Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

21523651 .. 21525714

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTTCTCAAGACTGAGTTATGCCGCTTCAGTGGAGCAAAGATCTACCCGGGTAGAGGCATCCGATTTGTTCGCTCGGATTCTCAGGTGTTCCTGTTTGCAAACTCTAAGAACAAAAGGTACTTCCATAACAGACTGAAGCCAGCTAAAATTGCTTGGACAGCCATGTACAGAAAGCAACACAAGAAGGATATTGCTCAAGAAACTGTCAAGAAGAGGCGTCGCTCCACCAAGAAGCCTTACTCTCGATCCATAGTGGGTGCTACATTGGAGGTCATACAGAAGAGACGAAGCGAAAAACCTGAAGTTCGTGATGCTGCAAGAGAGGCTGCTCTTCGTGAAATTAAGGAGAGGATCAAGAAAACCAAGGACGAAAAGAGGGCGAAGAAGGCAGAAGTAATGGCTAGGTCAACAAAGAATCAAAGCAAGGGTAACTTCCCTAAGGGTGGTGGTGCAAATAAGGGCCCCAAGGCTGCTGGAGGAGCCAAGGGCAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

167

Amino Acids

18.93

Weight (kDa)

11.12

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	3 - 67	8.8e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	243, 362
AcuI	CTGAAG	3 cut(s)	13, 158, 324
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	2 cut(s)	122, 170
AfiI	CCNNNNNNNGG	2 cut(s)	56, 446
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	243, 362
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	463
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	317, 329, 473
AspS9I	GGNCC	2 cut(s)	463, 464
AsuC2I	CCSGG	2 cut(s)	50, 51
AvaI	CYCGRG	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	304, 316, 460
BcnI	CCSGG	2 cut(s)	50, 51
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	405
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	4 cut(s)	25, 318, 330, 474
BlsI	GCNGC	4 cut(s)	26, 319, 331, 475
Bme1390I	CCNGG	2 cut(s)	50, 51
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	463, 464
BmiI	GGNNCC	3 cut(s)	465, 466, 484
BmrFI	CCNGG	2 cut(s)	50, 51
BmsI	GCATC	2 cut(s)	69, 304
BpmI	CTGGAG	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	50, 51
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	49, 366, 468, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 446
Bse21I	CCTNAGG	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	49, 366, 468, 486
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	56, 446
BseMII	CTCAG	2 cut(s)	6, 98
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	304, 316, 460
BshFI	GGCC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	56, 446
BsmAI	GTCTC	1 cut(s)	280
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	465
BsoBI	CYCGRG	1 cut(s)	49
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	42, 248, 354
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	2 cut(s)	7, 97
BspLI	GGNNCC	3 cut(s)	465, 466, 484
BspPI	GGATC	2 cut(s)	243, 362
BspQI	GCTCTTC	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	49, 366, 468, 486
BssMI	GATC	3 cut(s)	42, 248, 354
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	3 cut(s)	366, 468, 486
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	3 cut(s)	209, 278, 339
BstACI	GRCGYC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	144, 494
BstDEI	CTNAG	4 cut(s)	15, 84, 108, 441
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	3 cut(s)	45, 251, 357
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	42, 248, 354
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 161, 326, 389, 482
BstSCI	CCNGG	2 cut(s)	48, 49
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	3 cut(s)	304, 316, 460
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	144, 494
Cfr13I	GGNCC	2 cut(s)	463, 464
Cfr9I	CCCGGG	1 cut(s)	49
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	121, 169
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	9 cut(s)	142, 146, 164, 238, 329, 404, 465, 473, 485
CviKI_1	RGCY	9 cut(s)	142, 146, 164, 238, 329, 404, 465, 473, 485
CviQI	GTAC	2 cut(s)	121, 169
DdeI	CTNAG	4 cut(s)	15, 84, 108, 441
DpnI	GATC	3 cut(s)	44, 250, 356
DpnII	GATC	3 cut(s)	42, 248, 354
Eam1104I	CTCTTC	3 cut(s)	209, 278, 339
EarI	CTCTTC	3 cut(s)	209, 278, 339
Eco130I	CCWWGG	3 cut(s)	366, 468, 486
Eco24I	GRGCYC	1 cut(s)	467
Eco57I	CTGAAG	3 cut(s)	13, 158, 324
Eco81I	CCTNAGG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	463, 464
EcoT14I	CCWWGG	3 cut(s)	366, 468, 486
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	3 cut(s)	366, 468, 486
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	22, 129, 167, 254, 278
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	25, 318, 330, 474
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	25, 318, 330, 474
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	4 cut(s)	25, 318, 330, 474
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	80, 418
HpaII	CCGG	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	2 cut(s)	65, 79
Hpy188III	TCNNGA	7 cut(s)	10, 200, 211, 246, 311, 338, 358
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	181, 382
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	101, 320, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 161, 326, 389, 482
HpyF3I	CTNAG	4 cut(s)	15, 84, 108, 441
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	42, 248, 354
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	35, 230, 482
LpnPI	CCDG	6 cut(s)	63, 71, 107, 156, 315, 462
Lsp1109I	GCAGC	3 cut(s)	304, 316, 460
LweI	GCATC	2 cut(s)	69, 304
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	44, 250, 356
MboI	GATC	3 cut(s)	42, 248, 354
MboII	GAAGA	4 cut(s)	226, 295, 326, 397
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	2 cut(s)	150, 342
MnlI	CCTC	7 cut(s)	50, 210, 265, 319, 345, 372, 473
MseI	TTAA	1 cut(s)	345
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	50, 51
MwoI	GCNNNNNNNGC	5 cut(s)	152, 161, 326, 389, 482
NciI	CCSGG	2 cut(s)	50, 51
NdeII	GATC	3 cut(s)	42, 248, 354
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	3 cut(s)	465, 466, 484
PciSI	GCTCTTC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	80, 418
PkrI	GCNGC	4 cut(s)	26, 319, 331, 475
PspN4I	GGNNCC	3 cut(s)	465, 466, 484
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	463, 464
PsrI	GAACNNNNNNTAC	2 cut(s)	104, 136
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	122, 170
RsaNI	GTAC	2 cut(s)	121, 169
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	25, 318, 330, 474
Sau3AI	GATC	3 cut(s)	42, 248, 354
Sau96I	GGNCC	2 cut(s)	463, 464
ScrFI	CCNGG	2 cut(s)	50, 51
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	6 cut(s)	90, 122, 148, 276, 304, 410
SfaNI	GCATC	2 cut(s)	69, 304
SmaI	CCCGGG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	8, 198
SmoI	CTYRAG	2 cut(s)	8, 198
Sse9I	AATT	2 cut(s)	150, 342
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	48, 49
StyI	CCWWGG	3 cut(s)	366, 468, 486
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	150, 342
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	80, 418
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	3 cut(s)	317, 329, 473
TspMI	CCCGGG	1 cut(s)	49
TspRI	CASTG	1 cut(s)	37
XmaI	CCCGGG	1 cut(s)	49
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.