmu_sc0002113.1_g000002 Rmu_ssc0000125.1_g000012
rosa_roxburghii	Rroxscaffold_4G00281650
rosa_rugosa	Rorug01G0399300 Rorug01G0399400 Rorug01G0399500 Rorug01G0399600 Rorug01G0399600
rosa_samantha	Rh1AG416600 Rh1BG375800 Rh1CG389600 Rh1DG406400
rosa_wichuraiana	Rw1G036550 Rw3G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	872
Acc16I	TGCGCA	1 cut(s)	1502
Acc36I	ACCTGC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	1748
AccB7I	CCANNNNNTGG	1 cut(s)	2041
AccII	CGCG	2 cut(s)	470, 1896
AccIII	TCCGGA	2 cut(s)	163, 1196
AciI	CCGC	4 cut(s)	69, 72, 454, 1896
AclI	AACGTT	1 cut(s)	1704
AclWI	GGATC	3 cut(s)	62, 770, 1051
AcoI	YGGCCR	3 cut(s)	83, 378, 2061
AcsI	RAATTY	1 cut(s)	2037
AcuI	CTGAAG	4 cut(s)	458, 873, 1094, 2004
AfaI	GTAC	6 cut(s)	10, 101, 463, 675, 695, 806
AfiI	CCNNNNNNNGG	3 cut(s)	1290, 2041, 2059
AhdI	GACNNNNNGTC	1 cut(s)	1693
AjiI	CACGTC	1 cut(s)	1824
AjnI	CCWGG	4 cut(s)	385, 1365, 1588, 1960
AjuI	GAANNNNNNNTTGG	4 cut(s)	464, 496, 519, 551
AleI	CACNNNNGTG	1 cut(s)	1330
AloI	GAACNNNNNNTCC	2 cut(s)	754, 786
Alw21I	GWGCWC	3 cut(s)	189, 1015, 1327
Alw26I	GTCTC	7 cut(s)	203, 203, 899, 1775, 1814, 2081, 2139
Alw44I	GTGCAC	1 cut(s)	1323
AlwI	GGATC	3 cut(s)	62, 770, 1051
Ama87I	CYCGRG	1 cut(s)	957
Aor13HI	TCCGGA	2 cut(s)	163, 1196
AoxI	GGCC	7 cut(s)	83, 378, 488, 1554, 1738, 1954, 2061
ApaLI	GTGCAC	1 cut(s)	1323
ApeKI	GCWGC	5 cut(s)	713, 840, 2004, 2049, 2144
ApoI	RAATTY	1 cut(s)	2037
ArsI	GACNNNNNNTTYG	2 cut(s)	1819, 1851
AseI	ATTAAT	2 cut(s)	911, 972
Asp700I	GAANNNNTTC	2 cut(s)	476, 939
AspLEI	GCGC	4 cut(s)	46, 575, 1503, 1896
AspS9I	GGNCC	5 cut(s)	374, 489, 1555, 1738, 1955
AsuC2I	CCSGG	5 cut(s)	353, 809, 1558, 1578, 1950
AsuHPI	GGTGA	2 cut(s)	742, 1249
AvaI	CYCGRG	1 cut(s)	957
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	1327
BaeI	ACNNNNGTAYC	2 cut(s)	1533, 1566
BanI	GGYRCC	1 cut(s)	1748
BanII	GRGCYC	2 cut(s)	189, 1844
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	3 cut(s)	189, 1015, 1327
BbvI	GCAGC	4 cut(s)	725, 852, 2016, 2061
BceAI	ACGGC	6 cut(s)	82, 98, 177, 1003, 1036, 2076
BcgI	CGANNNNNNTGC	2 cut(s)	1769, 1803
BciT130I	CCWGG	4 cut(s)	387, 1367, 1590, 1962
BcnI	CCSGG	5 cut(s)	353, 809, 1558, 1578, 1950
BcoDI	GTCTC	7 cut(s)	203, 203, 899, 1775, 1814, 2081, 2139
BfaI	CTAG	3 cut(s)	837, 861, 1002
BfmI	CTRYAG	2 cut(s)	567, 1119
BfoI	RGCGCY	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	8
BglI	GCCNNNNNGGC	2 cut(s)	589, 1962
