Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005198

Physical Location & Seq

Genomic Coordinates Forward (+)

62525906 .. 62531533

Gene Structure 5628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG406400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGGGGCATCCGGTGATGATCAAGACCCTGTCGACGAGGATGATCGGCCACGGAGGAAGAAGAAGTATCATCGTCATACCCCCAGCCAAATCCAAGAACTGGAATCGTATGATTGATTTATCTCTATTGTCTTTGAGCTGTTTTGGTGTTAGTGTTAGTGTTTTTTTTTTTTTTCCTGCTGTTGTGTTGTTCTTGATGTTCTTGTGGTGTAGTTTCTTTAAGGAATGCCCACATCCTGATGAAAAGCAAAGGTTGGACCTCAGCAGGAGGCTTGGCTTGGAGACTAAGCAAGTCAAGTTTTGGTTCCAGAATAGAAGAACTCAAATGAAGACTCAACTGGAGCGCCATGAGAATATAATTCTTAGGCAAGAGAATGACAAGCTCCGAGCTGAGAATGGTGTGATGAAGGAAGCTATGTCAAATCCAATATGCCACAACTGTGGAGGCCCTGCCATTCCTGGCCAAATTTCATTTGATGAACACCAACTGAGGATTGAGAATGCTCGACTGAATGATGAACTGAGTCGAATTTGTACTTTGGCGCAAAAGTTCTTGGGCAGGCCCATTTCAAACTTGGCCACTCCCCGCTCTCTTCCAAGCTCAACTGCTGGTCTGGACCTGGCAATGGGAATAAATGGGATGGGTTGTTTGAACGCTGGAGGCAGCAATCAGTTGTCGATGGGGTTCGAGTTGGGAGATGGTGTTGGAAGCTCGTCGCCTGTGATGCCTCTAATGAAACCGGTTATGGGAATGCCAAATGAATTGCAGCATGTGACTGATAGACATGTTTACCTGGAGCTTGCAGGGGAAGCTATGGATGAATTGGTTAGGATGGTTCAAGCAGATACCCCTTTGTGGATGAAAAGTTCAGATGGTGGAAGCGAAACATTGAACGTGGAGCTGTACAGGACATTTTCTTGTATCAGTACCAGGCAAAGTGGCATGATGACTGATGCTTCAAGGGATTCTTGTATGGTGATCATTAACAGCTTGGCTCTTGTAGAGACTATGATGGATGCGAATCGATGGACAGATATGTTCCCTACTTTGGTTGCTAGAGCCTCCACCATTGGCATGATTTCCAGCGGCCCAAACGGAACCAGAAATGGTACTATTCAAATGATGCATGCCGAGCTTCAAATGCTTTCGCCATTGGTTCCAGTCCGTCCTCTGAAGTTCCTCCGCTTTTCCAAGCAGCATGCAGAGGGTGTGTGGGCTGTCGTCGATGTTTCCGTTGACATCCAGCAAGATGCTTCCAGTGCGAACTGCCGGAGGCTTCCTTCTGGCTTCATTGTGCAAGATATGCCCAATGGTTACTCCAAGGTGACTTGGATAGAACATTCAGAATATAATGAGAGTGGCATTCACCAGCTGTTACAGCCATTACTACGTTCTGGTATTGGCTTTGGTGCACAGAGGTGGCTTGCTACTCTCCAGAGGGAATGCGAGTCCCTGACTTTCCTCATGTCCTCTACCAATCCTAATGAAGTTCCTAGAGGGTTAAGTATGAATTCAAAGAAAAGCATGCTTAGGTTGGCACAGCGTATGATGCAAAGCTTTTGTTCTGGGGTTTGTGGCTCATCAGTGCGCCAGTGGGACAAATTCTGTATTGATAATGTTACTGACAACGTGAGGGTTATGGTGCGTCAGAGTTTGGAGGTCGGTGAGCCATCTGGCTTCGTGTTGAGTGCTGCAACATCTGTTTGGATGCCGGTATCAAGGTCAAGGCTGTTTGATTTCTTGCGAGACTGGCAATTAAGGGGGCAGTGGGACATTTTGGTCAGCTGTCGTCCACTGCAAGCCATGGCTCAGATTGACAAGGATCACGGAGGTGGCAACAGTGTTTCTCTCTTTAGTGCCAAGGGTCTTGATGCAAATAACAATAATAACATGCTGATGTTCCAAGAGACTAGGACGGACGCTTCAGGGTCAATAGTTGTGTATGCACCGATCACTTCAACAAGTTCAGATATCATGAGGGATGTCGTGTACGAGGGTGGAGATTCTACTTATGTAGAACTCTTACCATCAGGATTTGCAATCCTTCCTTGTGTTACTTCTGACCATGTCAAAGGAGAAGGAAACGGCTCTGATGACGGGGGATGTCTGCTGACAGTTGGATTCCAAATTGTGTGTGATGGTGGCCAACCAACATCCAAGCTCACTATGCACTCGGTTAAGACTATTATTGATCTCATCTCCTCCACCATTCAGAAGATCAAAAGTGCCCTTCAAATAAATGATGGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

