Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

50612665 .. 50614807

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG375700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTTCTCAAGACTGAACTGTGCCGCTTCAGTGGAGCTAAGATCTACCCAGGTAGAGGCATCCGATTTGTTCGTGCTGATTCTCAGGTGTTCCTGTTTGCAAACTCTAAGAACAAGAGGTACTTCCACAACAGACTGAAGCCAGCTAAACTTGCTTGGACAGCCATGTACAGAAAGCAACACAAGAAGGACATTTCTCAAGAAACTGTTAAGAAGAGGCGTCGCACCACGAAAAAGCCTTACTCTCGATCCATAGTGGGTGCTACTTTGGAGGTCATACAGAAGAGAAGAAGTGAAAAACCTGAAGTTCGAGATGCTGCAAGAGAGGCTGCTCTTCGTGAAATTAAGGAGAGGATCAAGAAAACCAAGGATGAAAAGAGGGCGAAGAAGGCCGAAGTAATGGCCAGGTCAACAAAGAATCAAAGCAAGGGTAACTTGCCAAAGGGTGGCGCTGCAAATAAGGGCCCCAAGGGCGCTGGAGGAGCTAAGGGCAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

166

Amino Acids

18.91

Weight (kDa)

11.12

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	3 - 67	1.3e-27	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	243, 362
AcoI	YGGCCR	1 cut(s)	402
AcuI	CTGAAG	3 cut(s)	13, 158, 324
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	2 cut(s)	122, 170
AfiI	CCNNNNNNNGG	2 cut(s)	56, 446
AjnI	CCWGG	2 cut(s)	49, 404
AluBI	AGCT	3 cut(s)	38, 146, 485
AluI	AGCT	3 cut(s)	38, 146, 485
AlwI	GGATC	2 cut(s)	243, 362
AoxI	GGCC	3 cut(s)	390, 402, 463
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	317, 329, 452
AspLEI	GCGC	2 cut(s)	452, 476
AspS9I	GGNCC	2 cut(s)	463, 464
BaeGI	GKGCMC	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	304, 316, 439
BciT130I	CCWGG	2 cut(s)	51, 406
BfoI	RGCGCY	2 cut(s)	453, 477
BglI	GCCNNNNNGGC	1 cut(s)	471
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	4 cut(s)	25, 318, 330, 453
BlsI	GCNGC	4 cut(s)	26, 319, 331, 454
Bme1390I	CCNGG	2 cut(s)	51, 406
BmgT120I	GGNCC	2 cut(s)	463, 464
BmiI	GGNNCC	2 cut(s)	465, 466
BmrFI	CCNGG	2 cut(s)	51, 406
BmsI	GCATC	2 cut(s)	69, 304
BpmI	CTGGAG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	49, 366, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 446
BseBI	CCWGG	2 cut(s)	51, 406
BseDI	CCNNGG	3 cut(s)	49, 366, 468
BseGI	GGATG	2 cut(s)	60, 376
BseLI	CCNNNNNNNGG	2 cut(s)	56, 446
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	304, 316, 439
BshFI	GGCC	3 cut(s)	392, 404, 465
BslI	CCNNNNNNNGG	2 cut(s)	56, 446
BsnI	GGCC	3 cut(s)	392, 404, 465
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	42, 248, 354
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	3 cut(s)	392, 404, 465
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	465, 466
BspPI	GGATC	2 cut(s)	243, 362
BspQI	GCTCTTC	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	49, 366, 468
BssMI	GATC	3 cut(s)	42, 248, 354
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	2 cut(s)	366, 468
Bst2UI	CCWGG	2 cut(s)	51, 406
Bst4CI	ACNGT	2 cut(s)	21, 208
Bst6I	CTCTTC	3 cut(s)	209, 278, 339
BstACI	GRCGYC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	144, 494
BstDEI	CTNAG	4 cut(s)	39, 84, 108, 486
BstF5I	GGATG	2 cut(s)	60, 376
BstH2I	RGCGCY	2 cut(s)	453, 477
BstHHI	GCGC	2 cut(s)	452, 476
BstKTI	GATC	3 cut(s)	45, 251, 357
BstMBI	GATC	3 cut(s)	42, 248, 354
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 161, 326, 389, 471, 482
BstNI	CCWGG	2 cut(s)	51, 406
BstSCI	CCNGG	2 cut(s)	49, 404
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	3 cut(s)	304, 316, 439
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	392, 404, 465
BtsCI	GGATG	2 cut(s)	60, 376
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	144, 494
CfoI	GCGC	2 cut(s)	452, 476
Cfr13I	GGNCC	2 cut(s)	463, 464
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	121, 169
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	2 cut(s)	121, 169
