Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005198

Physical Location & Seq

Genomic Coordinates Reverse (-)

3866596 .. 3872319

Gene Structure 5724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGAATTTTGGAGGTTTGATCAGTAATACTGGAGGTGTTGGGGGTTCAAGAGTTGTGGCTGAGATTGATCCACACAGCAGTGGTGGTGCCATTGCTCAACCACACTTTATTCCCAATTCAATGCAGACTTCCTCTGCCCTCTCTCTTTCAATAGTGCAGAAAAACATGGATGGGCACAATGAACTTGACCTGATTGCTGAGAGTTTCGACCCCGGGATTATTGGGAGGTTGAGGGAAGAGGAGTTTGACCAGAGCCGGTCAGGCAGTGACCATTTTGATGGGGCATCCGGTGATGATCAAGATCCTGTCGACGAGGATGATCGGCCACGGAGGAAGAAGAAGTATCATCGTCATACCCCCAGCCAAATCCAAGAACTGGAATCTTTCTTTAAGGAATGCCCACATCCTGATGAAAAGCAAAGGTTGGACCTCAGCAGGAGGCTTGGCTTGGAGACTAAGCAAGTCAAGTTTTGGTTCCAGAATAGAAGAACTCAAATGAAGACTCAACTGGAGCGCCATGAGAATATAATTCTTAGGCAAGAGAATGACAAGCTCCGAGCTGAGAATGGTGTGATGAAGGAAGCTATGTCAAATCCAATATGCCACAACTGTGGAGGCCCTGCCATTCCTGGCCAAATTTCATTTGATGAACACCAACTGAGGATTGAGAATGCTCGACTGAATGATGAACTGAGTCGAATTTGTACTTTGGCGCAAAAGTTCTTGGGCAGGCCCATTTCAAACTTGGCCGCTCCCCGCTCTCTTCCAAGCTCAACTGCTGGTCTGGACCTGGCAATGGGAATAAATGGGTTGGGTTGTTTGAATGCTGGAGGCAGCAATCAGTTGTCGACGGGGTTCGAGTTGGGAGATGGTGTTGGAAGCTCGTCGCCTGTGATGCCTCTAATGAAACCAGTTATGGGAATGCCAAATGAATTGCAGCATGTGACTGAAAGACATGTTTACCTGGAGCTTGCAGGGGAAGCTATGGATGAATTGGTTAGGATGGTTCAAGCAGATACCCCTTTGTGGATGAAAAGTTCAGATGGTGGAAGCGAAACATTGAACGTGGAGCTGTACAGGACATTTTCTTGTATCAGTACCAGGCAAAGTGGCTTGGTGACTGATGCTTCAAGGGATTCTTGTATGGTGATCATAAACAGCTTGGCTCTTGTAGAGACTATGATGGACGCGAATCGATGGACAGATATGTTCCCTACTTTGGTTGCTAGAGCCTCCACCATTGGCATGATTTCCAGCGGCCCAAATGGAACCAGAAATGGTACTATTCAAATGATGCATGCCGAGCTTCAAATGCTTTCGCCATTGGTTCCAGTCCGTCCGCTGAAGTTCCTCCGTTTTTCCAAGCAGCATGCAGAGGGTGTGTGGGCTGTCGTCGATGTTTCCATTGACATCCAGCAAGATGCTTCCAGTGTGAACTGCCGGAGGCTTCCTTCTGGCTTCATTGTGCAAGATATGCCCAATGGTTACTCCAAGGTGACTTGGATAGAACATTCAGAATATAATGAGAGTCGTGTTCACCAACTGTTACAGCCATTACTACGTTCTGGTATTGGCTTTGGTGCACAGAGATGGCTTGCTACTCTCCAGAGGGAATGTGAGTCCCTGACTTTCCTCATGTCCTCTACCAATCCTAATGAAGTTCCTAGAGGGTTAAGTATGAATTCAAAGAAAAGCATGCTAAGGTTGGCACAGCGGATGATGCAAAGCTTTTGTTCTGGGGTTTGTGGCTCATCAGTGCGCCAGTGGGACAAACTCTGTATTGATAATGTTAGTGACAACGTGAGGGTAATGGTGCGTCAGAGTTTGGAGGTCGGTGAGCCATCTGGCTTCGTGTTGAGTGCTGCAACATCTGTTTGGATGCCAGTATCAAGGTCAAGGCTGTTTGATTTCTTGCGAGACTGGCAATTAAGGGGGCAGTGGGACATTTTGGTCAGCTGTCGTCCACTGCAAGCCATGGTTCAGGTTGACAAGGATCACGGAGGTGGCAACAGTGTTTCTCTCTTTAATGCCAAGGGTCTTGATGCCAATAACAATAATAACATGCTGATGTTCCAAGAGACTAGGACGGATGCTTCAGGGTCAATAGTTGTGTATGCACCGATCACTTCAACAAGTTCAGATATCATGAGGGATGTTGTGTACGAGGGTGGAGATTCTACTTATGTAGAACTCTTACCATCAGGATTTGCAATCCTTCCTTGTGTTACTTCTGACCATGTCAAAGGAGAAGGAAATGGCTCTGATGATGGGGGATGTCTGCTGACAGTTGGATTTCAAATTGTGTGTGATGGTGGCCAACCAACATCCAAGCTCACTATGCACTCGGTTAAGACTATCATTGATCTCATCTCCTCCACCATTCAGAAGATCAAAAGTGCCCTTCAAATAAATGATGGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

807

Amino Acids

88.8

Weight (kDa)

5.69

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	112 - 167	9.8e-20	Homeodomain
START	PF01852	323 - 540	8.3e-44	START domain
PDF2_C	PF25797	560 - 802	1.1e-77	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005198)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130
malus_domestica	MD01G1198100.v1.1 MD07G1266200.v1.1
prunus_persica	Prupe.2G291400_v2.0.a1
pyrus_communis	pycom01g20820 pycom07g24390
rosa_chinensis	RchiOBHm_Chr1g0376881
rosa_laevigata	RLG00000026562
rosa_multiflora	Rmu_co8045660.1_g000001 Rmu_sc0002113.1_g000002 Rmu_ssc0000125.1_g000012
rosa_roxburghii	Rroxscaffold_4G00281650
rosa_rugosa	Rorug01G0399300 Rorug01G0399400 Rorug01G0399500 Rorug01G0399600 Rorug01G0399600
rosa_samantha	Rh1AG416600 Rh1BG375800 Rh1CG389600 Rh1DG406400
rosa_wichuraiana	Rw1G036550 Rw3G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1949
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccBSI	CCGCTC	2 cut(s)	752, 759
AccI	GTMKAC	2 cut(s)	309, 848
AccII	CGCG	1 cut(s)	1190
AciI	CCGC	5 cut(s)	750, 757, 1257, 1340, 1714
AclWI	GGATC	3 cut(s)	62, 296, 2001
AcoI	YGGCCR	4 cut(s)	323, 631, 747, 2314
AcsI	RAATTY	4 cut(s)	4, 636, 699, 1681
AcuI	CTGAAG	2 cut(s)	1364, 2079
AfaI	GTAC	5 cut(s)	706, 1076, 1099, 1282, 2162
AfiI	CCNNNNNNNGG	5 cut(s)	376, 796, 917, 1026, 1219
AflIII	ACRYGT	1 cut(s)	955
AjnI	CCWGG	4 cut(s)	628, 789, 963, 1100
AleI	CACNNNNGTG	3 cut(s)	78, 609, 2001
AloI	GAACNNNNNNTCC	2 cut(s)	1021, 1053
Alw21I	GWGCWC	1 cut(s)	1585
Alw26I	GTCTC	4 cut(s)	446, 1169, 1911, 2072
Alw44I	GTGCAC	1 cut(s)	1581
AlwI	GGATC	3 cut(s)	62, 296, 2001
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	8 cut(s)	323, 616, 631, 731, 747, 1258, 2314, 2416
ApaLI	GTGCAC	1 cut(s)	1581
ApeKI	GCWGC	4 cut(s)	834, 937, 1366, 1862
ApoI	RAATTY	4 cut(s)	4, 636, 699, 1681
AspLEI	GCGC	3 cut(s)	516, 715, 1761
AspS9I	GGNCC	6 cut(s)	427, 617, 732, 787, 1259, 2417
AsuC2I	CCSGG	2 cut(s)	213, 214