750

Amino Acids

82.86

Weight (kDa)

6.94

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	72 - 110	1.4e-13	Homeodomain
START	PF01852	266 - 483	5.7e-44	START domain
PDF2_C	PF25797	503 - 745	6.5e-78	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005198)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130
malus_domestica	MD01G1198100.v1.1 MD07G1266200.v1.1
prunus_persica	Prupe.2G291400_v2.0.a1
pyrus_communis	pycom01g20820 pycom07g24390
rosa_chinensis	RchiOBHm_Chr1g0376881
rosa_laevigata	RLG00000026562
rosa_multiflora	Rmu_co8045660.1_g000001 Rmu_sc0002113.1_g000002 Rmu_ssc0000125.1_g000012
rosa_roxburghii	Rroxscaffold_4G00281650
rosa_rugosa	Rorug01G0399300 Rorug01G0399400 Rorug01G0399500 Rorug01G0399600 Rorug01G0399600
rosa_samantha	Rh1AG416600 Rh1BG375800 Rh1CG389600 Rh1DG406400
rosa_wichuraiana	Rw1G036550 Rw3G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1778
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	588
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	3 cut(s)	586, 1086, 1183
AclWI	GGATC	1 cut(s)	1830
AcoI	YGGCCR	4 cut(s)	46, 460, 576, 2143
AcsI	RAATTY	4 cut(s)	465, 528, 1510, 1601
AcuI	CTGAAG	2 cut(s)	1193, 1908
AfaI	GTAC	5 cut(s)	535, 905, 928, 1111, 1991
AfiI	CCNNNNNNNGG	5 cut(s)	99, 625, 746, 855, 1048
AflIII	ACRYGT	1 cut(s)	784
AgeI	ACCGGT	1 cut(s)	739
AjnI	CCWGG	4 cut(s)	457, 618, 792, 929
AleI	CACNNNNGTG	3 cut(s)	438, 1417, 1830
AloI	GAACNNNNNNTCC	2 cut(s)	850, 882
Alw21I	GWGCWC	1 cut(s)	1414
Alw26I	GTCTC	4 cut(s)	275, 998, 1740, 1901
Alw44I	GTGCAC	1 cut(s)	1410
AlwI	GGATC	1 cut(s)	1830
AoxI	GGCC	8 cut(s)	46, 445, 460, 560, 576, 1087, 2143, 2245
ApaLI	GTGCAC	1 cut(s)	1410
ApeKI	GCWGC	4 cut(s)	663, 766, 1195, 1691
ApoI	RAATTY	4 cut(s)	465, 528, 1510, 1601
AsiGI	ACCGGT	1 cut(s)	739
AspLEI	GCGC	3 cut(s)	345, 544, 1590
AspS9I	GGNCC	6 cut(s)	256, 446, 561, 616, 1088, 2246
AsuHPI	GGTGA	5 cut(s)	25, 988, 1336, 1358, 1676
AvaII	GGWCC	2 cut(s)	256, 616
BaeGI	GKGCMC	2 cut(s)	1414, 2230
BalI	TGGCCA	3 cut(s)	462, 578, 2145
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	1414
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	675, 778, 1207, 1678
BceAI	ACGGC	1 cut(s)	2101
BciT130I	CCWGG	4 cut(s)	459, 620, 794, 931
BclI	TGATCA	2 cut(s)	18, 978
BcoDI	GTCTC	4 cut(s)	275, 998, 1740, 1901
BfaI	CTAG	3 cut(s)	1056, 1494, 1911
BfoI	RGCGCY	1 cut(s)	346
BisI	GCNGC	5 cut(s)	664, 767, 1087, 1196, 1692
BlsI	GCNGC	5 cut(s)	665, 768, 1088, 1197, 1693
Bme1390I	CCNGG	4 cut(s)	459, 620, 794, 931
Bme18I	GGWCC	2 cut(s)	256, 616
BmgT120I	GGNCC	6 cut(s)	256, 446, 561, 616, 1088, 2246
