Rorug01G0399500

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005198
Physical Location & Seq
Reverse (-)
50794570 .. 50795985
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0399500.1

Sequence Viewer

Length: 657 bp
ATGCCTTCCTCAGTTCAACTCCAGAGAATCAGCTCTCCTAACCCAATAACAACGGCGGCCGCCGCGGCCATCAGCCACAAACAGTCCCAAGCCGTCACGCGCCAGGTCCTTCCTCTGTCCTCACGCGCCGTCAACACACCCGCCATACCGGAGTCGGTGGCCCTCCACCACGCTCACTCGGCTATGGCCTCGCCGGACCAGTGCTGCTCCGCGGTGGTGCAGACCATCGACGCGTCCGTCCCTGCCGTGTGGTCCGTGGTGCGCCGCTTCGACAACCCACAAGCCTACAAGCAGTTCCTAAAGAGCTGTCATGTCATCGGCGGGGACCCGGCCAAGGTCGGCACGCTCCGCGAGGTGCGCGTGGTGTCGGGCCTCCCCGCGGCCTCCAGCACCGAGAGGCTGGAGATTCTTGACGACGAGCGCCACGTGCTCAGCTTCAGCGTCGTCGGTGGGGACCACCGCCTGAGGAACTACCGCTCCGTCACGACACTACACGCCTCCTCAAACGGCACCGGAACCGTCGTCGTAGAGTCGTACGTCGTCGACGTGCCGGCGGGAAACACGAAAGAAGAGACCTGCGTGTTTGTGGATACCATCGTACGTTGTAACTTGCAGTCGTTGGCTCAGGTCGCCGAGAGTATGAGCAAGCCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

218

Amino Acids

23.26

Weight (kDa)