AsuHPI	GGTGA	6 cut(s)	302, 1129, 1159, 1507, 1529, 1847
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	427, 787
BaeGI	GKGCMC	3 cut(s)	177, 1585, 2401
BalI	TGGCCA	2 cut(s)	633, 2316
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	1585
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	4 cut(s)	846, 949, 1378, 1849
BciT130I	CCWGG	4 cut(s)	630, 791, 965, 1102
BclI	TGATCA	3 cut(s)	18, 295, 1149
BcnI	CCSGG	2 cut(s)	213, 214
BcoDI	GTCTC	4 cut(s)	446, 1169, 1911, 2072
BfaI	CTAG	3 cut(s)	1227, 1665, 2082
BfoI	RGCGCY	1 cut(s)	517
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	6 cut(s)	750, 835, 938, 1258, 1367, 1863
BlsI	GCNGC	6 cut(s)	751, 836, 939, 1259, 1368, 1864
Bme1390I	CCNGG	6 cut(s)	213, 214, 630, 791, 965, 1102
Bme18I	GGWCC	2 cut(s)	427, 787
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	6 cut(s)	427, 617, 732, 787, 1259, 2417
BmiI	GGNNCC	4 cut(s)	88, 476, 1270, 1329
BmrFI	CCNGG	6 cut(s)	213, 214, 630, 791, 965, 1102
BmsI	GCATC	9 cut(s)	293, 885, 1114, 1284, 1411, 1710, 1869, 2032, 2080
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	5 cut(s)	51, 530, 849, 986, 1589
Bpu10I	CCTNAGC	2 cut(s)	431, 1700
BpuMI	CCSGG	2 cut(s)	213, 214
Bsa29I	ATCGAT	1 cut(s)	1195
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	6 cut(s)	211, 212, 326, 1491, 1974, 2031
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	5 cut(s)	376, 796, 917, 1026, 1219
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	9 cut(s)	34, 381, 513, 911, 1331, 1428, 1762, 1883, 1925
Bse3DI	GCAATG	2 cut(s)	90, 801
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	4 cut(s)	630, 791, 965, 1102
BseCI	ATCGAT	1 cut(s)	1195
BseDI	CCNNGG	6 cut(s)	211, 212, 326, 1491, 1974, 2031
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	5 cut(s)	376, 796, 917, 1026, 1219
BseMI	GCAATG	2 cut(s)	90, 801
BseMII	CTCAG	6 cut(s)	51, 189, 445, 552, 650, 683
BseNI	ACTGG	9 cut(s)	34, 381, 513, 911, 1331, 1428, 1762, 1883, 1925
BseRI	GAGGAG	2 cut(s)	254, 2362
BseSI	GKGCMC	3 cut(s)	177, 1585, 2401
BseXI	GCAGC	4 cut(s)	846, 949, 1378, 1849
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	1190
BshFI	GGCC	8 cut(s)	325, 618, 633, 733, 749, 1260, 2316, 2418
BshNI	GGYRCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	1195
BsiHKAI	GWGCWC	1 cut(s)	1585
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	4 cut(s)	213, 256, 288, 1441
