Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002113.1

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Forward (+)

13736 .. 18867

Gene Structure 5132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002113.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgatccggtgcagcggagcacatggtttttgggtggaattggatttacgttcggccaatcaggctgtgagtttggaggacagaatggtaattttacctgaatttgagggagttggtggtgttgattccttaaattatgccccccacctaggctacagggtttggactgaactatgccgcttcagtggagctaagatctacccaggtagaggcatccgatttgttcgtgctgattctcaggtgttcctgtttgcaaactctaagaacaagaggtacttccacaacagactgaagccagctaaacttgcttggacagccatgtacagaaagcaacacaagaaggacatttctcaagaaactgttaagaagaggcgtcgcaccacaaaaaaaccttactctcgatccatagtgggtgctactttggaggtcatacagaagagaagaagtgaaaaacctgaagttagagatgctgcaagagaggctgctcttcgtgaaattaaggagaggatcaagaaaaccaaggatgaaaagagggcgaagaaggccgaagtaatggccaggtcaacaaagaatcaaagcaagggtaacttgccaaagggtggtgctgcaaataagggccccaagggcgctggaggagctaagggcaagcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

217

Amino Acids

24.58

Weight (kDa)

10.6

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AciI	CCGC	2 cut(s)	15, 178
AclWI	GGATC	2 cut(s)	396, 515
AcoI	YGGCCR	2 cut(s)	54, 555
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	3 cut(s)	166, 311, 477
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	2 cut(s)	275, 323
AfiI	CCNNNNNNNGG	3 cut(s)	149, 209, 599
AjnI	CCWGG	2 cut(s)	202, 557
AluBI	AGCT	3 cut(s)	191, 299, 638
AluI	AGCT	3 cut(s)	191, 299, 638
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	396, 515
AoxI	GGCC	4 cut(s)	54, 543, 555, 616
ApaI	GGGCCC	1 cut(s)	620
ApeKI	GCWGC	4 cut(s)	12, 470, 482, 605
ApoI	RAATTY	1 cut(s)	101
AspA2I	CCTAGG	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	2 cut(s)	616, 617
AvrII	CCTAGG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	24, 457, 469, 592
BciT130I	CCWGG	2 cut(s)	204, 559
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	630
BglI	GCCNNNNNGGC	2 cut(s)	62, 624
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	5 cut(s)	13, 178, 471, 483, 606
BlnI	CCTAGG	1 cut(s)	148
BlsI	GCNGC	5 cut(s)	14, 179, 472, 484, 607
Bme1390I	CCNGG	2 cut(s)	204, 559
BmgT120I	GGNCC	2 cut(s)	616, 617
BmiI	GGNNCC	2 cut(s)	618, 619
BmrFI	CCNGG	2 cut(s)	204, 559
BmsI	GCATC	2 cut(s)	222, 457
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	4 cut(s)	148, 202, 519, 621
BsaWI	WCCGGW	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 209, 599
BseBI	CCWGG	2 cut(s)	204, 559
BseDI	CCNNGG	4 cut(s)	148, 202, 519, 621
BseGI	GGATG	2 cut(s)	213, 529
BseLI	CCNNNNNNNGG	3 cut(s)	149, 209, 599
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	4 cut(s)	24, 457, 469, 592
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	56, 545, 557, 618
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	3 cut(s)	149, 209, 599
BsnI	GGCC	4 cut(s)	56, 545, 557, 618
Bsp120I	GGGCCC	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	22, 620
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	3, 195, 401, 507
BspACI	CCGC	2 cut(s)	15, 178
BspANI	GGCC	4 cut(s)	56, 545, 557, 618
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	618, 619
BspPI	GGATC	2 cut(s)	396, 515
BspQI	GCTCTTC	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	321
BssECI	CCNNGG	4 cut(s)	148, 202, 519, 621
BssMI	GATC	4 cut(s)	3, 195, 401, 507
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	3 cut(s)	148, 519, 621
Bst2UI	CCWGG	2 cut(s)	204, 559
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	3 cut(s)	362, 431, 492
BstACI	GRCGYC	1 cut(s)	373
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	297, 647
BstDEI	CTNAG	4 cut(s)	192, 237, 261, 639
BstF5I	GGATG	2 cut(s)	213, 529
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	4 cut(s)	6, 198, 404, 510
BstMBI	GATC	4 cut(s)	3, 195, 401, 507
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 305, 314, 479, 542, 624, 635
BstNI	CCWGG	2 cut(s)	204, 559
BstSCI	CCNGG	2 cut(s)	202, 557
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	620
BstV1I	GCAGC	4 cut(s)	24, 457, 469, 592
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	56, 545, 557, 618
BtsCI	GGATG	2 cut(s)	213, 529
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	297, 647
