Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

34970 .. 35618

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000363.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtcgtcccggcacgtcttcctccgggaaccgctggaggcagccatggttctcacgactaagctttgccgcttcagtggcgccaagatctaccctggtaggggcatcagattcatccactccgattctcaggtttccctgttcataaattttaagtgcaagaggtactttaacaaccgccttaagccatccaagatcacatggactgccatgttcagaaagcagcacaagaaggactatgctcaagaatctgtgaagaagaagcgccgtgccaccaagaagccttactcaaggtccattgttggtgccactttggaggtcatccagaagaggaggactgagaagcctgaggtttgtgatgctgctcgcgaggtcgctctctggtatgcaatgctattatgttttgcttcatttgatgaacttcatagatttgattctaggtgtttttcgacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

151

Amino Acids

17.76

Weight (kDa)

10.21

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 305
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	32, 70, 178
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	100, 101
AflII	CTTAAG	1 cut(s)	182
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	41, 223, 362
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	83, 267
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	2 cut(s)	10, 26
AvaII	GGWCC	1 cut(s)	294
AxyI	CCTNAGG	1 cut(s)	348
BanI	GGYRCC	2 cut(s)	80, 305
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	53, 235, 349
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	2 cut(s)	10, 26
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	2 cut(s)	84, 268
BfrI	CTTAAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	4 cut(s)	42, 70, 224, 363
BlsI	GCNGC	4 cut(s)	43, 71, 225, 364
Bme1390I	CCNGG	3 cut(s)	10, 26, 96
Bme18I	GGWCC	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	3 cut(s)	30, 82, 307
BmrFI	CCNGG	3 cut(s)	10, 26, 96
BmsI	GCATC	2 cut(s)	114, 349
BpiI	GAAGAC	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	228, 274
BpuMI	CCSGG	2 cut(s)	10, 26
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	45, 94
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 101
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	45, 94
BseGI	GGATG	3 cut(s)	114, 188, 321
BseLI	CCNNNNNNNGG	2 cut(s)	100, 101
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	143, 330, 339
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	53, 235, 349
Bsh1236I	CGCG	1 cut(s)	369
BshNI	GGYRCC	2 cut(s)	80, 305
BsiSI	CCGG	2 cut(s)	10, 25
BslI	CCNNNNNNNGG	2 cut(s)	100, 101
Bsp143I	GATC	2 cut(s)	87, 195
Bsp19I	CCATGG	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	3 cut(s)	32, 70, 178
BspCNI	CTCAG	3 cut(s)	142, 331, 340
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	30, 82, 307
BspT107I	GGYRCC	2 cut(s)	80, 305
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	45, 94
BssMI	GATC	2 cut(s)	87, 195
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	323
BstACI	GRCGYC	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	4 cut(s)	60, 129, 339, 348
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	114, 188, 321
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	2 cut(s)	84, 268
BstHHI	GCGC	2 cut(s)	83, 267
BstKTI	GATC	2 cut(s)	90, 198
BstMBI	GATC	2 cut(s)	87, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	3 cut(s)	8, 24, 94
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	53, 235, 349
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	114, 188, 321
BtsIMutI	CAGTG	1 cut(s)	82
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	2 cut(s)	83, 267
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	46, 201, 211
CviJI	RGCY	5 cut(s)	44, 64, 187, 283, 346
CviKI_1	RGCY	5 cut(s)	44, 64, 187, 283, 346
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	60, 129, 339, 348
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	2 cut(s)	89, 197
DpnII	GATC	2 cut(s)	87, 195
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 204, 214
FaiI	YATR	8 cut(s)	47, 146, 202, 212, 240, 387, 400, 426
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	45, 200, 210
Fnu4HI	GCNGC	4 cut(s)	42, 70, 224, 363
FokI	GGATG	3 cut(s)	101, 175, 308
Fsp4HI	GCNGC	4 cut(s)	42, 70, 224, 363
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	2 cut(s)	82, 266
GluI	GCNGC	4 cut(s)	42, 70, 224, 363
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	84, 268
HapII	CCGG	2 cut(s)	10, 25
HhaI	GCGC	2 cut(s)	83, 267
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	49, 204, 214
Hin6I	GCGC	2 cut(s)	81, 265
HinP1I	GCGC	2 cut(s)	81, 265
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	4 cut(s)	111, 125, 248, 434
HpaII	CCGG	2 cut(s)	10, 25
Hpy188I	TCNGA	3 cut(s)	110, 124, 218
Hpy188III	TCNNGA	4 cut(s)	55, 245, 325, 368
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	15, 452
HpyCH4V	TGCA	2 cut(s)	159, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	4 cut(s)	60, 129, 339, 348
HpySE526I	ACGT	2 cut(s)	15, 452
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	49, 204, 214
HspAI	GCGC	2 cut(s)	81, 265
KasI	GGCGCC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	87, 195
Lsp1109I	GCAGC	3 cut(s)	53, 235, 349
LweI	GCATC	2 cut(s)	114, 349
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	2 cut(s)	15, 452
MalI	GATC	2 cut(s)	89, 197
MboI	GATC	2 cut(s)	87, 195
MboII	GAAGA	4 cut(s)	10, 268, 271, 340
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	148
Mly113I	GGCGCC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	31, 32, 156, 310, 324, 327, 343, 364
MseI	TTAA	3 cut(s)	153, 171, 183
MspA1I	CMGCKG	1 cut(s)	34
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	10, 25
MspR9I	CCNGG	3 cut(s)	10, 26, 96
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	78
NarI	GGCGCC	1 cut(s)	81
NciI	CCSGG	2 cut(s)	10, 26
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	87, 195
NlaIII	CATG	3 cut(s)	49, 204, 214
NlaIV	GGNNCC	3 cut(s)	30, 82, 307
NruI	TCGCGA	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	111, 125, 248, 434
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	4 cut(s)	43, 71, 225, 364
PluTI	GGCGCC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	30, 82, 307
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	87
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	153, 171, 183
SatI	GCNGC	4 cut(s)	42, 70, 224, 363
Sau3AI	GATC	2 cut(s)	87, 195
Sau96I	GGNCC	1 cut(s)	294
ScrFI	CCNGG	3 cut(s)	10, 26, 96
SfaNI	GCATC	2 cut(s)	114, 349
SfoI	GGCGCC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	294
SmlI	CTYRAG	3 cut(s)	182, 243, 289
SmoI	CTYRAG	3 cut(s)	182, 243, 289
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	3 cut(s)	32, 70, 178
SspDI	GGCGCC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	3 cut(s)	8, 24, 94
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	2 cut(s)	18, 455
TaqI	TCGA	1 cut(s)	449
TasI	AATT	1 cut(s)	148
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	4 cut(s)	111, 125, 248, 434
Tru1I	TTAA	3 cut(s)	153, 171, 183
Tru9I	TTAA	3 cut(s)	153, 171, 183
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	3 cut(s)	41, 223, 362
TspDTI	ATGAA	5 cut(s)	103, 133, 399, 413, 432
TspRI	CASTG	1 cut(s)	82
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	148
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.