BslFI	GGGAC	3 cut(s)	1606, 1781, 1955
BslI	CCNNNNNNNGG	5 cut(s)	376, 796, 917, 1026, 1219
BsmAI	GTCTC	4 cut(s)	446, 1169, 1911, 2072
BsmFI	GGGAC	3 cut(s)	1606, 1781, 1955
BsmI	GAATGC	4 cut(s)	401, 676, 829, 927
BsnI	GGCC	8 cut(s)	325, 618, 633, 733, 749, 1260, 2316, 2418
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	177, 1585, 2401
Bsp1407I	TGTACA	1 cut(s)	1074
Bsp19I	CCATGG	1 cut(s)	1974
BspACI	CCGC	5 cut(s)	750, 757, 1257, 1340, 1714
BspANI	GGCC	8 cut(s)	325, 618, 633, 733, 749, 1260, 2316, 2418
BspCNI	CTCAG	6 cut(s)	52, 190, 444, 553, 651, 684
BspDI	ATCGAT	1 cut(s)	1195
BspFNI	CGCG	1 cut(s)	1190
BspHI	TCATGA	1 cut(s)	2145
BspLI	GGNNCC	4 cut(s)	88, 476, 1270, 1329
BspPI	GGATC	3 cut(s)	62, 296, 2001
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	2 cut(s)	752, 759
BsrDI	GCAATG	2 cut(s)	90, 801
BsrFI	RCCGGY	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	1074
BsrI	ACTGG	9 cut(s)	34, 381, 513, 911, 1331, 1428, 1762, 1883, 1925
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	6 cut(s)	211, 212, 326, 1491, 1974, 2031
BssT1I	CCWWGG	3 cut(s)	1491, 1974, 2031
Bst2UI	CCWGG	4 cut(s)	630, 791, 965, 1102
Bst4CI	ACNGT	4 cut(s)	611, 1545, 2012, 2287
Bst6I	CTCTTC	2 cut(s)	231, 768
BstAPI	GCANNNNNTGC	1 cut(s)	1474
BstAUI	TGTACA	1 cut(s)	1074
BstC8I	GCNNGC	7 cut(s)	731, 972, 1299, 1371, 1596, 1697, 1971
BstDEI	CTNAG	9 cut(s)	60, 198, 431, 456, 533, 561, 659, 692, 1700
BstDSI	CCRYGG	2 cut(s)	326, 1974
BstFNI	CGCG	1 cut(s)	1190
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	3 cut(s)	516, 715, 1761
BstMAI	GTCTC	4 cut(s)	446, 1169, 1911, 2072
BstMWI	GCNNNNNNNGC	9 cut(s)	261, 895, 980, 1303, 1312, 1474, 1720, 1921, 2338
BstNI	CCWGG	4 cut(s)	630, 791, 965, 1102
BstNSI	RCATGY	6 cut(s)	944, 959, 1301, 1373, 1699, 2065
BstSCI	CCNGG	6 cut(s)	211, 212, 628, 789, 963, 1100
BstSLI	GKGCMC	3 cut(s)	177, 1585, 2401
BstUI	CGCG	1 cut(s)	1190
BstV1I	GCAGC	4 cut(s)	846, 949, 1378, 1849
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	2 cut(s)	278, 611
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	1195
BsuRI	GGCC	8 cut(s)	325, 618, 633, 733, 749, 1260, 2316, 2418
BsuTUI	ATCGAT	1 cut(s)	1195
BtgI	CCRYGG	2 cut(s)	326, 1974
BtsI	GCAGTG	4 cut(s)	85, 271, 1943, 1964
BtsIMutI	CAGTG	8 cut(s)	85, 271, 1435, 1761, 1769, 1943, 1964, 2017