BglII	AGATCT	1 cut(s)	686
BisI	GCNGC	7 cut(s)	70, 73, 714, 841, 2005, 2050, 2145
BlpI	GCTNAGC	2 cut(s)	188, 1032
BlsI	GCNGC	7 cut(s)	71, 74, 715, 842, 2006, 2051, 2146
Bme1390I	CCNGG	9 cut(s)	353, 387, 809, 1367, 1558, 1578, 1590, 1950, 1962
Bme18I	GGWCC	1 cut(s)	374
BmeRI	GACNNNNNGTC	1 cut(s)	1693
BmeT110I	CYCGRG	1 cut(s)	957
BmgBI	CACGTC	1 cut(s)	1824
BmgT120I	GGNCC	5 cut(s)	374, 489, 1555, 1738, 1955
BmiI	GGNNCC	3 cut(s)	1156, 1626, 1750
BmrFI	CCNGG	9 cut(s)	353, 387, 809, 1367, 1558, 1578, 1590, 1950, 1962
BmrI	ACTGGG	2 cut(s)	555, 596
BmsI	GCATC	7 cut(s)	55, 328, 621, 907, 1014, 1190, 1881
BmuI	ACTGGG	2 cut(s)	555, 596
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	1378
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	2 cut(s)	188, 1032
BpuEI	CTTGAG	1 cut(s)	818
BpuMI	CCSGG	5 cut(s)	353, 809, 1558, 1578, 1950
Bsa29I	ATCGAT	2 cut(s)	57, 925
BsaBI	GATNNNNATC	1 cut(s)	921
BsaJI	CCNNGG	6 cut(s)	86, 501, 1233, 1576, 1589, 1741
BsaWI	WCCGGW	4 cut(s)	163, 518, 1196, 1627
Bsc4I	CCNNNNNNNGG	3 cut(s)	1290, 2041, 2059
Bse1I	ACTGG	4 cut(s)	550, 591, 1395, 1862
Bse3DI	GCAATG	2 cut(s)	514, 1996
Bse8I	GATNNNNATC	1 cut(s)	921
BseAI	TCCGGA	2 cut(s)	163, 1196
BseBI	CCWGG	4 cut(s)	387, 1367, 1590, 1962
BseCI	ATCGAT	2 cut(s)	57, 925
BseDI	CCNNGG	6 cut(s)	86, 501, 1233, 1576, 1589, 1741
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	3 cut(s)	1290, 2041, 2059
BseMI	GCAATG	2 cut(s)	514, 1996
BseMII	CTCAG	9 cut(s)	202, 214, 263, 302, 304, 309, 755, 1023, 1422
BseNI	ACTGG	4 cut(s)	550, 591, 1395, 1862
BseRI	GAGGAG	2 cut(s)	487, 815
BseSI	GKGCMC	1 cut(s)	1327
BseX3I	CGGCCG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	725, 852, 2016, 2061
BseYI	CCCAGC	1 cut(s)	1478
Bsh1236I	CGCG	2 cut(s)	470, 1896
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	7 cut(s)	85, 380, 490, 1556, 1740, 1956, 2063
BshNI	GGYRCC	1 cut(s)	1748
BshVI	ATCGAT	2 cut(s)	57, 925
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	3 cut(s)	189, 1015, 1327
BsiHKCI	CYCGRG	1 cut(s)	957
BslFI	GGGAC	5 cut(s)	793, 878, 1012, 1523, 1700
BslI	CCNNNNNNNGG	3 cut(s)	1290, 2041, 2059
BsmAI	GTCTC	7 cut(s)	203, 203, 899, 1775, 1814, 2081, 2139
BsmBI	CGTCTC	4 cut(s)	203, 203, 1814, 2139
BsmFI	GGGAC	5 cut(s)	793, 878, 1012, 1523, 1700
BsmI	GAATGC	4 cut(s)	433, 568, 1370, 2030
BsnI	GGCC	7 cut(s)	85, 380, 490, 1556, 1740, 1956, 2063
BsoBI	CYCGRG	1 cut(s)	957
Bsp1286I	GDGCHC	4 cut(s)	189, 1015, 1327, 1844
