Rorug01G0399300

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000904
Physical Location & Seq
Forward (+)
50775191 .. 50780720
5530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0399300.1

Sequence Viewer

Length: 606 bp
ATGATTTTCAATCACGACCCACCTAGATGTGTTGATTGCTCGGATTGTGGTGGCCCATCACACTGTGGCATGGGTTGTAGTGCTCTTGTAGCAAAAAACACAGGAGGTTATGATGTTTGCACTAACATTGGGCGTGCCTCGAGCATGGACATTAACATAATTGATAAGAACAATCCTCACATTGGTGTCATTGTTAAGATGTCAAGTAATGGCCTAAATGAAAATTGTTCACTCTCTGTGTCTGTAATTTGTGATCCTTATGGATTTCAGGGACCATATTCGTTGGAGAAAACAGGGACATGTAACTATGGTACAGTGCTGAAGCATCCTTCTGGCTGTGCCAAGATTGTACATGTTAGTGGCAAAGGATGGGGCTGGTTTGCCACCTTTCTAATAATAGTCTTGTGCCTTTTTGGAGTGTATCTGTTGGCTGGTGCAGTTTATCGATATTACAGTCTTGGAGTTCGTGGAATAGATATTATACCAAATCTGGACTTTTGGACTGGCTTACCTCATCAAGCACAGAGTGTGTCTGCTTCTTTATTGCACAAATTTAGGGGATCTTCTCAAGGTTATCGAAGCTCCTATTCTCCTGTCAACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

201

Amino Acids

21.61

Weight (kDa)

8.28

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG27 PF09451 22 - 190 1.4e-17 Autophagy-related protein 27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 248, 568
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 341
AdeI CACNNNGTG 2 cut(s) 65, 527
AfaI GTAC 2 cut(s) 313, 351
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 2 cut(s) 299, 352
AgsI TTSAA 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 1 cut(s) 582
AluI AGCT 1 cut(s) 582
Alw21I GWGCWC 1 cut(s) 85
AlwI GGATC 2 cut(s) 248, 568
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 2 cut(s) 52, 211
ApoI RAATTY 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 53, 272
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 2 cut(s) 64, 363
BfaI CTAG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 53, 272
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 552
Bsa29I ATCGAT 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 508
BseCI ATCGAT 1 cut(s) 445
BseGI GGATG 2 cut(s) 325, 374
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 2 cut(s) 54, 213
BshVI ATCGAT 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 139
BslFI GGGAC 2 cut(s) 285, 310
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 285, 310
BsnI GGCC 2 cut(s) 54, 213
BsoBI CYCGRG 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 253, 560
BspANI GGCC 2 cut(s) 54, 213
BspDI ATCGAT 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 248, 568
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 1 cut(s) 508
BssMI GATC 2 cut(s) 253, 560
Bst4CI ACNGT 3 cut(s) 65, 316, 455
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 135
BstF5I GGATG 2 cut(s) 325, 374
BstKTI GATC 2 cut(s) 256, 563
BstMBI GATC 2 cut(s) 253, 560
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 2 cut(s) 303, 356
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
Bsu15I ATCGAT 1 cut(s) 445
BsuRI GGCC 2 cut(s) 54, 213
BsuTUI ATCGAT 1 cut(s) 445
BtsCI GGATG 2 cut(s) 325, 374
BtsIMutI CAGTG 2 cut(s) 61, 321
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 53, 272
ClaI ATCGAT 1 cut(s) 445
Csp6I GTAC 2 cut(s) 312, 350
CviAII CATG 4 cut(s) 70, 145, 300, 353
CviJI RGCY 7 cut(s) 54, 213, 336, 375, 431, 507, 582
CviKI_1 RGCY 7 cut(s) 54, 213, 336, 375, 431, 507, 582
CviQI GTAC 2 cut(s) 312, 350
DpnI GATC 2 cut(s) 255, 562
DpnII GATC 2 cut(s) 253, 560
DraIII CACNNNGTG 2 cut(s) 65, 527
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 139
FaeI CATG 4 cut(s) 73, 148, 303, 356
FaqI GGGAC 2 cut(s) 285, 310
FatI CATG 4 cut(s) 69, 144, 299, 352
FokI GGATG 2 cut(s) 312, 381
FspBI CTAG 1 cut(s) 24
HaeIII GGCC 2 cut(s) 54, 213
Hin1II CATG 4 cut(s) 73, 148, 303, 356
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
Hpy166II GTNNAC 2 cut(s) 230, 598
Hpy188I TCNGA 2 cut(s) 43, 605
Hpy188III TCNNGA 2 cut(s) 14, 491
Hpy8I GTNNAC 2 cut(s) 230, 598
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 3 cut(s) 65, 316, 455
HpyCH4V TGCA 3 cut(s) 120, 437, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Hsp92II CATG 4 cut(s) 73, 148, 303, 356
Kzo9I GATC 2 cut(s) 253, 560
LmnI GCTCC 1 cut(s) 587
LpnPI CCDG 8 cut(s) 87, 254, 279, 318, 361, 417, 476, 489
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 255, 562
MboI GATC 2 cut(s) 253, 560
MboII GAAGA 1 cut(s) 555
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 4 cut(s) 159, 223, 246, 551
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 98, 148, 186, 522
MseI TTAA 2 cut(s) 153, 195
MslI CAYNNNNRTG 3 cut(s) 25, 183, 357
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 253, 560
NlaIII CATG 4 cut(s) 73, 148, 303, 356
NlaIV GGNNCC 1 cut(s) 273
NspI RCATGY 2 cut(s) 303, 356
OliI CACNNNNGTG 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 139
PciI ACATGT 2 cut(s) 299, 352
PscI ACATGT 2 cut(s) 299, 352
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 2 cut(s) 53, 272
PspXI VCTCGAGB 1 cut(s) 139
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 2 cut(s) 313, 351
RsaNI GTAC 2 cut(s) 312, 350
RseI CAYNNNNRTG 3 cut(s) 25, 183, 357
SaqAI TTAA 2 cut(s) 153, 195
Sau3AI GATC 2 cut(s) 253, 560
Sau96I GGNCC 2 cut(s) 53, 272
SduI GDGCHC 1 cut(s) 85
SetI ASST 6 cut(s) 25, 109, 389, 514, 574, 584
SfaNI GCATC 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 139
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 139
SmiMI CAYNNNNRTG 3 cut(s) 25, 183, 357
SmlI CTYRAG 2 cut(s) 139, 567
SmoI CTYRAG 2 cut(s) 139, 567
Sse9I AATT 4 cut(s) 159, 223, 246, 551
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 65, 316, 455
TaqI TCGA 3 cut(s) 140, 445, 577
TasI AATT 4 cut(s) 159, 223, 246, 551
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 2 cut(s) 153, 195
Tru9I TTAA 2 cut(s) 153, 195
TscAI CASTG 2 cut(s) 68, 321
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 2 cut(s) 68, 321
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 551
XceI RCATGY 2 cut(s) 303, 356
XhoI CTCGAG 1 cut(s) 139
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.