Cac8I	GCNNGC	7 cut(s)	731, 972, 1299, 1371, 1596, 1697, 1971
CciI	TCATGA	1 cut(s)	2145
CfoI	GCGC	3 cut(s)	516, 715, 1761
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	6 cut(s)	427, 617, 732, 787, 1259, 2417
Cfr9I	CCCGGG	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	1195
CseI	GACGC	2 cut(s)	1196, 1805
Csp6I	GTAC	5 cut(s)	705, 1075, 1098, 1281, 2161
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviQI	GTAC	5 cut(s)	705, 1075, 1098, 1281, 2161
DdeI	CTNAG	9 cut(s)	60, 198, 431, 456, 533, 561, 659, 692, 1700
DrdI	GACNNNNNNGTC	1 cut(s)	1949
DseDI	GACNNNNNNGTC	1 cut(s)	1949
EaeI	YGGCCR	4 cut(s)	323, 631, 747, 2314
Eam1104I	CTCTTC	2 cut(s)	231, 768
EarI	CTCTTC	2 cut(s)	231, 768
Eco130I	CCWWGG	3 cut(s)	1491, 1974, 2031
Eco32I	GATATC	1 cut(s)	2143
Eco47I	GGWCC	2 cut(s)	427, 787
Eco57I	CTGAAG	2 cut(s)	1364, 2079
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	1681
EcoRII	CCWGG	4 cut(s)	628, 789, 963, 1100
EcoRV	GATATC	1 cut(s)	2143
EcoT14I	CCWWGG	3 cut(s)	1491, 1974, 2031
EcoT22I	ATGCAT	1 cut(s)	1299
ErhI	CCWWGG	3 cut(s)	1491, 1974, 2031
FalI	AAGNNNNNCTT	2 cut(s)	1123, 1155
FaqI	GGGAC	3 cut(s)	1606, 1781, 1955
FauI	CCCGC	1 cut(s)	764
FbaI	TGATCA	3 cut(s)	18, 295, 1149
FblI	GTMKAC	2 cut(s)	309, 848
Fnu4HI	GCNGC	6 cut(s)	750, 835, 938, 1258, 1367, 1863
Fsp4HI	GCNGC	6 cut(s)	750, 835, 938, 1258, 1367, 1863
FspBI	CTAG	3 cut(s)	1227, 1665, 2082
GlaI	GCGC	3 cut(s)	515, 714, 1760
GluI	GCNGC	6 cut(s)	750, 835, 938, 1258, 1367, 1863
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	5 cut(s)	51, 530, 849, 986, 1589
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	8 cut(s)	325, 618, 633, 733, 749, 1260, 2316, 2418
HapII	CCGG	4 cut(s)	213, 256, 288, 1441
HgaI	GACGC	2 cut(s)	1196, 1805
HhaI	GCGC	3 cut(s)	516, 715, 1761
Hin6I	GCGC	3 cut(s)	514, 713, 1759
HinP1I	GCGC	3 cut(s)	514, 713, 1759
HincII	GTYRAC	3 cut(s)	310, 849, 1987
HindII	GTYRAC	3 cut(s)	310, 849, 1987
HindIII	AAGCTT	1 cut(s)	1726
HinfI	GANTC	8 cut(s)	380, 502, 694, 1136, 1192, 1528, 1619, 2174
HpaII	CCGG	4 cut(s)	213, 256, 288, 1441
HphI	GGTGA	6 cut(s)	302, 1129, 1159, 1507, 1529, 1847
Hpy166II	GTNNAC	9 cut(s)	310, 849, 961, 1435, 1537, 1583, 1964, 1987, 2161
Hpy188I	TCNGA	8 cut(s)	557, 1042, 1516, 1821, 2140, 2233, 2263, 2385
Hpy188III	TCNNGA	9 cut(s)	48, 299, 407, 478, 785, 1606, 2039, 2146, 2202
