Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8045660.1

Orthogroup ID

OG0005198

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 365

Gene Structure 364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8045660.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 364 bp

atgaatcagactcaactggagcgccatgagaatataattcttaggcaagagaatgacaagctccgagctgagaatggtgtgatgaaggaagctatgtcaaatccaatatgccacaactgtggtggccctgccattcctggccaaatttcatttgatgaacaccaactgaggattgagaatgctcgactgaatgatgaactgagtcgaatttgtactttggcacaaaagttcttgggcaggcccatttcaaacttggctgctccccgctctcttccaagctcgactgctcgtctagacctggcgatgggaataaatgggatgggttgtttgaatgctggaggcagcaatcagttgtcgatggggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

121

Amino Acids

13.18

Weight (kDa)

6.82

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005198)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130
malus_domestica	MD01G1198100.v1.1 MD07G1266200.v1.1
prunus_persica	Prupe.2G291400_v2.0.a1
pyrus_communis	pycom01g20820 pycom07g24390
rosa_chinensis	RchiOBHm_Chr1g0376881
rosa_laevigata	RLG00000026562
rosa_multiflora	Rmu_co8045660.1_g000001 Rmu_sc0002113.1_g000002 Rmu_ssc0000125.1_g000012
rosa_roxburghii	Rroxscaffold_4G00281650
rosa_rugosa	Rorug01G0399300 Rorug01G0399400 Rorug01G0399500 Rorug01G0399600 Rorug01G0399600
rosa_samantha	Rh1AG416600 Rh1BG375800 Rh1CG389600 Rh1DG406400
rosa_wichuraiana	Rw1G036550 Rw3G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	144, 207
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	249, 331
AhdI	GACNNNNNGTC	1 cut(s)	288
AjnI	CCWGG	2 cut(s)	136, 297
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	61, 68, 92, 279
AluI	AGCT	4 cut(s)	61, 68, 92, 279
AoxI	GGCC	3 cut(s)	124, 139, 239
ApeKI	GCWGC	2 cut(s)	257, 342
ApoI	RAATTY	2 cut(s)	144, 207
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	125, 240
BalI	TGGCCA	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	244, 354
BccI	CCATC	3 cut(s)	298, 313, 352
BciT130I	CCWGG	2 cut(s)	138, 299
BfaI	CTAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	2 cut(s)	258, 343
BlsI	GCNGC	2 cut(s)	259, 344
Bme1390I	CCNGG	2 cut(s)	138, 299
BmeRI	GACNNNNNGTC	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	125, 240
BmrFI	CCNGG	2 cut(s)	138, 299
BpmI	CTGGAG	2 cut(s)	38, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	138, 299
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	3 cut(s)	60, 158, 191
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	244, 354
BshFI	GGCC	3 cut(s)	126, 141, 241
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmI	GAATGC	2 cut(s)	184, 337
BsnI	GGCC	3 cut(s)	126, 141, 241
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	3 cut(s)	126, 141, 241
BspCNI	CTCAG	3 cut(s)	61, 159, 192
BsrBI	CCGCTC	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	138, 299
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	4 cut(s)	41, 69, 167, 200
BstF5I	GGATG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstNI	CCWGG	2 cut(s)	138, 299
BstSCI	CCNGG	2 cut(s)	136, 297
BstV1I	GCAGC	2 cut(s)	244, 354
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	126, 141, 241
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	125, 240
Csp6I	GTAC	1 cut(s)	213
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	8 cut(s)	61, 68, 92, 126, 141, 241, 257, 279
CviKI_1	RGCY	8 cut(s)	61, 68, 92, 126, 141, 241, 257, 279
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	4 cut(s)	41, 69, 167, 200
DriI	GACNNNNNGTC	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	136, 297
FaeI	CATG	1 cut(s)	29
FaiI	YATR	4 cut(s)	27, 35, 95, 109
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	258, 343
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	258, 343
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	258, 343
GsuI	CTGGAG	2 cut(s)	38, 357
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	3 cut(s)	126, 141, 241
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	4, 10, 202
Hpy188I	TCNGA	2 cut(s)	9, 65
Hpy188III	TCNNGA	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	119
HpyF3I	CTNAG	4 cut(s)	41, 69, 167, 200
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	19, 66, 265
LpnPI	CCDG	8 cut(s)	2, 123, 141, 150, 223, 284, 311, 321
Lsp1109I	GCAGC	2 cut(s)	244, 354
MaeI	CTAG	1 cut(s)	293
MbiI	CCGCTC	1 cut(s)	267
MboII	GAAGA	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	3 cut(s)	36, 144, 207
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	4, 211
MnlI	CCTC	2 cut(s)	162, 332
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	138, 299
Mva1269I	GAATGC	2 cut(s)	184, 337
MvaI	CCWGG	2 cut(s)	138, 299
NlaIII	CATG	1 cut(s)	29
OliI	CACNNNNGTG	1 cut(s)	117
PctI	GAATGC	2 cut(s)	184, 337
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	259, 344
PleI	GAGTC	2 cut(s)	4, 210
PpsI	GAGTC	2 cut(s)	4, 210
Psp6I	CCWGG	2 cut(s)	136, 297
PspGI	CCWGG	2 cut(s)	136, 297
PspPI	GGNCC	2 cut(s)	125, 240
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	2 cut(s)	258, 343
Sau96I	GGNCC	2 cut(s)	125, 240
SchI	GAGTC	2 cut(s)	4, 211
ScrFI	CCNGG	2 cut(s)	138, 299
SetI	ASST	5 cut(s)	63, 70, 94, 281, 300
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	3 cut(s)	36, 144, 207
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	136, 297
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	4 cut(s)	184, 205, 281, 356
TasI	AATT	3 cut(s)	36, 144, 207
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	257, 342
TspDTI	ATGAA	5 cut(s)	17, 98, 138, 171, 210
XapI	RAATTY	2 cut(s)	144, 207
XbaI	TCTAGA	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	2 cut(s)	119, 250
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.