BmiI	GGNNCC	3 cut(s)	305, 1099, 1158
BmrFI	CCNGG	4 cut(s)	459, 620, 794, 931
BmsI	GCATC	9 cut(s)	16, 714, 943, 1006, 1113, 1240, 1539, 1698, 1861
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	4 cut(s)	359, 678, 815, 1418
Bpu10I	CCTNAGC	2 cut(s)	260, 1529
Bsa29I	ATCGAT	1 cut(s)	1024
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaJI	CCNNGG	4 cut(s)	49, 1320, 1803, 1860
BsaWI	WCCGGW	2 cut(s)	10, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 625, 746, 855, 1048
Bse118I	RCCGGY	2 cut(s)	739, 1711
Bse1I	ACTGG	6 cut(s)	104, 342, 1160, 1257, 1591, 1754
Bse3DI	GCAATG	1 cut(s)	630
Bse8I	GATNNNNATC	1 cut(s)	1020
BseBI	CCWGG	4 cut(s)	459, 620, 794, 931
BseCI	ATCGAT	1 cut(s)	1024
BseDI	CCNNGG	4 cut(s)	49, 1320, 1803, 1860
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	5 cut(s)	99, 625, 746, 855, 1048
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	5 cut(s)	274, 381, 479, 512, 1823
BseNI	ACTGG	6 cut(s)	104, 342, 1160, 1257, 1591, 1754
BseRI	GAGGAG	1 cut(s)	2191
BseSI	GKGCMC	2 cut(s)	1414, 2230
BseXI	GCAGC	4 cut(s)	675, 778, 1207, 1678
BseYI	CCCAGC	1 cut(s)	82
BshFI	GGCC	8 cut(s)	48, 447, 462, 562, 578, 1089, 2145, 2247
BshTI	ACCGGT	1 cut(s)	739
BshVI	ATCGAT	1 cut(s)	1024
BsiHKAI	GWGCWC	1 cut(s)	1414
BsiSI	CCGG	4 cut(s)	11, 740, 1270, 1712
BslFI	GGGAC	3 cut(s)	1435, 1610, 1784
BslI	CCNNNNNNNGG	5 cut(s)	99, 625, 746, 855, 1048
BsmAI	GTCTC	4 cut(s)	275, 998, 1740, 1901
BsmFI	GGGAC	3 cut(s)	1435, 1610, 1784
BsmI	GAATGC	5 cut(s)	230, 505, 756, 1362, 1448
BsnI	GGCC	8 cut(s)	48, 447, 462, 562, 578, 1089, 2145, 2247
Bsp1286I	GDGCHC	2 cut(s)	1414, 2230
Bsp1407I	TGTACA	1 cut(s)	903
Bsp143I	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
Bsp19I	CCATGG	1 cut(s)	1803
BspACI	CCGC	3 cut(s)	586, 1086, 1183
BspANI	GGCC	8 cut(s)	48, 447, 462, 562, 578, 1089, 2145, 2247
BspCNI	CTCAG	5 cut(s)	273, 382, 480, 513, 1822
BspDI	ATCGAT	1 cut(s)	1024
BspHI	TCATGA	1 cut(s)	1974
BspLI	GGNNCC	3 cut(s)	305, 1099, 1158
BspPI	GGATC	1 cut(s)	1830
BsrBI	CCGCTC	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	630
BsrFI	RCCGGY	2 cut(s)	739, 1711
BsrGI	TGTACA	1 cut(s)	903
BsrI	ACTGG	6 cut(s)	104, 342, 1160, 1257, 1591, 1754
BssAI	RCCGGY	2 cut(s)	739, 1711
BssECI	CCNNGG	4 cut(s)	49, 1320, 1803, 1860
BssMI	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
BssT1I	CCWWGG	3 cut(s)	1320, 1803, 1860
Bst2UI	CCWGG	4 cut(s)	459, 620, 794, 931
Bst4CI	ACNGT	3 cut(s)	440, 1841, 2116
Bst6I	CTCTTC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	1303
BstAUI	TGTACA	1 cut(s)	903
BstC8I	GCNNGC	7 cut(s)	560, 801, 1128, 1200, 1425, 1526, 1800