Hpy8I	GTNNAC	9 cut(s)	310, 849, 961, 1435, 1537, 1583, 1964, 1987, 2161
Hpy99I	CGWCG	4 cut(s)	314, 853, 889, 1397
HpyAV	CCTTC	5 cut(s)	571, 1461, 2225, 2243, 2411
HpyCH4III	ACNGT	4 cut(s)	611, 1545, 2012, 2287
HpyCH4IV	ACGT	3 cut(s)	1065, 1561, 1800
HpyF10VI	GCNNNNNNNGC	9 cut(s)	261, 895, 980, 1303, 1312, 1474, 1720, 1921, 2338
HpyF3I	CTNAG	9 cut(s)	60, 198, 431, 456, 533, 561, 659, 692, 1700
HpySE526I	ACGT	3 cut(s)	1065, 1561, 1800
HspAI	GCGC	3 cut(s)	514, 713, 1759
Ksp22I	TGATCA	3 cut(s)	18, 295, 1149
LmnI	GCTCC	5 cut(s)	511, 558, 757, 967, 1069
Lsp1109I	GCAGC	4 cut(s)	846, 949, 1378, 1849
LweI	GCATC	9 cut(s)	293, 885, 1114, 1284, 1411, 1710, 1869, 2032, 2080
MaeI	CTAG	3 cut(s)	1227, 1665, 2082
MaeII	ACGT	3 cut(s)	1065, 1561, 1800
MaeIII	GTNAC	8 cut(s)	266, 943, 1117, 1484, 1495, 1545, 1793, 2224
MbiI	CCGCTC	2 cut(s)	752, 759
MboII	GAAGA	7 cut(s)	248, 346, 349, 498, 511, 755, 2398
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	3 cut(s)	177, 1585, 2401
MlsI	TGGCCA	2 cut(s)	633, 2316
MluNI	TGGCCA	2 cut(s)	633, 2316
MlyI	GAGTC	4 cut(s)	496, 703, 1537, 1628
MmeI	TCCRAC	3 cut(s)	405, 856, 2269
Mox20I	TGGCCA	2 cut(s)	633, 2316
Mph1103I	ATGCAT	1 cut(s)	1299
MscI	TGGCCA	2 cut(s)	633, 2316
MseI	TTAA	5 cut(s)	390, 1673, 1928, 2025, 2349
MslI	CAYNNNNRTG	8 cut(s)	78, 276, 408, 609, 1244, 1588, 2001, 2066
Msp20I	TGGCCA	2 cut(s)	633, 2316
MspA1I	CMGCKG	4 cut(s)	1257, 1342, 1714, 1956
MspI	CCGG	4 cut(s)	213, 256, 288, 1441
MspR9I	CCNGG	6 cut(s)	213, 214, 630, 791, 965, 1102
Mva1269I	GAATGC	4 cut(s)	401, 676, 829, 927
MvaI	CCWGG	4 cut(s)	630, 791, 965, 1102
MvnI	CGCG	1 cut(s)	1190
MwoI	GCNNNNNNNGC	9 cut(s)	261, 895, 980, 1303, 1312, 1474, 1720, 1921, 2338
NciI	CCSGG	2 cut(s)	213, 214
NcoI	CCATGG	1 cut(s)	1974
NlaIV	GGNNCC	4 cut(s)	88, 476, 1270, 1329
NmeAIII	GCCGAG	1 cut(s)	1327
NmuCI	GTSAC	5 cut(s)	266, 943, 1117, 1495, 1793
NsiI	ATGCAT	1 cut(s)	1299
NspI	RCATGY	6 cut(s)	944, 959, 1301, 1373, 1699, 2065
OliI	CACNNNNGTG	3 cut(s)	78, 609, 2001
PaeI	GCATGC	3 cut(s)	1301, 1373, 1699
PagI	TCATGA	1 cut(s)	2145
PciI	ACATGT	1 cut(s)	955
PctI	GAATGC	4 cut(s)	401, 676, 829, 927
PfeI	GAWTC	4 cut(s)	380, 1136, 1192, 2174
PflFI	GACNNNGTC	1 cut(s)	2237
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	6 cut(s)	751, 836, 939, 1259, 1368, 1864
PleI	GAGTC	4 cut(s)	496, 702, 1536, 1627
PpsI	GAGTC	4 cut(s)	496, 702, 1536, 1627
