Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

33084350 .. 33087292

Gene Structure 2943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTTCTCAAGATTGAGCTTTGTTGCTTCAGTGGCGCCAAGATCTACCCTGGTAGGGGCATCAAATTCATCCACTCCGATTCTCAGGTTTTCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTCTACAACCGCTTCAAGCCGTCCAAGATCACATGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGACTCTGCTCAAGAATCTGTGAAGAAGAAGCGCCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTGGAGGTCATCCAGAAGAGGAGGACTGAGAAGCCTGAGGTCCGTGACGCTACTCACGAGACCGCTCTCCGTGAATATGTTGCTCATATCATTGATTTGGATAGATCATTGGATAGATCATTGAAAGGATTCCAATCACAAATGGGAAGTCTAACATGGGAACTTGGCAGGGTTCCTGAGGGGCACGTTTGGATTCAGGGAGACACACTTAGTCCTCCTTTGATTCACGGTCATATGGACATGTGCCTTACACTCTTATTCAAGGCAGAGTGTTTTTCTCAGGGTAATGCTATTTCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

191

Amino Acids

21.92

Weight (kDa)

9.82

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	3 - 67	1.8e-25	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 260
AccBSI	CCGCTC	1 cut(s)	332
AciI	CCGC	2 cut(s)	133, 330
AcsI	RAATTY	2 cut(s)	65, 103
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	55, 56
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	139, 391, 529
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	320, 462
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	65, 103
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	38, 222
AspS9I	GGNCC	2 cut(s)	249, 307
AvaII	GGWCC	2 cut(s)	249, 307
AxyI	CCTNAGG	2 cut(s)	303, 444
BaeGI	GKGCMC	1 cut(s)	453
BanI	GGYRCC	2 cut(s)	35, 260
BauI	CACGAG	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	190
BceAI	ACGGC	2 cut(s)	127, 207
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	320, 462
BfoI	RGCGCY	2 cut(s)	39, 223
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	2 cut(s)	249, 307
BmgT120I	GGNCC	2 cut(s)	249, 307
BmiI	GGNNCC	3 cut(s)	37, 262, 441
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	183, 229
BsaBI	GATNNNNATC	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 56
Bse21I	CCTNAGG	2 cut(s)	303, 444
Bse8I	GATNNNNATC	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	69, 276
BseJI	GATNNNNATC	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	55, 56
BseMII	CTCAG	5 cut(s)	98, 285, 294, 435, 560
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	190
BshNI	GGYRCC	2 cut(s)	35, 260
BslI	CCNNNNNNNGG	2 cut(s)	55, 56
BsmAI	GTCTC	2 cut(s)	320, 462
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	42, 150, 371, 383
BspACI	CCGC	2 cut(s)	133, 330
BspCNI	CTCAG	5 cut(s)	97, 286, 295, 436, 559
BspLI	GGNNCC	3 cut(s)	37, 262, 441
BspT107I	GGYRCC	2 cut(s)	35, 260
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	4 cut(s)	42, 150, 371, 383
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	36
BstDEI	CTNAG	6 cut(s)	84, 294, 303, 444, 476, 546
BstF5I	GGATG	2 cut(s)	69, 276
BstH2I	RGCGCY	2 cut(s)	39, 223
BstHHI	GCGC	2 cut(s)	38, 222
BstKTI	GATC	4 cut(s)	45, 153, 374, 386
BstMAI	GTCTC	2 cut(s)	320, 462
BstMBI	GATC	4 cut(s)	42, 150, 371, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	2 cut(s)	303, 444
BtsCI	GGATG	2 cut(s)	69, 276
BtsIMutI	CAGTG	1 cut(s)	37
CfoI	GCGC	2 cut(s)	38, 222
Cfr13I	GGNCC	2 cut(s)	249, 307
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	4 cut(s)	156, 166, 423, 508
CviJI	RGCY	4 cut(s)	19, 142, 238, 301
CviKI_1	RGCY	4 cut(s)	19, 142, 238, 301
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	6 cut(s)	84, 294, 303, 444, 476, 546
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	4 cut(s)	44, 152, 373, 385
DpnII	GATC	4 cut(s)	42, 150, 371, 383
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	249, 307
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	2 cut(s)	303, 444
EcoRII	CCWGG	1 cut(s)	49
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
FaeI	CATG	4 cut(s)	159, 169, 426, 511
FaiI	YATR	9 cut(s)	101, 157, 167, 345, 354, 424, 501, 503, 509
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	4 cut(s)	155, 165, 422, 507
FauNDI	CATATG	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	56, 263
Fsp4HI	GCNGC	1 cut(s)	179
GlaI	GCGC	2 cut(s)	37, 221
GluI	GCNGC	1 cut(s)	179
HaeII	RGCGCY	2 cut(s)	39, 223
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	38, 222
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	159, 169, 426, 511
Hin6I	GCGC	2 cut(s)	36, 220
HinP1I	GCGC	2 cut(s)	36, 220
HinfI	GANTC	6 cut(s)	80, 191, 203, 396, 460, 490
Hpy188I	TCNGA	2 cut(s)	79, 173
Hpy188III	TCNNGA	5 cut(s)	10, 200, 280, 323, 443
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	6 cut(s)	84, 294, 303, 444, 476, 546
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	159, 169, 426, 511
HspAI	GCGC	2 cut(s)	36, 220
KasI	GGCGCC	1 cut(s)	35
Kzo9I	GATC	4 cut(s)	42, 150, 371, 383
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	4 cut(s)	44, 152, 373, 385
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	4 cut(s)	42, 150, 371, 383
MboII	GAAGA	3 cut(s)	223, 226, 295
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	2 cut(s)	65, 103
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	7 cut(s)	111, 265, 279, 282, 298, 439, 492
MroXI	GAANNNNTTC	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	36
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	4 cut(s)	42, 150, 371, 383
NlaIII	CATG	4 cut(s)	159, 169, 426, 511
NlaIV	GGNNCC	3 cut(s)	37, 262, 441
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	511
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	5 cut(s)	80, 203, 396, 460, 490
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	37, 262, 441
PspPI	GGNCC	2 cut(s)	249, 307
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	4 cut(s)	42, 150, 371, 383
Sau96I	GGNCC	2 cut(s)	249, 307
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	7 cut(s)	21, 90, 122, 251, 276, 309, 456
SfaNI	GCATC	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	2 cut(s)	249, 307
SmlI	CTYRAG	3 cut(s)	8, 198, 244
SmoI	CTYRAG	3 cut(s)	8, 198, 244
Sse9I	AATT	2 cut(s)	65, 103
SsiI	CCGC	2 cut(s)	133, 330
SspDI	GGCGCC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	456
TasI	AATT	2 cut(s)	65, 103
TfiI	GAWTC	5 cut(s)	80, 203, 396, 460, 490
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	58, 88
TspGWI	ACGGA	2 cut(s)	299, 326
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	249, 307
XapI	RAATTY	2 cut(s)	65, 103
XceI	RCATGY	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.