Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002563.1

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Forward (+)

242856 .. 243504

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002563.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtcgtcccaacacgtcttcctccgagaaccgccggaggcagccatggttctcaagactgagctttgccgcttcagtggcgccaagatctaccctggtaggggcatcagattcatccgctccgattctcaggttaaaacttcacctctccttaatcgattcctatattcatcgtcttcaccgctaataatcctggacttgtggcttggtttaggttttcctgttcataaattccaagtgcaagaggactctgctcaagaatctgtgaagaagaagcgtcgtgccaccaagaagccttactcaaggtccattgttggtgccattttggaggtcatccagaagaggaggactgagaagcctgaggtcagtgatgctgctcgccaggccgctctctggtatgcaatgctattatgttttgcttcatttgacgaacttcatagatttggttctagatgtttttcgacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

155

Amino Acids

17.68

Weight (kDa)

9.96

Isoelectric Point (pI)

69.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 317
AccBSI	CCGCTC	2 cut(s)	120, 389
AciI	CCGC	5 cut(s)	32, 70, 118, 182, 387
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	3 cut(s)	100, 101, 393
AflIII	ACRYGT	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	3 cut(s)	94, 192, 381
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	41, 374
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	135, 171
AvaII	GGWCC	1 cut(s)	306
AxyI	CCTNAGG	1 cut(s)	360
BanI	GGYRCC	2 cut(s)	80, 317
BbsI	GAAGAC	2 cut(s)	10, 168
BbvI	GCAGC	2 cut(s)	53, 361
BciT130I	CCWGG	3 cut(s)	96, 194, 383
BfaI	CTAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	84
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	4 cut(s)	42, 70, 375, 387
BlsI	GCNGC	4 cut(s)	43, 71, 376, 388
Bme1390I	CCNGG	3 cut(s)	96, 194, 383
Bme18I	GGWCC	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	82, 319
BmrFI	CCNGG	3 cut(s)	96, 194, 383
BmsI	GCATC	2 cut(s)	114, 361
BpiI	GAAGAC	2 cut(s)	10, 168
BpuEI	CTTGAG	3 cut(s)	38, 240, 286
Bsa29I	ATCGAT	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	45, 94
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 101, 393
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	96, 194, 383
BseCI	ATCGAT	1 cut(s)	157
BseDI	CCNNGG	2 cut(s)	45, 94
BseGI	GGATG	2 cut(s)	114, 333
BseLI	CCNNNNNNNGG	3 cut(s)	100, 101, 393
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	4 cut(s)	51, 143, 342, 351
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	53, 361
BshFI	GGCC	1 cut(s)	386
BshNI	GGYRCC	2 cut(s)	80, 317
BshVI	ATCGAT	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	100, 101, 393
BsnI	GGCC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	5 cut(s)	32, 70, 118, 182, 387
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	4 cut(s)	52, 142, 343, 352
BspDI	ATCGAT	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	82, 319
BspT107I	GGYRCC	2 cut(s)	80, 317
BsrBI	CCGCTC	2 cut(s)	120, 389
BsrDI	GCAATG	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	45, 94
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	96, 194, 383
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	4 cut(s)	60, 129, 351, 360
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	114, 333
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 383
BstNI	CCWGG	3 cut(s)	96, 194, 383
BstSCI	CCNGG	3 cut(s)	94, 192, 381
BstV1I	GCAGC	2 cut(s)	53, 361
BstV2I	GAAGAC	2 cut(s)	10, 168
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	157
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	114, 333
BtsIMutI	CAGTG	2 cut(s)	82, 373
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	157
CseI	GACGC	1 cut(s)	266
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	6 cut(s)	44, 64, 205, 295, 358, 386
CviKI_1	RGCY	6 cut(s)	44, 64, 205, 295, 358, 386
DdeI	CTNAG	4 cut(s)	60, 129, 351, 360
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	360
EcoRII	CCWGG	3 cut(s)	94, 192, 381
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	49
FaiI	YATR	6 cut(s)	47, 166, 228, 399, 412, 438
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	42, 70, 375, 387
FokI	GGATG	2 cut(s)	101, 320
Fsp4HI	GCNGC	4 cut(s)	42, 70, 375, 387
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	4 cut(s)	42, 70, 375, 387
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	5 cut(s)	111, 125, 159, 248, 260
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	135, 171
Hpy188I	TCNGA	3 cut(s)	26, 110, 124
Hpy188III	TCNNGA	4 cut(s)	55, 257, 337, 450
Hpy99I	CGWCG	2 cut(s)	282, 466
HpyCH4IV	ACGT	2 cut(s)	15, 464
HpyCH4V	TGCA	2 cut(s)	241, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 383
HpyF3I	CTNAG	4 cut(s)	60, 129, 351, 360
HpySE526I	ACGT	2 cut(s)	15, 464
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	81
KasI	GGCGCC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	2 cut(s)	53, 361
LweI	GCATC	2 cut(s)	114, 361
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	2 cut(s)	15, 464
MalI	GATC	1 cut(s)	89
MbiI	CCGCTC	2 cut(s)	120, 389
MboI	GATC	1 cut(s)	87
MboII	GAAGA	5 cut(s)	10, 168, 280, 283, 352
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	230
Mly113I	GGCGCC	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	8 cut(s)	31, 32, 156, 238, 322, 336, 339, 355
MseI	TTAA	2 cut(s)	135, 153
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	3 cut(s)	96, 194, 383
MvaI	CCWGG	3 cut(s)	96, 194, 383
MwoI	GCNNNNNNNGC	2 cut(s)	78, 383
NarI	GGCGCC	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	82, 319
PfeI	GAWTC	4 cut(s)	111, 125, 159, 260
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	43, 71, 376, 388
PleI	GAGTC	1 cut(s)	242
PluTI	GGCGCC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	94, 192, 381
PspGI	CCWGG	3 cut(s)	94, 192, 381
PspN4I	GGNNCC	2 cut(s)	82, 319
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	135, 153
SatI	GCNGC	4 cut(s)	42, 70, 375, 387
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	96, 194, 383
SetI	ASST	9 cut(s)	18, 66, 135, 148, 217, 308, 333, 366, 467
SfaNI	GCATC	2 cut(s)	114, 361
SfoI	GGCGCC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	3 cut(s)	53, 255, 301
SmoI	CTYRAG	3 cut(s)	53, 255, 301
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	5 cut(s)	32, 70, 118, 182, 387
SspDI	GGCGCC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	94, 192, 381
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	2 cut(s)	18, 467
TaqI	TCGA	2 cut(s)	157, 461
TasI	AATT	1 cut(s)	230
TauI	GCSGC	2 cut(s)	72, 389
TfiI	GAWTC	4 cut(s)	111, 125, 159, 260
Tru1I	TTAA	2 cut(s)	135, 153
Tru9I	TTAA	2 cut(s)	135, 153
TscAI	CASTG	2 cut(s)	82, 373
TseI	GCWGC	2 cut(s)	41, 374
TspDTI	ATGAA	5 cut(s)	103, 159, 215, 411, 425
TspRI	CASTG	2 cut(s)	82, 373
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	449
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.