Bsp13I	TCCGGA	2 cut(s)	163, 1196
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
Bsp1720I	GCTNAGC	2 cut(s)	188, 1032
Bsp68I	TCGCGA	1 cut(s)	470
BspACI	CCGC	4 cut(s)	69, 72, 454, 1896
BspANI	GGCC	7 cut(s)	85, 380, 490, 1556, 1740, 1956, 2063
BspCNI	CTCAG	9 cut(s)	201, 213, 262, 303, 303, 310, 754, 1024, 1421
BspDI	ATCGAT	2 cut(s)	57, 925
BspEI	TCCGGA	2 cut(s)	163, 1196
BspFNI	CGCG	2 cut(s)	470, 1896
BspLI	GGNNCC	3 cut(s)	1156, 1626, 1750
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	3 cut(s)	62, 770, 1051
BspQI	GCTCTTC	3 cut(s)	625, 1020, 1926
BspT107I	GGYRCC	1 cut(s)	1748
BsrDI	GCAATG	2 cut(s)	514, 1996
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	4 cut(s)	550, 591, 1395, 1862
BssECI	CCNNGG	6 cut(s)	86, 501, 1233, 1576, 1589, 1741
BssMI	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	3 cut(s)	501, 1233, 1741
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	4 cut(s)	387, 1367, 1590, 1962
Bst4CI	ACNGT	7 cut(s)	678, 1427, 1618, 1671, 1799, 2026, 2092
Bst6I	CTCTTC	7 cut(s)	625, 1020, 1292, 1556, 1770, 1926, 2142
BstAPI	GCANNNNNTGC	2 cut(s)	1216, 1300
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	7 cut(s)	488, 1029, 1094, 1338, 1439, 1449, 1583
BstFNI	CGCG	2 cut(s)	470, 1896
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	4 cut(s)	46, 575, 1503, 1896
BstKTI	GATC	7 cut(s)	57, 61, 689, 703, 765, 1059, 1405
BstMAI	GTCTC	7 cut(s)	203, 203, 899, 1775, 1814, 2081, 2139
BstMBI	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
BstMCI	CGRYCG	1 cut(s)	86
BstNI	CCWGG	4 cut(s)	387, 1367, 1590, 1962
BstNSI	RCATGY	3 cut(s)	1103, 1441, 1807
BstSCI	CCNGG	9 cut(s)	351, 385, 807, 1365, 1556, 1576, 1588, 1948, 1960
BstSFI	CTRYAG	2 cut(s)	567, 1119
BstSLI	GKGCMC	1 cut(s)	1327
BstUI	CGCG	2 cut(s)	470, 1896
BstV1I	GCAGC	4 cut(s)	725, 852, 2016, 2061
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	686
BstXI	CCANNNNNNTGG	1 cut(s)	991
BstYI	RGATCY	1 cut(s)	686
BstZI	CGGCCG	1 cut(s)	83
Bsu15I	ATCGAT	2 cut(s)	57, 925
BsuRI	GGCC	7 cut(s)	85, 380, 490, 1556, 1740, 1956, 2063
BsuTUI	ATCGAT	2 cut(s)	57, 925
BtrI	CACGTC	1 cut(s)	1824
BtsI	GCAGTG	2 cut(s)	1298, 2002
BtsIMutI	CAGTG	8 cut(s)	584, 950, 1070, 1254, 1298, 1402, 1869, 2002
BtuMI	TCGCGA	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	7 cut(s)	488, 1029, 1094, 1338, 1439, 1449, 1583
CfoI	GCGC	4 cut(s)	46, 575, 1503, 1896
Cfr13I	GGNCC	5 cut(s)	374, 489, 1555, 1738, 1955
