Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

64029215 .. 64030529

Gene Structure 1315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTGGACTTGCCGGTATGTAATAATTTATTGTTCTAATTGGGATGTCAGGACTGAACTATGCCGCTTCAGTGGAGCTAAGATCTACCCAGGTAGAGGCATCCGATTTGTTCGTGCTGATTCTCAGGTGTTCCTGTTTGCAAACTCTAAGAACAAGAGGTACTTCCACAACAGACTGAAGCCAGCTAAACTTGCTTGGACAGCCATGTACAGAAAGCAACACAAGAAGGACATTTCTCAAGAAACTGTTAAGAAGAGGCGTCGCACCACAAAAAAACCTTACTCTCGATCCATAGTGGGTGCTACTTTGGAGGTCATACAGAAGAGAAGAAGTGAAAAACCTGAAGTTAGAGATGCTGCAAGAGAGGCTGCTCTTCGTGAAATTAAGGAGAGGATCAAGAAAACCAAGGATGAAAAGAGGGCGAAGAAGGCCGAAGTAATGGCCAGGTCAACAAAGAATCAAAGCAAGGGTAACTTGCCAAAGGGTGGTGCTGCAAATAAGGGCCCCAAGGGCGCTGGAGGAGCTAAGGGCAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

179

Amino Acids

20.63

Weight (kDa)