PscI	ACATGT	1 cut(s)	955
Psp6I	CCWGG	4 cut(s)	628, 789, 963, 1100
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	4 cut(s)	628, 789, 963, 1100
PspN4I	GGNNCC	4 cut(s)	88, 476, 1270, 1329
PspPI	GGNCC	6 cut(s)	427, 617, 732, 787, 1259, 2417
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	2237
PvuII	CAGCTG	1 cut(s)	1956
RsaI	GTAC	5 cut(s)	706, 1076, 1099, 1282, 2162
RsaNI	GTAC	5 cut(s)	705, 1075, 1098, 1281, 2161
RseI	CAYNNNNRTG	8 cut(s)	78, 276, 408, 609, 1244, 1588, 2001, 2066
SalI	GTCGAC	2 cut(s)	308, 847
SaqAI	TTAA	5 cut(s)	390, 1673, 1928, 2025, 2349
SatI	GCNGC	6 cut(s)	750, 835, 938, 1258, 1367, 1863
Sau96I	GGNCC	6 cut(s)	427, 617, 732, 787, 1259, 2417
SchI	GAGTC	4 cut(s)	496, 703, 1537, 1628
ScrFI	CCNGG	6 cut(s)	213, 214, 630, 791, 965, 1102
SduI	GDGCHC	3 cut(s)	177, 1585, 2401
SfaNI	GCATC	9 cut(s)	293, 885, 1114, 1284, 1411, 1710, 1869, 2032, 2080
SinI	GGWCC	2 cut(s)	427, 787
SmaI	CCCGGG	1 cut(s)	214
SmiMI	CAYNNNNRTG	8 cut(s)	78, 276, 408, 609, 1244, 1588, 2001, 2066
SphI	GCATGC	3 cut(s)	1301, 1373, 1699
SsiI	CCGC	5 cut(s)	750, 757, 1257, 1340, 1714
SspMI	CTAG	3 cut(s)	1227, 1665, 2082
StyD4I	CCNGG	6 cut(s)	211, 212, 628, 789, 963, 1100
StyI	CCWWGG	3 cut(s)	1491, 1974, 2031
TaaI	ACNGT	4 cut(s)	611, 1545, 2012, 2287
TaiI	ACGT	3 cut(s)	1068, 1564, 1803
TaqI	TCGA	8 cut(s)	207, 309, 676, 697, 848, 858, 1195, 1395
TatI	WGTACW	2 cut(s)	704, 1074
TauI	GCSGC	2 cut(s)	752, 1260
TfiI	GAWTC	4 cut(s)	380, 1136, 1192, 2174
Tru1I	TTAA	5 cut(s)	390, 1673, 1928, 2025, 2349
Tru9I	TTAA	5 cut(s)	390, 1673, 1928, 2025, 2349
TscAI	CASTG	8 cut(s)	85, 271, 1435, 1761, 1769, 1943, 1971, 2017
TseFI	GTSAC	5 cut(s)	266, 943, 1117, 1495, 1793
TseI	GCWGC	4 cut(s)	834, 937, 1366, 1862
Tsp45I	GTSAC	5 cut(s)	266, 943, 1117, 1495, 1793
TspGWI	ACGGA	5 cut(s)	343, 1325, 1343, 2013, 2102
TspMI	CCCGGG	1 cut(s)	212
TspRI	CASTG	8 cut(s)	85, 271, 1435, 1761, 1769, 1943, 1971, 2017
Tth111I	GACNNNGTC	1 cut(s)	2237
Van91I	CCANNNNNTGG	1 cut(s)	376
VneI	GTGCAC	1 cut(s)	1581
VpaK11BI	GGWCC	2 cut(s)	427, 787
XapI	RAATTY	4 cut(s)	4, 636, 699, 1681
XceI	RCATGY	6 cut(s)	944, 959, 1301, 1373, 1699, 2065
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XmaI	CCCGGG	1 cut(s)	212
XmiI	GTMKAC	2 cut(s)	309, 848
XspI	CTAG	3 cut(s)	1227, 1665, 2082
Zsp2I	ATGCAT	1 cut(s)	1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.