Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00346

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Forward (+)

120352 .. 122604

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTCTCAAGACCGAACTCTGTAGGTTCAGTGGGGCGAAGATCTACCCTGGTAGAGGCATCAGATTTATCCGGTCTGACTCTCAGGTGTTCCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAATCGGTTGAAGCCATCTAAGATTACCTGGACAGCCATGTACAGGAAGCAACACAAGAAGGATATTGCTCAAGAATCTGTTAAGAAGAGGAGACGTGCCAATAAGAAGCCTTATTCAAGGTCAATAGTTGGTGCCACCCTGGAGGTTATCCAGAAGAGGAGGACCGAAAAGCCTGAAGTTCGTGATGCTGCTCGTGAGGCCGCACTCCGTGAAATCAAGGAAAGGATCAAGAAAACCAAGGATGAAAAGAAGGCGAAGAAGGCAGAAGTTGTTGCCAAACAGAAGAGCAAGGGTCAGAATATTTCCAAGGGAGCTGCCCCCAAGGGTCCCAAGCTTGGTGGTGGCGGCGGCAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

162

Amino Acids

18.5

Weight (kDa)

10.85

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	3 - 67	1.2e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	3 cut(s)	330, 474, 477
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	122, 170
AfeI	AGCGCT	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	56, 171, 464
AgsI	TTSAA	3 cut(s)	108, 139, 246
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	3 cut(s)	49, 155, 267
AluBI	AGCT	2 cut(s)	443, 463
AluI	AGCT	2 cut(s)	443, 463
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	485
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	317, 443
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	291, 455
AvaII	GGWCC	2 cut(s)	291, 455
BanI	GGYRCC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	304, 430
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	3 cut(s)	51, 157, 269
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	487
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	5 cut(s)	318, 330, 444, 475, 478
BlsI	GCNGC	5 cut(s)	319, 331, 445, 476, 479
Bme1390I	CCNGG	3 cut(s)	51, 157, 269
Bme18I	GGWCC	2 cut(s)	291, 455
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	291, 455
BmiI	GGNNCC	3 cut(s)	262, 456, 457
BmrFI	CCNGG	3 cut(s)	51, 157, 269
BmsI	GCATC	2 cut(s)	69, 304
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	183
BsaJI	CCNNGG	5 cut(s)	49, 267, 366, 435, 450
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 171, 464
BseBI	CCWGG	3 cut(s)	51, 157, 269
BseDI	CCNNGG	5 cut(s)	49, 267, 366, 435, 450
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	56, 171, 464
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	232, 301
BseXI	GCAGC	2 cut(s)	304, 430
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	56, 171, 464
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	42, 354
BspACI	CCGC	3 cut(s)	330, 474, 477
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	262, 456, 457
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	5 cut(s)	49, 267, 366, 435, 450
BssMI	GATC	2 cut(s)	42, 354
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	3 cut(s)	366, 435, 450
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	3 cut(s)	51, 157, 269
Bst6I	CTCTTC	3 cut(s)	209, 278, 407
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	2 cut(s)	84, 147
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	2 cut(s)	45, 357
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	42, 354
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 389, 483
BstNI	CCWGG	3 cut(s)	51, 157, 269
BstSCI	CCNGG	3 cut(s)	49, 155, 267
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	304, 430
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	329
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	482
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	291, 455
Csp6I	GTAC	2 cut(s)	121, 169
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	142, 164, 238, 301, 329, 443, 463
CviKI_1	RGCY	7 cut(s)	142, 164, 238, 301, 329, 443, 463
CviQI	GTAC	2 cut(s)	121, 169
DdeI	CTNAG	2 cut(s)	84, 147
DpnI	GATC	2 cut(s)	44, 356
DpnII	GATC	2 cut(s)	42, 354
DraIII	CACNNNGTG	1 cut(s)	338
Eam1104I	CTCTTC	3 cut(s)	209, 278, 407
EarI	CTCTTC	3 cut(s)	209, 278, 407
Eco130I	CCWWGG	3 cut(s)	366, 435, 450
Eco47I	GGWCC	2 cut(s)	291, 455
Eco47III	AGCGCT	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRII	CCWGG	3 cut(s)	49, 155, 267
EcoT14I	CCWWGG	3 cut(s)	366, 435, 450
ErhI	CCWWGG	3 cut(s)	366, 435, 450
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	169
FaiI	YATR	1 cut(s)	167
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	5 cut(s)	318, 330, 444, 475, 478
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	5 cut(s)	318, 330, 444, 475, 478
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	5 cut(s)	318, 330, 444, 475, 478
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	80, 203
HpaII	CCGG	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	65, 79, 426
Hpy188III	TCNNGA	6 cut(s)	10, 200, 280, 311, 323, 358
HpyAV	CCTTC	3 cut(s)	181, 373, 382
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 389, 483
HpyF3I	CTNAG	2 cut(s)	84, 147
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	484
KflI	GGGWCCC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	42, 354
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	2 cut(s)	304, 430
LweI	GCATC	2 cut(s)	69, 304
MaeII	ACGT	1 cut(s)	223
MalI	GATC	2 cut(s)	44, 356
MboI	GATC	2 cut(s)	42, 354
MboII	GAAGA	5 cut(s)	52, 226, 295, 397, 424
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	8 cut(s)	50, 104, 111, 210, 265, 279, 282, 319
MseI	TTAA	1 cut(s)	210
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	51, 157, 269
MvaI	CCWGG	3 cut(s)	51, 157, 269
MwoI	GCNNNNNNNGC	3 cut(s)	326, 389, 483
NdeII	GATC	2 cut(s)	42, 354
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	3 cut(s)	262, 456, 457
PciSI	GCTCTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	319, 331, 445, 476, 479
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	3 cut(s)	49, 155, 267
PspGI	CCWGG	3 cut(s)	49, 155, 267
PspN4I	GGNNCC	3 cut(s)	262, 456, 457
PspPI	GGNCC	2 cut(s)	291, 455
PspPPI	RGGWCCY	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	122, 170
RsaNI	GTAC	2 cut(s)	121, 169
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	318, 330, 444, 475, 478
Sau3AI	GATC	2 cut(s)	42, 354
Sau96I	GGNCC	2 cut(s)	291, 455
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	51, 157, 269
SetI	ASST	9 cut(s)	29, 90, 122, 158, 226, 251, 276, 445, 465
SfaNI	GCATC	2 cut(s)	69, 304
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	2 cut(s)	291, 455
SmlI	CTYRAG	2 cut(s)	8, 198
SmoI	CTYRAG	2 cut(s)	8, 198
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	330, 474, 477
SspI	AATATT	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	49, 155, 267
StyI	CCWWGG	3 cut(s)	366, 435, 450
TaiI	ACGT	1 cut(s)	226
TaqII	GACCGA	2 cut(s)	29, 308
TasI	AATT	1 cut(s)	103
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	3 cut(s)	332, 477, 480
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	2 cut(s)	317, 443
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	291, 455
XagI	CCTNNNNNAGG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.