BstDEI	CTNAG	8 cut(s)	260, 285, 362, 390, 488, 521, 1529, 1809
BstDSI	CCRYGG	2 cut(s)	49, 1803
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	3 cut(s)	345, 544, 1590
BstKTI	GATC	7 cut(s)	21, 45, 981, 1825, 1953, 2194, 2220
BstMAI	GTCTC	4 cut(s)	275, 998, 1740, 1901
BstMBI	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
BstNI	CCWGG	4 cut(s)	459, 620, 794, 931
BstNSI	RCATGY	6 cut(s)	773, 788, 1130, 1202, 1528, 1894
BstSCI	CCNGG	4 cut(s)	457, 618, 792, 929
BstSLI	GKGCMC	2 cut(s)	1414, 2230
BstV1I	GCAGC	4 cut(s)	675, 778, 1207, 1678
BstV2I	GAAGAC	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	440
Bsu15I	ATCGAT	1 cut(s)	1024
BsuRI	GGCC	8 cut(s)	48, 447, 462, 562, 578, 1089, 2145, 2247
BsuTUI	ATCGAT	1 cut(s)	1024
BtgI	CCRYGG	2 cut(s)	49, 1803
BtsI	GCAGTG	2 cut(s)	1772, 1793
BtsIMutI	CAGTG	6 cut(s)	1264, 1590, 1598, 1772, 1793, 1846
Cac8I	GCNNGC	7 cut(s)	560, 801, 1128, 1200, 1425, 1526, 1800
CciI	TCATGA	1 cut(s)	1974
CfoI	GCGC	3 cut(s)	345, 544, 1590
Cfr10I	RCCGGY	2 cut(s)	739, 1711
Cfr13I	GGNCC	6 cut(s)	256, 446, 561, 616, 1088, 2246
ClaI	ATCGAT	1 cut(s)	1024
CseI	GACGC	2 cut(s)	1634, 1928
Csp6I	GTAC	5 cut(s)	534, 904, 927, 1110, 1990
CspAI	ACCGGT	1 cut(s)	739
CviQI	GTAC	5 cut(s)	534, 904, 927, 1110, 1990
DdeI	CTNAG	8 cut(s)	260, 285, 362, 390, 488, 521, 1529, 1809
DpnI	GATC	7 cut(s)	20, 44, 980, 1824, 1952, 2193, 2219
DpnII	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
DrdI	GACNNNNNNGTC	1 cut(s)	1778
DseDI	GACNNNNNNGTC	1 cut(s)	1778
EaeI	YGGCCR	4 cut(s)	46, 460, 576, 2143
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	3 cut(s)	1320, 1803, 1860
Eco32I	GATATC	1 cut(s)	1972
Eco47I	GGWCC	2 cut(s)	256, 616
Eco57I	CTGAAG	2 cut(s)	1193, 1908
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	1510
EcoRII	CCWGG	4 cut(s)	457, 618, 792, 929
EcoRV	GATATC	1 cut(s)	1972
EcoT14I	CCWWGG	3 cut(s)	1320, 1803, 1860
EcoT22I	ATGCAT	1 cut(s)	1128
ErhI	CCWWGG	3 cut(s)	1320, 1803, 1860
FalI	AAGNNNNNCTT	2 cut(s)	952, 984
FaqI	GGGAC	3 cut(s)	1435, 1610, 1784
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	2 cut(s)	18, 978
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	5 cut(s)	664, 767, 1087, 1196, 1692
Fsp4HI	GCNGC	5 cut(s)	664, 767, 1087, 1196, 1692
FspBI	CTAG	3 cut(s)	1056, 1494, 1911
GlaI	GCGC	3 cut(s)	344, 543, 1589
GluI	GCNGC	5 cut(s)	664, 767, 1087, 1196, 1692
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	4 cut(s)	359, 678, 815, 1418
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	8 cut(s)	48, 447, 462, 562, 578, 1089, 2145, 2247
HapII	CCGG	4 cut(s)	11, 740, 1270, 1712
HgaI	GACGC	2 cut(s)	1634, 1928
