Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

8684410 .. 8686069

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09804.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCCTCTGTCTACATTGGCCCTTGGTCTTCTTTTTGCAGGAAGTGGCGCCCAGATCTACCCTGGTAGGGGCATCAGATTCATCCGCTCCGATTCTCAGGTTTTTCTGTTCCTGAATTCCAAGTGTAAGAGGTACTTCCACGATCGCCTCAAGCCGTCCAAGATCACATGGACTGCTATGTTCAGGAAGCAGCACAAGAAGGACTCTGCTCAAGAGTCTGTGAAGAAGAAACGCCGCTCCGCCAAGAAGCCTTACTCGAGGTCCATTGTTAGCACAACTCTTGAGGTTATCCAGAAGAGAAGGATTGAGAAGCCTGAGGTCCTTGACGCCGCTCGCGAGGCCTCTCTCTGGTATTTCTTCGTTTCGTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

125

Amino Acids

14.44

Weight (kDa)

10.62

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	15 - 71	4.8e-23	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccBSI	CCGCTC	3 cut(s)	87, 237, 332
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	336
AciI	CCGC	4 cut(s)	85, 235, 240, 330
AcsI	RAATTY	1 cut(s)	115
AcyI	GRCGYC	2 cut(s)	48, 327
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	67, 68, 348
AjnI	CCWGG	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	18, 339
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	3 cut(s)	19, 261, 319
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	261, 319
AxyI	CCTNAGG	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	51
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	3 cut(s)	191, 235, 330
BlsI	GCNGC	3 cut(s)	192, 236, 331
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	2 cut(s)	261, 319
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	19, 261, 319
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	3 cut(s)	134, 195, 302
BsaHI	GRCGYC	2 cut(s)	48, 327
BsaJI	CCNNGG	2 cut(s)	22, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 68, 348
Bse21I	CCTNAGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	22, 61
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	67, 68, 348
BseMII	CTCAG	2 cut(s)	110, 306
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	20, 341
BshNI	GGYRCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	67, 68, 348
BsnI	GGCC	2 cut(s)	20, 341
BsoBI	CYCGRG	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	54, 142, 162
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	4 cut(s)	85, 235, 240, 330
BspANI	GGCC	2 cut(s)	20, 341
BspCNI	CTCAG	2 cut(s)	109, 307
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	47
BsrBI	CCGCTC	3 cut(s)	87, 237, 332
BssECI	CCNNGG	2 cut(s)	22, 61
BssMI	GATC	3 cut(s)	54, 142, 162
BssNI	GRCGYC	2 cut(s)	48, 327
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	2 cut(s)	48, 327
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	96, 315
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	57, 145, 165
BstMBI	GATC	3 cut(s)	54, 142, 162
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	20, 341
BtsCI	GGATG	1 cut(s)	81
BtuMI	TCGCGA	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	19, 261, 319
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	5 cut(s)	20, 154, 250, 313, 341
CviKI_1	RGCY	5 cut(s)	20, 154, 250, 313, 341
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	96, 315
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	3 cut(s)	56, 144, 164
DpnII	GATC	3 cut(s)	54, 142, 162
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	261, 319
Eco81I	CCTNAGG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	22
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	171
FaiI	YATR	2 cut(s)	169, 179
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	3 cut(s)	191, 235, 330
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	191, 235, 330
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	191, 235, 330
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	20, 341
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	48, 327
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	4 cut(s)	78, 92, 203, 215
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	77, 91
Hpy188III	TCNNGA	6 cut(s)	112, 184, 212, 281, 292, 335
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	193, 294
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	96, 315
Hsp92I	GRCGYC	2 cut(s)	48, 327
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
Kzo9I	GATC	3 cut(s)	54, 142, 162
LmnI	GCTCC	2 cut(s)	92, 242
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	81
MalI	GATC	3 cut(s)	56, 144, 164
MbiI	CCGCTC	3 cut(s)	87, 237, 332
MboI	GATC	3 cut(s)	54, 142, 162
MboII	GAAGA	5 cut(s)	20, 235, 238, 307, 349
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	1 cut(s)	115
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	197, 224
MnlI	CCTC	8 cut(s)	15, 123, 158, 252, 277, 310, 331, 352
MseI	TTAA	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	338
NarI	GGCGCC	1 cut(s)	48
NdeII	GATC	3 cut(s)	54, 142, 162
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	49
NruI	TCGCGA	1 cut(s)	336
PaeR7I	CTCGAG	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	78, 92
PkrI	GCNGC	3 cut(s)	192, 236, 331
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	2 cut(s)	197, 223
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	2 cut(s)	197, 223
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	19, 261, 319
PspPPI	RGGWCCY	1 cut(s)	319
PspXI	VCTCGAGB	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	54
PvuI	CGATCG	1 cut(s)	145
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	3 cut(s)	191, 235, 330
Sau3AI	GATC	3 cut(s)	54, 142, 162
Sau96I	GGNCC	3 cut(s)	19, 261, 319
SchI	GAGTC	2 cut(s)	197, 224
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	5 cut(s)	102, 134, 263, 288, 321
SfaNI	GCATC	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	256
SinI	GGWCC	2 cut(s)	261, 319
SlaI	CTCGAG	1 cut(s)	256
SmlI	CTYRAG	4 cut(s)	149, 210, 256, 281
SmoI	CTYRAG	4 cut(s)	149, 210, 256, 281
Sse9I	AATT	1 cut(s)	115
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	4 cut(s)	85, 235, 240, 330
SspDI	GGCGCC	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	22
TaqI	TCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	115
TauI	GCSGC	2 cut(s)	237, 332
TfiI	GAWTC	2 cut(s)	78, 92
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	70, 359
VpaK11BI	GGWCC	2 cut(s)	261, 319
XapI	RAATTY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.