Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

58408401 .. 58408940

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG434000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCGTCCTGGCACGTCTTCCTCGGGGAACAGCCAGAGGCAGCCATGGTTCTCAAGATTGAGCTTTGCCGCTTCAGTGGCTCCAAGATCTACCCTAGTAGGGGCATCAGATTCATCCACTCCGATTCTCAGGTTTTCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTCCACAACCGCCTCAAGCCATCCAAGATCACATGGACTACTATGTTCAGAAAGCAGCACAAGAAGGACTCTACTCAAGAATCTGTGAAGAAGAAGCGTCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTGGAGGTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

108

Amino Acids

12.69

Weight (kDa)

10.48

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	18 - 82	2.8e-27	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AciI	CCGC	2 cut(s)	70, 178
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	100, 101
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	41, 223
ApoI	RAATTY	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	294
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	53, 235
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	10
BfaI	CTAG	2 cut(s)	96, 325
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	3 cut(s)	42, 70, 224
BlsI	GCNGC	3 cut(s)	43, 71, 225
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	82, 307
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	10
BpuEI	CTTGAG	4 cut(s)	38, 167, 228, 274
BsaJI	CCNNGG	2 cut(s)	22, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 101
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	22, 45
BseGI	GGATG	2 cut(s)	114, 188
BseLI	CCNNNNNNNGG	2 cut(s)	100, 101
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	53, 235
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	100, 101
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	87, 195
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	2 cut(s)	70, 178
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	82, 307
BspT107I	GGYRCC	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	22, 45
BssMI	GATC	2 cut(s)	87, 195
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	114, 188
BstKTI	GATC	2 cut(s)	90, 198
BstMBI	GATC	2 cut(s)	87, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	53, 235
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	114, 188
BtsIMutI	CAGTG	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	46, 201
CviJI	RGCY	6 cut(s)	34, 44, 64, 81, 187, 283
CviKI_1	RGCY	6 cut(s)	34, 44, 64, 81, 187, 283
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	89, 197
DpnII	GATC	2 cut(s)	87, 195
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	49, 204
FaiI	YATR	4 cut(s)	47, 146, 202, 212
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	2 cut(s)	45, 200
Fnu4HI	GCNGC	3 cut(s)	42, 70, 224
FokI	GGATG	2 cut(s)	101, 175
Fsp4HI	GCNGC	3 cut(s)	42, 70, 224
FspBI	CTAG	2 cut(s)	96, 325
GluI	GCNGC	3 cut(s)	42, 70, 224
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	49, 204
HinfI	GANTC	4 cut(s)	111, 125, 236, 248
Hpy188I	TCNGA	3 cut(s)	110, 124, 218
Hpy188III	TCNNGA	2 cut(s)	55, 245
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	49, 204
Kzo9I	GATC	2 cut(s)	87, 195
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	4 cut(s)	22, 48, 116, 152
Lsp1109I	GCAGC	2 cut(s)	53, 235
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	96, 325
MaeII	ACGT	1 cut(s)	15
MalI	GATC	2 cut(s)	89, 197
MboI	GATC	2 cut(s)	87, 195
MboII	GAAGA	3 cut(s)	10, 268, 271
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	5 cut(s)	31, 32, 156, 191, 310
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	87, 195
NlaIII	CATG	2 cut(s)	49, 204
NlaIV	GGNNCC	2 cut(s)	82, 307
PfeI	GAWTC	3 cut(s)	111, 125, 248
PkrI	GCNGC	3 cut(s)	43, 71, 225
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	82, 307
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	3 cut(s)	42, 70, 224
Sau3AI	GATC	2 cut(s)	87, 195
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	6 cut(s)	18, 66, 135, 167, 296, 321
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	294
SmlI	CTYRAG	4 cut(s)	53, 182, 243, 289
SmoI	CTYRAG	4 cut(s)	53, 182, 243, 289
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	2 cut(s)	70, 178
SspMI	CTAG	2 cut(s)	96, 325
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	18
TasI	AATT	1 cut(s)	148
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	111, 125, 248
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	41, 223
TspDTI	ATGAA	2 cut(s)	103, 133
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	148
XspI	CTAG	2 cut(s)	96, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.