10.83

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	17 - 80	1.8e-27	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	485
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	282, 401
AcoI	YGGCCR	1 cut(s)	441
AcuI	CTGAAG	3 cut(s)	52, 197, 363
AcyI	GRCGYC	1 cut(s)	259
AfaI	GTAC	2 cut(s)	161, 209
AfiI	CCNNNNNNNGG	2 cut(s)	95, 485
AjnI	CCWGG	2 cut(s)	88, 443
AluBI	AGCT	3 cut(s)	77, 185, 524
AluI	AGCT	3 cut(s)	77, 185, 524
AlwI	GGATC	2 cut(s)	282, 401
AoxI	GGCC	3 cut(s)	429, 441, 502
ApaI	GGGCCC	1 cut(s)	506
ApeKI	GCWGC	3 cut(s)	356, 368, 491
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	502, 503
BaeGI	GKGCMC	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	506
BbvI	GCAGC	3 cut(s)	343, 355, 478
BciT130I	CCWGG	2 cut(s)	90, 445
BfoI	RGCGCY	1 cut(s)	516
BglI	GCCNNNNNGGC	1 cut(s)	510
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	4 cut(s)	64, 357, 369, 492
BlsI	GCNGC	4 cut(s)	65, 358, 370, 493
Bme1390I	CCNGG	2 cut(s)	90, 445
BmgT120I	GGNCC	2 cut(s)	502, 503
BmiI	GGNNCC	2 cut(s)	504, 505
BmrFI	CCNGG	2 cut(s)	90, 445
BmsI	GCATC	2 cut(s)	108, 343
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	88, 405, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 485
Bse118I	RCCGGY	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	90, 445
BseDI	CCNNGG	3 cut(s)	88, 405, 507
BseGI	GGATG	3 cut(s)	49, 99, 415
BseLI	CCNNNNNNNGG	2 cut(s)	95, 485
BseMII	CTCAG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	343, 355, 478
BshFI	GGCC	3 cut(s)	431, 443, 504
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	95, 485
BsnI	GGCC	3 cut(s)	431, 443, 504
Bsp120I	GGGCCC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	81, 287, 393
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	431, 443, 504
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	504, 505
BspPI	GGATC	2 cut(s)	282, 401
BspQI	GCTCTTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	88, 405, 507
BssMI	GATC	3 cut(s)	81, 287, 393
BssNI	GRCGYC	1 cut(s)	259
BssT1I	CCWWGG	2 cut(s)	405, 507
Bst2UI	CCWGG	2 cut(s)	90, 445
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	3 cut(s)	248, 317, 378
BstACI	GRCGYC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	183, 533
BstDEI	CTNAG	4 cut(s)	78, 123, 147, 525
BstF5I	GGATG	3 cut(s)	49, 99, 415
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	3 cut(s)	84, 290, 396
BstMBI	GATC	3 cut(s)	81, 287, 393
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 200, 365, 428, 510, 521
BstNI	CCWGG	2 cut(s)	90, 445
BstSCI	CCNGG	2 cut(s)	88, 443
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	343, 355, 478
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	431, 443, 504
BtsCI	GGATG	3 cut(s)	49, 99, 415
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	183, 533
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	502, 503
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	160, 208
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	9 cut(s)	77, 181, 185, 203, 368, 431, 443, 504, 524
CviKI_1	RGCY	9 cut(s)	77, 181, 185, 203, 368, 431, 443, 504, 524
CviQI	GTAC	2 cut(s)	160, 208
DdeI	CTNAG	4 cut(s)	78, 123, 147, 525
DpnI	GATC	3 cut(s)	83, 289, 395
DpnII	GATC	3 cut(s)	81, 287, 393
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	248, 317, 378
EarI	CTCTTC	3 cut(s)	248, 317, 378
Eco130I	CCWWGG	2 cut(s)	405, 507
Eco24I	GRGCYC	1 cut(s)	506
Eco57I	CTGAAG	3 cut(s)	52, 197, 363
EcoO109I	RGGNCCY	2 cut(s)	502, 503
EcoRII	CCWGG	2 cut(s)	88, 443
EcoT14I	CCWWGG	2 cut(s)	405, 507
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	405, 507
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	18, 61, 206, 293, 317
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 458, 490
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	64, 357, 369, 492
FokI	GGATG	3 cut(s)	56, 86, 422
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	4 cut(s)	64, 357, 369, 492
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	4 cut(s)	64, 357, 369, 492
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	431, 443, 504
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	119, 457
HpaII	CCGG	1 cut(s)	13
Hpy166II	GTNNAC	2 cut(s)	6, 450
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	5 cut(s)	49, 239, 285, 377, 397
Hpy8I	GTNNAC	2 cut(s)	6, 450
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	220, 421
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	140, 359, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 200, 365, 428, 510, 521
HpyF3I	CTNAG	4 cut(s)	78, 123, 147, 525
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	81, 287, 393
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	74, 521
Lsp1109I	GCAGC	3 cut(s)	343, 355, 478
LweI	GCATC	2 cut(s)	108, 343
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	83, 289, 395
MboI	GATC	3 cut(s)	81, 287, 393
MboII	GAAGA	5 cut(s)	265, 334, 339, 365, 436
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	3 cut(s)	24, 37, 381
MluNI	TGGCCA	1 cut(s)	443
MnlI	CCTC	8 cut(s)	89, 150, 249, 304, 358, 384, 411, 512
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	249, 384
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	90, 445
MvaI	CCWGG	2 cut(s)	90, 445
MwoI	GCNNNNNNNGC	6 cut(s)	191, 200, 365, 428, 510, 521
NdeII	GATC	3 cut(s)	81, 287, 393
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	504, 505
PciSI	GCTCTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	119, 457
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	65, 358, 370, 493
Psp6I	CCWGG	2 cut(s)	88, 443
PspGI	CCWGG	2 cut(s)	88, 443
PspN4I	GGNNCC	2 cut(s)	504, 505
PspOMI	GGGCCC	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	502, 503
PsrI	GAACNNNNNNTAC	2 cut(s)	143, 175
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	161, 209
RsaNI	GTAC	2 cut(s)	160, 208
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	249, 384
SatI	GCNGC	4 cut(s)	64, 357, 369, 492
Sau3AI	GATC	3 cut(s)	81, 287, 393
Sau96I	GGNCC	2 cut(s)	502, 503
ScrFI	CCNGG	2 cut(s)	90, 445
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	2 cut(s)	108, 343
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	3 cut(s)	24, 37, 381
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	88, 443
StyI	CCWWGG	2 cut(s)	405, 507
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	24, 37, 381
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	119, 457
Tru1I	TTAA	2 cut(s)	249, 384
Tru9I	TTAA	2 cut(s)	249, 384
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	3 cut(s)	356, 368, 491
TspDTI	ATGAA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.