7.08

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 71 - 212 4e-18 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 543
AccII CGCG 8 cut(s) 65, 100, 126, 212, 233, 351, 360, 380
AcoI YGGCCR 3 cut(s) 57, 66, 330
AcuI CTGAAG 1 cut(s) 421
AcvI CACGTG 1 cut(s) 427
AfaI GTAC 2 cut(s) 536, 600
AfiI CCNNNNNNNGG 2 cut(s) 334, 379
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 17
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 461, 493
AluBI AGCT 3 cut(s) 33, 306, 435
AluI AGCT 3 cut(s) 33, 306, 435
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 566
AoxI GGCC 7 cut(s) 57, 66, 159, 186, 330, 370, 381
ApeKI GCWGC 1 cut(s) 204
AspLEI GCGC 5 cut(s) 102, 128, 264, 360, 423
AspS9I GGNCC 7 cut(s) 106, 160, 196, 252, 325, 370, 454
AsuC2I CCSGG 1 cut(s) 329
AvaII GGWCC 5 cut(s) 106, 196, 252, 325, 454
AxyI CCTNAGG 1 cut(s) 464
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BanI GGYRCC 1 cut(s) 509
BbrPI CACGTG 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 77, 233, 602
BceAI ACGGC 5 cut(s) 69, 77, 113, 230, 523
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 583
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 566
BfoI RGCGCY 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 584
BfuI GTATCC 1 cut(s) 583
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
BlpI GCTNAGC 1 cut(s) 431
BlsI GCNGC 7 cut(s) 58, 61, 64, 67, 206, 266, 382
Bme1390I CCNGG 2 cut(s) 104, 329
Bme18I GGWCC 5 cut(s) 106, 196, 252, 325, 454
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 7 cut(s) 106, 160, 196, 252, 325, 370, 454
BmiI GGNNCC 5 cut(s) 326, 327, 455, 511, 517
BmrFI CCNGG 2 cut(s) 104, 329
BpmI CTGGAG 3 cut(s) 5, 370, 422
Bpu10I CCTNAGC 1 cut(s) 624
Bpu1102I GCTNAGC 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 5 cut(s) 63, 210, 255, 333, 378
BsaWI WCCGGW 2 cut(s) 148, 512
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 379
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 5 cut(s) 63, 210, 255, 333, 378
BseLI CCNNNNNNNGG 2 cut(s) 334, 379
BseMII CTCAG 4 cut(s) 24, 445, 455, 638
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 490
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 8 cut(s) 65, 100, 126, 212, 233, 351, 360, 380
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 7 cut(s) 59, 68, 161, 188, 332, 372, 383
BshNI GGYRCC 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
BsiWI CGTACG 2 cut(s) 534, 598
BslFI GGGAC 4 cut(s) 70, 224, 338, 467
BslI CCNNNNNNNGG 2 cut(s) 334, 379
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 4 cut(s) 70, 224, 338, 467
BsnI GGCC 7 cut(s) 59, 68, 161, 188, 332, 372, 383
Bso31I GGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 432
Bsp1720I GCTNAGC 1 cut(s) 431
BspANI GGCC 7 cut(s) 59, 68, 161, 188, 332, 372, 383
BspCNI CTCAG 4 cut(s) 23, 444, 456, 637
BspFNI CGCG 8 cut(s) 65, 100, 126, 212, 233, 351, 360, 380
BspLI GGNNCC 5 cut(s) 326, 327, 455, 511, 517
BspMI ACCTGC 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 5 cut(s) 63, 210, 255, 333, 378
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 84, 520
Bst6I CTCTTC 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 344, 552, 647
BstDEI CTNAG 4 cut(s) 10, 431, 464, 624
BstDSI CCRYGG 4 cut(s) 63, 210, 255, 378
BstFNI CGCG 8 cut(s) 65, 100, 126, 212, 233, 351, 360, 380
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 5 cut(s) 102, 128, 264, 360, 423
BstMAI GTCTC 1 cut(s) 566
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 7 cut(s) 62, 65, 179, 348, 357, 427, 629
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 102, 327
BstUI CGCG 8 cut(s) 65, 100, 126, 212, 233, 351, 360, 380
BstV1I GCAGC 1 cut(s) 191
BstZI CGGCCG 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 464
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 7 cut(s) 59, 68, 161, 188, 332, 372, 383
BtgI CCRYGG 4 cut(s) 63, 210, 255, 378
BtrI CACGTC 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 3 cut(s) 344, 552, 647
CciNI GCGGCCGC 1 cut(s) 57
CfoI GCGC 5 cut(s) 102, 128, 264, 360, 423
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 7 cut(s) 106, 160, 196, 252, 325, 370, 454
Cfr42I CCGCGG 3 cut(s) 66, 213, 381
CseI GACGC 3 cut(s) 222, 239, 430
Csp6I GTAC 2 cut(s) 535, 599
CviAII CATG 1 cut(s) 311
CviQI GTAC 2 cut(s) 535, 599
DdeI CTNAG 4 cut(s) 10, 431, 464, 624
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 3 cut(s) 57, 66, 330