ClaI	ATCGAT	2 cut(s)	57, 925
Csp6I	GTAC	6 cut(s)	9, 100, 462, 674, 694, 805
CspCI	CAANNNNNGTGG	4 cut(s)	349, 384, 1805, 1840
CviAII	CATG	6 cut(s)	658, 991, 1100, 1438, 1804, 2074
CviQI	GTAC	6 cut(s)	9, 100, 462, 674, 694, 805
DpnI	GATC	7 cut(s)	56, 60, 688, 702, 764, 1058, 1404
DpnII	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
DrdI	GACNNNNNNGTC	1 cut(s)	872
DriI	GACNNNNNGTC	1 cut(s)	1693
DseDI	GACNNNNNNGTC	1 cut(s)	872
EaeI	YGGCCR	3 cut(s)	83, 378, 2061
EagI	CGGCCG	1 cut(s)	83
Eam1104I	CTCTTC	7 cut(s)	625, 1020, 1292, 1556, 1770, 1926, 2142
Eam1105I	GACNNNNNGTC	1 cut(s)	1693
EarI	CTCTTC	7 cut(s)	625, 1020, 1292, 1556, 1770, 1926, 2142
Ecl136II	GAGCTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	83
Eco130I	CCWWGG	3 cut(s)	501, 1233, 1741
Eco24I	GRGCYC	2 cut(s)	189, 1844
Eco32I	GATATC	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	374
Eco52I	CGGCCG	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	4 cut(s)	458, 873, 1094, 2004
Eco88I	CYCGRG	1 cut(s)	957
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	4 cut(s)	385, 1365, 1588, 1960
EcoRV	GATATC	1 cut(s)	981
EcoT14I	CCWWGG	3 cut(s)	501, 1233, 1741
EcoT22I	ATGCAT	1 cut(s)	1205
EcoT38I	GRGCYC	2 cut(s)	189, 1844
ErhI	CCWWGG	3 cut(s)	501, 1233, 1741
Esp3I	CGTCTC	4 cut(s)	203, 203, 1814, 2139
FaeI	CATG	6 cut(s)	661, 994, 1103, 1441, 1807, 2077
FaqI	GGGAC	5 cut(s)	793, 878, 1012, 1523, 1700
FatI	CATG	6 cut(s)	657, 990, 1099, 1437, 1803, 2073
FauNDI	CATATG	1 cut(s)	458
Fnu4HI	GCNGC	7 cut(s)	70, 73, 714, 841, 2005, 2050, 2145
FriOI	GRGCYC	2 cut(s)	189, 1844
Fsp4HI	GCNGC	7 cut(s)	70, 73, 714, 841, 2005, 2050, 2145
FspBI	CTAG	3 cut(s)	837, 861, 1002
FspI	TGCGCA	1 cut(s)	1502
GlaI	GCGC	4 cut(s)	45, 574, 1502, 1895
GluI	GCNGC	7 cut(s)	70, 73, 714, 841, 2005, 2050, 2145
GsaI	CCCAGC	1 cut(s)	1482
GsuI	CTGGAG	1 cut(s)	1378
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	7 cut(s)	85, 380, 490, 1556, 1740, 1956, 2063
HhaI	GCGC	4 cut(s)	46, 575, 1503, 1896
Hin1II	CATG	6 cut(s)	661, 994, 1103, 1441, 1807, 2077
Hin6I	GCGC	4 cut(s)	44, 573, 1501, 1894
HinP1I	GCGC	4 cut(s)	44, 573, 1501, 1894
HincII	GTYRAC	2 cut(s)	1423, 1867
HindII	GTYRAC	2 cut(s)	1423, 1867
HindIII	AAGCTT	1 cut(s)	1445
HinfI	GANTC	4 cut(s)	922, 1874, 1904, 2078
HphI	GGTGA	2 cut(s)	742, 1249
Hpy166II	GTNNAC	6 cut(s)	1070, 1279, 1325, 1423, 1827, 1867
Hpy188I	TCNGA	6 cut(s)	184, 252, 775, 1984, 2058, 2121