HhaI	GCGC	3 cut(s)	345, 544, 1590
Hin6I	GCGC	3 cut(s)	343, 542, 1588
HinP1I	GCGC	3 cut(s)	343, 542, 1588
HincII	GTYRAC	2 cut(s)	33, 1237
HindII	GTYRAC	2 cut(s)	33, 1237
HindIII	AAGCTT	1 cut(s)	1555
HinfI	GANTC	8 cut(s)	103, 331, 523, 965, 1021, 1448, 2003, 2121
HpaII	CCGG	4 cut(s)	11, 740, 1270, 1712
HphI	GGTGA	5 cut(s)	25, 988, 1336, 1358, 1676
Hpy166II	GTNNAC	6 cut(s)	33, 790, 1237, 1412, 1793, 1990
Hpy188III	TCNNGA	9 cut(s)	22, 193, 236, 307, 614, 1435, 1868, 1975, 2031
Hpy8I	GTNNAC	6 cut(s)	33, 790, 1237, 1412, 1793, 1990
Hpy99I	CGWCG	3 cut(s)	37, 718, 1226
HpyAV	CCTTC	5 cut(s)	400, 1290, 2054, 2072, 2240
HpyCH4III	ACNGT	3 cut(s)	440, 1841, 2116
HpyCH4IV	ACGT	3 cut(s)	894, 1390, 1629
HpyF3I	CTNAG	8 cut(s)	260, 285, 362, 390, 488, 521, 1529, 1809
HpySE526I	ACGT	3 cut(s)	894, 1390, 1629
HspAI	GCGC	3 cut(s)	343, 542, 1588
Ksp22I	TGATCA	2 cut(s)	18, 978
Kzo9I	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
LmnI	GCTCC	4 cut(s)	340, 387, 796, 898
Lsp1109I	GCAGC	4 cut(s)	675, 778, 1207, 1678
LweI	GCATC	9 cut(s)	16, 714, 943, 1006, 1113, 1240, 1539, 1698, 1861
MaeI	CTAG	3 cut(s)	1056, 1494, 1911
MaeII	ACGT	3 cut(s)	894, 1390, 1629
MaeIII	GTNAC	6 cut(s)	772, 1313, 1324, 1374, 1618, 2053
MalI	GATC	7 cut(s)	20, 44, 980, 1824, 1952, 2193, 2219
MbiI	CCGCTC	1 cut(s)	588
MboI	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
MboII	GAAGA	6 cut(s)	69, 72, 327, 340, 584, 2227
MhlI	GDGCHC	2 cut(s)	1414, 2230
MlsI	TGGCCA	3 cut(s)	462, 578, 2145
MluCI	AATT	9 cut(s)	357, 465, 528, 761, 821, 1510, 1601, 1754, 2127
MluNI	TGGCCA	3 cut(s)	462, 578, 2145
MlyI	GAGTC	3 cut(s)	325, 532, 1457
MmeI	TCCRAC	3 cut(s)	234, 685, 2098
Mox20I	TGGCCA	3 cut(s)	462, 578, 2145
Mph1103I	ATGCAT	1 cut(s)	1128
MscI	TGGCCA	3 cut(s)	462, 578, 2145
MseI	TTAA	5 cut(s)	219, 984, 1502, 1757, 2178
MslI	CAYNNNNRTG	6 cut(s)	237, 438, 1073, 1417, 1830, 1895
Msp20I	TGGCCA	3 cut(s)	462, 578, 2145
MspA1I	CMGCKG	3 cut(s)	1086, 1372, 1785
MspI	CCGG	4 cut(s)	11, 740, 1270, 1712
MspR9I	CCNGG	4 cut(s)	459, 620, 794, 931
Mva1269I	GAATGC	5 cut(s)	230, 505, 756, 1362, 1448
MvaI	CCWGG	4 cut(s)	459, 620, 794, 931
NcoI	CCATGG	1 cut(s)	1803
NdeII	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
NlaIV	GGNNCC	3 cut(s)	305, 1099, 1158
NmeAIII	GCCGAG	1 cut(s)	1156
NmuCI	GTSAC	2 cut(s)	772, 1324
NsiI	ATGCAT	1 cut(s)	1128
NspI	RCATGY	6 cut(s)	773, 788, 1130, 1202, 1528, 1894
OliI	CACNNNNGTG	3 cut(s)	438, 1417, 1830
PaeI	GCATGC	3 cut(s)	1130, 1202, 1528
PagI	TCATGA	1 cut(s)	1974
PciI	ACATGT	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	1 cut(s)	1230