CfoI	GCGC	1 cut(s)	629
Cfr13I	GGNCC	2 cut(s)	616, 617
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	274, 322
CviAII	CATG	2 cut(s)	23, 319
CviQI	GTAC	2 cut(s)	274, 322
DdeI	CTNAG	4 cut(s)	192, 237, 261, 639
DpnI	GATC	4 cut(s)	5, 197, 403, 509
DpnII	GATC	4 cut(s)	3, 195, 401, 507
EaeI	YGGCCR	2 cut(s)	54, 555
Eam1104I	CTCTTC	3 cut(s)	362, 431, 492
EarI	CTCTTC	3 cut(s)	362, 431, 492
Eco130I	CCWWGG	3 cut(s)	148, 519, 621
Eco24I	GRGCYC	1 cut(s)	620
Eco57I	CTGAAG	3 cut(s)	166, 311, 477
EcoO109I	RGGNCCY	2 cut(s)	616, 617
EcoRII	CCWGG	2 cut(s)	202, 557
EcoT14I	CCWWGG	3 cut(s)	148, 519, 621
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	3 cut(s)	148, 519, 621
FaeI	CATG	2 cut(s)	26, 322
FaiI	YATR	6 cut(s)	24, 138, 175, 320, 407, 431
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 572, 604
FatI	CATG	2 cut(s)	22, 318
Fnu4HI	GCNGC	5 cut(s)	13, 178, 471, 483, 606
FokI	GGATG	2 cut(s)	200, 536
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	5 cut(s)	13, 178, 471, 483, 606
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	5 cut(s)	13, 178, 471, 483, 606
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	4 cut(s)	56, 545, 557, 618
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	26, 322
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	3 cut(s)	125, 233, 571
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	4 cut(s)	353, 399, 491, 511
Hpy8I	GTNNAC	1 cut(s)	564
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	334, 535
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	12, 254, 473, 608
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 305, 314, 479, 542, 624, 635
HpyF3I	CTNAG	4 cut(s)	192, 237, 261, 639
HpySE526I	ACGT	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	26, 322
HspAI	GCGC	1 cut(s)	627
Kzo9I	GATC	4 cut(s)	3, 195, 401, 507
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	3 cut(s)	17, 188, 635
Lsp1109I	GCAGC	4 cut(s)	24, 457, 469, 592
LweI	GCATC	2 cut(s)	222, 457
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	4 cut(s)	5, 197, 403, 509
MboI	GATC	4 cut(s)	3, 195, 401, 507
MboII	GAAGA	5 cut(s)	379, 448, 453, 479, 550
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	22, 620
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	5 cut(s)	38, 90, 101, 133, 495
MluNI	TGGCCA	1 cut(s)	557
Mox20I	TGGCCA	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	3 cut(s)	131, 363, 498
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	204, 559
MvaI	CCWGG	2 cut(s)	204, 559
MwoI	GCNNNNNNNGC	7 cut(s)	62, 305, 314, 479, 542, 624, 635
NdeII	GATC	4 cut(s)	3, 195, 401, 507
NlaIII	CATG	2 cut(s)	26, 322
NlaIV	GGNNCC	2 cut(s)	618, 619
PciSI	GCTCTTC	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	125, 233, 571
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	5 cut(s)	14, 179, 472, 484, 607
Psp6I	CCWGG	2 cut(s)	202, 557
PspGI	CCWGG	2 cut(s)	202, 557
PspN4I	GGNNCC	2 cut(s)	618, 619
PspOMI	GGGCCC	1 cut(s)	616
PspPI	GGNCC	2 cut(s)	616, 617
PsrI	GAACNNNNNNTAC	2 cut(s)	257, 289
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	2 cut(s)	275, 323
RsaNI	GTAC	2 cut(s)	274, 322
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	131, 363, 498
SatI	GCNGC	5 cut(s)	13, 178, 471, 483, 606
Sau3AI	GATC	4 cut(s)	3, 195, 401, 507
Sau96I	GGNCC	2 cut(s)	616, 617
ScrFI	CCNGG	2 cut(s)	204, 559
SduI	GDGCHC	2 cut(s)	22, 620
SfaNI	GCATC	2 cut(s)	222, 457
SfcI	CTRYAG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	5 cut(s)	38, 90, 101, 133, 495
SsiI	CCGC	2 cut(s)	15, 178
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	202, 557
StyI	CCWWGG	3 cut(s)	148, 519, 621
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	400
TasI	AATT	5 cut(s)	38, 90, 101, 133, 495
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	125, 233, 571
Tru1I	TTAA	3 cut(s)	131, 363, 498
Tru9I	TTAA	3 cut(s)	131, 363, 498
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	4 cut(s)	12, 470, 482, 605
TspDTI	ATGAA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	190
Van91I	CCANNNNNTGG	1 cut(s)	599
XapI	RAATTY	1 cut(s)	101
XmaJI	CCTAGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.