Hpy188III	TCNNGA	7 cut(s)	62, 164, 469, 1136, 1148, 1197, 1888
Hpy8I	GTNNAC	6 cut(s)	1070, 1279, 1325, 1423, 1827, 1867
Hpy99I	CGWCG	2 cut(s)	198, 2062
HpyAV	CCTTC	9 cut(s)	433, 1145, 1203, 1672, 1729, 1845, 1955, 1979, 2063
HpyCH4III	ACNGT	7 cut(s)	678, 1427, 1618, 1671, 1799, 2026, 2092
HpyCH4IV	ACGT	2 cut(s)	1704, 1823
HpySE526I	ACGT	2 cut(s)	1704, 1823
Hsp92II	CATG	6 cut(s)	661, 994, 1103, 1441, 1807, 2077
HspAI	GCGC	4 cut(s)	44, 573, 1501, 1894
Kpn2I	TCCGGA	2 cut(s)	163, 1196
Kzo9I	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
LguI	GCTCTTC	3 cut(s)	625, 1020, 1926
LmnI	GCTCC	2 cut(s)	184, 1235
Lsp1109I	GCAGC	4 cut(s)	725, 852, 2016, 2061
LweI	GCATC	7 cut(s)	55, 328, 621, 907, 1014, 1190, 1881
MaeI	CTAG	3 cut(s)	837, 861, 1002
MaeII	ACGT	2 cut(s)	1704, 1823
MaeIII	GTNAC	3 cut(s)	847, 1237, 1799
MalI	GATC	7 cut(s)	56, 60, 688, 702, 764, 1058, 1404
MboI	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	4 cut(s)	189, 1015, 1327, 1844
MluCI	AATT	7 cut(s)	285, 364, 725, 1225, 1355, 1728, 2037
MlyI	GAGTC	1 cut(s)	2087
MmeI	TCCRAC	4 cut(s)	162, 517, 1008, 2081
Mph1103I	ATGCAT	1 cut(s)	1205
MroI	TCCGGA	2 cut(s)	163, 1196
MroXI	GAANNNNTTC	2 cut(s)	476, 939
MseI	TTAA	3 cut(s)	642, 911, 972
MslI	CAYNNNNRTG	4 cut(s)	165, 827, 974, 1330
MspR9I	CCNGG	9 cut(s)	353, 387, 809, 1367, 1558, 1578, 1590, 1950, 1962
Mva1269I	GAATGC	4 cut(s)	433, 568, 1370, 2030
MvaI	CCWGG	4 cut(s)	387, 1367, 1590, 1962
MvnI	CGCG	2 cut(s)	470, 1896
NciI	CCSGG	5 cut(s)	353, 809, 1558, 1578, 1950
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
NlaIII	CATG	6 cut(s)	661, 994, 1103, 1441, 1807, 2077
NlaIV	GGNNCC	3 cut(s)	1156, 1626, 1750
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	1237
NruI	TCGCGA	1 cut(s)	470
NsbI	TGCGCA	1 cut(s)	1502
NsiI	ATGCAT	1 cut(s)	1205
NspI	RCATGY	3 cut(s)	1103, 1441, 1807
OliI	CACNNNNGTG	1 cut(s)	1330
PaeI	GCATGC	1 cut(s)	1441
PaeR7I	CTCGAG	1 cut(s)	957
PciSI	GCTCTTC	3 cut(s)	625, 1020, 1926
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	4 cut(s)	433, 568, 1370, 2030
PdmI	GAANNNNTTC	2 cut(s)	476, 939
PfeI	GAWTC	3 cut(s)	922, 1874, 1904
PflMI	CCANNNNNTGG	1 cut(s)	2041
PkrI	GCNGC	7 cut(s)	71, 74, 715, 842, 2006, 2051, 2146
PleI	GAGTC	1 cut(s)	2086
PpsI	GAGTC	1 cut(s)	2086
PshBI	ATTAAT	2 cut(s)	911, 972
Psp124BI	GAGCTC	1 cut(s)	189
Psp1406I	AACGTT	1 cut(s)	1704
Psp6I	CCWGG	4 cut(s)	385, 1365, 1588, 1960
PspFI	CCCAGC	1 cut(s)	1478
PspGI	CCWGG	4 cut(s)	385, 1365, 1588, 1960