DdeI	CTNAG	4 cut(s)	39, 84, 108, 486
DpnI	GATC	3 cut(s)	44, 250, 356
DpnII	GATC	3 cut(s)	42, 248, 354
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	3 cut(s)	209, 278, 339
EarI	CTCTTC	3 cut(s)	209, 278, 339
Eco130I	CCWWGG	2 cut(s)	366, 468
Eco24I	GRGCYC	1 cut(s)	467
Eco57I	CTGAAG	3 cut(s)	13, 158, 324
EcoO109I	RGGNCCY	2 cut(s)	463, 464
EcoRII	CCWGG	2 cut(s)	49, 404
EcoT14I	CCWWGG	2 cut(s)	366, 468
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	2 cut(s)	366, 468
FaeI	CATG	1 cut(s)	169
FaiI	YATR	3 cut(s)	167, 254, 278
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 419, 451
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	25, 318, 330, 453
FokI	GGATG	2 cut(s)	47, 383
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	25, 318, 330, 453
GlaI	GCGC	2 cut(s)	451, 475
GluI	GCNGC	4 cut(s)	25, 318, 330, 453
GsuI	CTGGAG	1 cut(s)	498
HaeII	RGCGCY	2 cut(s)	453, 477
HaeIII	GGCC	3 cut(s)	392, 404, 465
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	452, 476
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	2 cut(s)	450, 474
HinP1I	GCGC	2 cut(s)	450, 474
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	80, 418
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	6 cut(s)	10, 200, 246, 311, 338, 358
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	181, 382
HpyCH4III	ACNGT	2 cut(s)	21, 208
HpyCH4V	TGCA	3 cut(s)	101, 320, 455
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 161, 326, 389, 471, 482
HpyF3I	CTNAG	4 cut(s)	39, 84, 108, 486
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	2 cut(s)	450, 474
Kzo9I	GATC	3 cut(s)	42, 248, 354
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	35, 482
LpnPI	CCDG	9 cut(s)	36, 63, 71, 107, 156, 315, 391, 418, 462
Lsp1109I	GCAGC	3 cut(s)	304, 316, 439
LweI	GCATC	2 cut(s)	69, 304
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	44, 250, 356
MboI	GATC	3 cut(s)	42, 248, 354
MboII	GAAGA	5 cut(s)	226, 295, 300, 326, 397
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	404
MnlI	CCTC	8 cut(s)	50, 111, 210, 265, 319, 345, 372, 473
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	2 cut(s)	210, 345
Msp20I	TGGCCA	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	51, 406
MvaI	CCWGG	2 cut(s)	51, 406
MwoI	GCNNNNNNNGC	6 cut(s)	152, 161, 326, 389, 471, 482
NdeII	GATC	3 cut(s)	42, 248, 354
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	465, 466
PciSI	GCTCTTC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	80, 418
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	26, 319, 331, 454
Psp6I	CCWGG	2 cut(s)	49, 404
PspGI	CCWGG	2 cut(s)	49, 404
PspN4I	GGNNCC	2 cut(s)	465, 466
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	463, 464
PsrI	GAACNNNNNNTAC	2 cut(s)	104, 136
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	122, 170
RsaNI	GTAC	2 cut(s)	121, 169
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	210, 345
SatI	GCNGC	4 cut(s)	25, 318, 330, 453
Sau3AI	GATC	3 cut(s)	42, 248, 354
Sau96I	GGNCC	2 cut(s)	463, 464
ScrFI	CCNGG	2 cut(s)	51, 406
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	9 cut(s)	40, 55, 90, 122, 148, 276, 304, 410, 487
SfaNI	GCATC	2 cut(s)	69, 304
SmlI	CTYRAG	2 cut(s)	8, 198
SmoI	CTYRAG	2 cut(s)	8, 198
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	49, 404
StyI	CCWWGG	2 cut(s)	366, 468
TaaI	ACNGT	2 cut(s)	21, 208
TaqI	TCGA	2 cut(s)	247, 310
TasI	AATT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	80, 418
Tru1I	TTAA	2 cut(s)	210, 345
Tru9I	TTAA	2 cut(s)	210, 345
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	3 cut(s)	317, 329, 452
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.