PctI	GAATGC	5 cut(s)	230, 505, 756, 1362, 1448
PfeI	GAWTC	5 cut(s)	103, 965, 1021, 2003, 2121
PflFI	GACNNNGTC	2 cut(s)	28, 2066
PflMI	CCANNNNNTGG	1 cut(s)	99
PinAI	ACCGGT	1 cut(s)	739
PkrI	GCNGC	5 cut(s)	665, 768, 1088, 1197, 1693
PleI	GAGTC	3 cut(s)	325, 531, 1456
PpsI	GAGTC	3 cut(s)	325, 531, 1456
PscI	ACATGT	1 cut(s)	784
Psp6I	CCWGG	4 cut(s)	457, 618, 792, 929
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	4 cut(s)	457, 618, 792, 929
PspN4I	GGNNCC	3 cut(s)	305, 1099, 1158
PspPI	GGNCC	6 cut(s)	256, 446, 561, 616, 1088, 2246
PsyI	GACNNNGTC	2 cut(s)	28, 2066
PvuII	CAGCTG	2 cut(s)	1372, 1785
RsaI	GTAC	5 cut(s)	535, 905, 928, 1111, 1991
RsaNI	GTAC	5 cut(s)	534, 904, 927, 1110, 1990
RseI	CAYNNNNRTG	6 cut(s)	237, 438, 1073, 1417, 1830, 1895
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	5 cut(s)	219, 984, 1502, 1757, 2178
SatI	GCNGC	5 cut(s)	664, 767, 1087, 1196, 1692
Sau3AI	GATC	7 cut(s)	18, 42, 978, 1822, 1950, 2191, 2217
Sau96I	GGNCC	6 cut(s)	256, 446, 561, 616, 1088, 2246
SchI	GAGTC	3 cut(s)	325, 532, 1457
ScrFI	CCNGG	4 cut(s)	459, 620, 794, 931
SduI	GDGCHC	2 cut(s)	1414, 2230
SfaNI	GCATC	9 cut(s)	16, 714, 943, 1006, 1113, 1240, 1539, 1698, 1861
SinI	GGWCC	2 cut(s)	256, 616
SmiMI	CAYNNNNRTG	6 cut(s)	237, 438, 1073, 1417, 1830, 1895
SphI	GCATGC	3 cut(s)	1130, 1202, 1528
Sse9I	AATT	9 cut(s)	357, 465, 528, 761, 821, 1510, 1601, 1754, 2127
SsiI	CCGC	3 cut(s)	586, 1086, 1183
SspMI	CTAG	3 cut(s)	1056, 1494, 1911
StyD4I	CCNGG	4 cut(s)	457, 618, 792, 929
StyI	CCWWGG	3 cut(s)	1320, 1803, 1860
TaaI	ACNGT	3 cut(s)	440, 1841, 2116
TaiI	ACGT	3 cut(s)	897, 1393, 1632
TaqI	TCGA	7 cut(s)	32, 505, 526, 677, 687, 1024, 1224
TasI	AATT	9 cut(s)	357, 465, 528, 761, 821, 1510, 1601, 1754, 2127
TatI	WGTACW	2 cut(s)	533, 903
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	5 cut(s)	103, 965, 1021, 2003, 2121
Tru1I	TTAA	5 cut(s)	219, 984, 1502, 1757, 2178
Tru9I	TTAA	5 cut(s)	219, 984, 1502, 1757, 2178
TscAI	CASTG	6 cut(s)	1264, 1590, 1598, 1772, 1800, 1846
TseFI	GTSAC	2 cut(s)	772, 1324
TseI	GCWGC	4 cut(s)	663, 766, 1195, 1691
Tsp45I	GTSAC	2 cut(s)	772, 1324
TspGWI	ACGGA	6 cut(s)	66, 1110, 1154, 1222, 1842, 1931
TspRI	CASTG	6 cut(s)	1264, 1590, 1598, 1772, 1800, 1846
Tth111I	GACNNNGTC	2 cut(s)	28, 2066
Van91I	CCANNNNNTGG	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	1410
VpaK11BI	GGWCC	2 cut(s)	256, 616
XapI	RAATTY	4 cut(s)	465, 528, 1510, 1601
XceI	RCATGY	6 cut(s)	773, 788, 1130, 1202, 1528, 1894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	3 cut(s)	1056, 1494, 1911
Zsp2I	ATGCAT	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.