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 5 cut(s) 106, 196, 252, 325, 454
Eco52I CGGCCG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 421
Eco72I CACGTG 1 cut(s) 427
Eco81I CCTNAGG 1 cut(s) 464
EcoO109I RGGNCCY 2 cut(s) 106, 325
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 314
FaiI YATR 4 cut(s) 146, 185, 312, 641
FaqI GGGAC 4 cut(s) 70, 224, 338, 467
FatI CATG 1 cut(s) 310
FauI CCCGC 4 cut(s) 148, 314, 385, 547
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
Fsp4HI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
GlaI GCGC 5 cut(s) 101, 127, 263, 359, 422
GluI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
GsuI CTGGAG 3 cut(s) 5, 370, 422
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 7 cut(s) 59, 68, 161, 188, 332, 372, 383
HapII CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
HgaI GACGC 3 cut(s) 222, 239, 430
HhaI GCGC 5 cut(s) 102, 128, 264, 360, 423
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 5 cut(s) 100, 126, 262, 358, 421
HinP1I GCGC 5 cut(s) 100, 126, 262, 358, 421
HincII GTYRAC 2 cut(s) 133, 544
HindII GTYRAC 2 cut(s) 133, 544
HinfI GANTC 4 cut(s) 27, 152, 406, 530
HpaII CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
Hpy166II GTNNAC 2 cut(s) 133, 544
Hpy188III TCNNGA 3 cut(s) 22, 410, 484
Hpy8I GTNNAC 2 cut(s) 133, 544
Hpy99I CGWCG 9 cut(s) 233, 419, 446, 449, 524, 527, 542, 545, 548
HpyAV CCTTC 2 cut(s) 15, 119
HpyCH4III ACNGT 2 cut(s) 84, 520
HpyCH4IV ACGT 4 cut(s) 426, 537, 546, 601
HpyCH4V TGCA 2 cut(s) 220, 613
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 65, 179, 348, 357, 427, 629
HpyF3I CTNAG 4 cut(s) 10, 431, 464, 624
HpySE526I ACGT 4 cut(s) 426, 537, 546, 601
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 5 cut(s) 100, 126, 262, 358, 421
KflI GGGWCCC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 550
KroNI GCCGGC 1 cut(s) 552
KspI CCGCGG 3 cut(s) 66, 213, 381
LmnI GCTCC 3 cut(s) 212, 351, 482
Lsp1109I GCAGC 1 cut(s) 191
MaeII ACGT 4 cut(s) 426, 537, 546, 601
MaeIII GTNAC 3 cut(s) 94, 481, 605
MbiI CCGCTC 1 cut(s) 477
MboII GAAGA 1 cut(s) 581
MhlI GDGCHC 1 cut(s) 432
MluI ACGCGT 1 cut(s) 231
MlyI GAGTC 2 cut(s) 161, 539
MroNI GCCGGC 1 cut(s) 550
MspA1I CMGCKG 3 cut(s) 65, 212, 380
MspI CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
MspR9I CCNGG 2 cut(s) 104, 329
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 8 cut(s) 65, 100, 126, 212, 233, 351, 360, 380
MwoI GCNNNNNNNGC 7 cut(s) 62, 65, 179, 348, 357, 427, 629
NaeI GCCGGC 1 cut(s) 552
NciI CCSGG 1 cut(s) 329
NgoMIV GCCGGC 1 cut(s) 550
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 5 cut(s) 326, 327, 455, 511, 517
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 94, 481
NotI GCGGCCGC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 423, 543
PdiI GCCGGC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 27, 406
Pfl23II CGTACG 2 cut(s) 534, 598
PkrI GCNGC 7 cut(s) 58, 61, 64, 67, 206, 266, 382
PleI GAGTC 2 cut(s) 160, 538
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
PpsI GAGTC 2 cut(s) 160, 538
Ppu21I YACGTR 1 cut(s) 427
PpuMI RGGWCCY 2 cut(s) 106, 325
Psp5II RGGWCCY 2 cut(s) 106, 325
Psp6I CCWGG 1 cut(s) 102
PspCI CACGTG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 102
PspLI CGTACG 2 cut(s) 534, 598
PspN4I GGNNCC 5 cut(s) 326, 327, 455, 511, 517
PspPI GGNCC 7 cut(s) 106, 160, 196, 252, 325, 370, 454
PspPPI RGGWCCY 2 cut(s) 106, 325
RsaI GTAC 2 cut(s) 536, 600
RsaNI GTAC 2 cut(s) 535, 599
SacII CCGCGG 3 cut(s) 66, 213, 381
SalI GTCGAC 1 cut(s) 542
SatI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
Sau96I GGNCC 7 cut(s) 106, 160, 196, 252, 325, 370, 454
SchI GAGTC 2 cut(s) 161, 539
ScrFI CCNGG 2 cut(s) 104, 329
SduI GDGCHC 1 cut(s) 432
SfiI GGCCNNNNNGGCC 1 cut(s) 65
Sfr303I CCGCGG 3 cut(s) 66, 213, 381
SgrBI CCGCGG 3 cut(s) 66, 213, 381
SgrDI CGTCGACG 1 cut(s) 542
SinI GGWCC 5 cut(s) 106, 196, 252, 325, 454
StyD4I CCNGG 2 cut(s) 102, 327
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 84, 520
TaiI ACGT 4 cut(s) 429, 540, 549, 604
TaqI TCGA 3 cut(s) 228, 270, 543
TauI GCSGC 6 cut(s) 59, 62, 65, 68, 267, 383
TfiI GAWTC 2 cut(s) 27, 406
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 2 cut(s) 94, 481
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 2 cut(s) 94, 481
TspGWI ACGGA 3 cut(s) 226, 244, 469
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 5 cut(s) 106, 196, 252, 325, 454
XmiI GTMKAC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.