PspN4I	GGNNCC	3 cut(s)	1156, 1626, 1750
PspPI	GGNCC	5 cut(s)	374, 489, 1555, 1738, 1955
PspXI	VCTCGAGB	1 cut(s)	957
PsuI	RGATCY	1 cut(s)	686
RruI	TCGCGA	1 cut(s)	470
RsaI	GTAC	6 cut(s)	10, 101, 463, 675, 695, 806
RsaNI	GTAC	6 cut(s)	9, 100, 462, 674, 694, 805
RseI	CAYNNNNRTG	4 cut(s)	165, 827, 974, 1330
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	3 cut(s)	625, 1020, 1926
SaqAI	TTAA	3 cut(s)	642, 911, 972
SatI	GCNGC	7 cut(s)	70, 73, 714, 841, 2005, 2050, 2145
Sau3AI	GATC	7 cut(s)	54, 58, 686, 700, 762, 1056, 1402
Sau96I	GGNCC	5 cut(s)	374, 489, 1555, 1738, 1955
SchI	GAGTC	1 cut(s)	2087
ScrFI	CCNGG	9 cut(s)	353, 387, 809, 1367, 1558, 1578, 1590, 1950, 1962
SduI	GDGCHC	4 cut(s)	189, 1015, 1327, 1844
SfaNI	GCATC	7 cut(s)	55, 328, 621, 907, 1014, 1190, 1881
SfcI	CTRYAG	2 cut(s)	567, 1119
Sfr274I	CTCGAG	1 cut(s)	957
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	957
SmiMI	CAYNNNNRTG	4 cut(s)	165, 827, 974, 1330
SmlI	CTYRAG	2 cut(s)	797, 957
SmoI	CTYRAG	2 cut(s)	797, 957
SphI	GCATGC	1 cut(s)	1441
Sse9I	AATT	7 cut(s)	285, 364, 725, 1225, 1355, 1728, 2037
SsiI	CCGC	4 cut(s)	69, 72, 454, 1896
SspMI	CTAG	3 cut(s)	837, 861, 1002
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	9 cut(s)	351, 385, 807, 1365, 1556, 1576, 1588, 1948, 1960
StyI	CCWWGG	3 cut(s)	501, 1233, 1741
TaaI	ACNGT	7 cut(s)	678, 1427, 1618, 1671, 1799, 2026, 2092
TaiI	ACGT	2 cut(s)	1707, 1826
TaqI	TCGA	4 cut(s)	57, 433, 925, 958
TasI	AATT	7 cut(s)	285, 364, 725, 1225, 1355, 1728, 2037
TatI	WGTACW	2 cut(s)	461, 693
TauI	GCSGC	2 cut(s)	72, 75
TfiI	GAWTC	3 cut(s)	922, 1874, 1904
Tru1I	TTAA	3 cut(s)	642, 911, 972
Tru9I	TTAA	3 cut(s)	642, 911, 972
TscAI	CASTG	8 cut(s)	591, 950, 1077, 1261, 1305, 1402, 1876, 2002
TseFI	GTSAC	1 cut(s)	1237
TseI	GCWGC	5 cut(s)	713, 840, 2004, 2049, 2144
Tsp45I	GTSAC	1 cut(s)	1237
TspDTI	ATGAA	9 cut(s)	269, 459, 575, 684, 738, 845, 1583, 1680, 1983
TspGWI	ACGGA	2 cut(s)	1073, 2025
TspRI	CASTG	8 cut(s)	591, 950, 1077, 1261, 1305, 1402, 1876, 2002
Van91I	CCANNNNNTGG	1 cut(s)	2041
VneI	GTGCAC	1 cut(s)	1323
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	2 cut(s)	911, 972
XapI	RAATTY	1 cut(s)	2037
XceI	RCATGY	3 cut(s)	1103, 1441, 1807
XcmI	CCANNNNNNNNNTGG	2 cut(s)	499, 2071
XhoI	CTCGAG	1 cut(s)	957
XmnI	GAANNNNTTC	2 cut(s)	476, 939
XspI	CTAG	3 cut(s)	837, 861, 1002
Zsp2I	ATGCAT	1 cut(s)	1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.