Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

51928242 .. 51933134

Gene Structure 4893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG380500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCGTCCCGGCACATCTTCCTCCAGGAACCGCAGGAGGCAGCCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGTGCCAAGATCTACCCTGGTAGGGGCATCAGATTCATCCGCTCCGATTCTCAGGTTTTCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTCCACAACCGCCTCAAGCCGTCCAAGATCACATGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGACTCTGCTCAAGAATCTGTGAAGAAGAAGCGCCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTAGAGGTCATCCAGAAGAGAAGGACTGAGAAGCCTGAGGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCATATCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGACTCTCTGATACAGCAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTACATCAAGTATTCAAGGCTGCCAGAACCATCAACGAAAGTGTTCTTGAAATGCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAGATGAGCAAAACCGCCTCAAAGCTCAAGTCTTTAACATCTCAAGTCCTCCATTTTCAAAAAGCAAGCTTCTTTACTGCAGCATTTGCAGATTGTGAAGAAGAAGAACCACAATACCCAAACAGACCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

249

Amino Acids

28.6

Weight (kDa)

10.15

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	18 - 82	1.2e-27	Ribosomal protein L24e
PRONE	PF03759	118 - 211	1.5e-28	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	469
AccB1I	GGYRCC	3 cut(s)	80, 305, 469
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	5 cut(s)	32, 70, 118, 178, 630
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	58
AfaI	GTAC	3 cut(s)	167, 471, 531
AfiI	CCNNNNNNNGG	4 cut(s)	100, 101, 479, 600
AgsI	TTSAA	4 cut(s)	366, 544, 578, 674
AjnI	CCWGG	2 cut(s)	24, 94
AluBI	AGCT	4 cut(s)	64, 476, 640, 684
AluI	AGCT	4 cut(s)	64, 476, 640, 684
AlwNI	CAGNNNCTG	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	41, 223, 548, 695
ApoI	RAATTY	1 cut(s)	148
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
Asp700I	GAANNNNTTC	1 cut(s)	570
Asp718I	GGTACC	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	294
AxyI	CCTNAGG	2 cut(s)	348, 465
BanI	GGYRCC	3 cut(s)	80, 305, 469
BbvI	GCAGC	4 cut(s)	53, 235, 535, 707
BccI	CCATC	3 cut(s)	441, 466, 566
BceAI	ACGGC	2 cut(s)	172, 252
BciT130I	CCWGG	2 cut(s)	26, 96
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	5 cut(s)	42, 70, 224, 549, 696
BlsI	GCNGC	5 cut(s)	43, 71, 225, 550, 697
Bme1390I	CCNGG	3 cut(s)	10, 26, 96
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	5 cut(s)	30, 82, 307, 455, 471
BmrFI	CCNGG	3 cut(s)	10, 26, 96
BmsI	GCATC	2 cut(s)	114, 595
BpmI	CTGGAG	1 cut(s)	8
BpuEI	CTTGAG	6 cut(s)	38, 167, 228, 274, 626, 642
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	45, 94
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 101, 479, 600
Bse1I	ACTGG	1 cut(s)	484
Bse21I	CCTNAGG	2 cut(s)	348, 465
BseBI	CCWGG	2 cut(s)	26, 96
BseDI	CCNNGG	2 cut(s)	45, 94
BseGI	GGATG	3 cut(s)	114, 321, 610
BseLI	CCNNNNNNNGG	4 cut(s)	100, 101, 479, 600
BseMII	CTCAG	6 cut(s)	51, 143, 330, 339, 369, 479
BseNI	ACTGG	1 cut(s)	484
BseXI	GCAGC	4 cut(s)	53, 235, 535, 707
BshNI	GGYRCC	3 cut(s)	80, 305, 469
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	4 cut(s)	100, 101, 479, 600
Bsp143I	GATC	2 cut(s)	87, 195
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	5 cut(s)	32, 70, 118, 178, 630
BspCNI	CTCAG	6 cut(s)	52, 142, 331, 340, 370, 478
BspLI	GGNNCC	5 cut(s)	30, 82, 307, 455, 471
BspMAI	CTGCAG	1 cut(s)	697
BspT107I	GGYRCC	3 cut(s)	80, 305, 469
BsrBI	CCGCTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	45, 94
BssMI	GATC	2 cut(s)	87, 195
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	26, 96
Bst6I	CTCTTC	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	6 cut(s)	60, 129, 339, 348, 378, 465
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	114, 321, 610
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	90, 198
BstMBI	GATC	2 cut(s)	87, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	2 cut(s)	26, 96
BstSCI	CCNGG	3 cut(s)	8, 24, 94
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	4 cut(s)	53, 235, 535, 707
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu36I	CCTNAGG	2 cut(s)	348, 465
BsuI	GTATCC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	114, 321, 610
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	682
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	166, 470, 530
CviAII	CATG	3 cut(s)	46, 201, 211
CviQI	GTAC	3 cut(s)	166, 470, 530
DdeI	CTNAG	6 cut(s)	60, 129, 339, 348, 378, 465
DpnI	GATC	2 cut(s)	89, 197
DpnII	GATC	2 cut(s)	87, 195
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	58
Eco81I	CCTNAGG	2 cut(s)	348, 465
EcoRII	CCWGG	2 cut(s)	24, 94
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 204, 214
FaiI	YATR	6 cut(s)	47, 146, 202, 212, 390, 433
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	45, 200, 210
Fnu4HI	GCNGC	5 cut(s)	42, 70, 224, 549, 696
FokI	GGATG	3 cut(s)	101, 308, 617
Fsp4HI	GCNGC	5 cut(s)	42, 70, 224, 549, 696
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	5 cut(s)	42, 70, 224, 549, 696
GsuI	CTGGAG	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	268
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	49, 204, 214
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	6 cut(s)	111, 125, 236, 248, 362, 483
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	453
Hpy188I	TCNGA	5 cut(s)	110, 124, 218, 438, 490
Hpy188III	TCNNGA	4 cut(s)	55, 245, 325, 575
HpyAV	CCTTC	4 cut(s)	226, 327, 389, 407
HpyCH4V	TGCA	4 cut(s)	159, 608, 695, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	6 cut(s)	60, 129, 339, 348, 378, 465
Hsp92II	CATG	3 cut(s)	49, 204, 214
HspAI	GCGC	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	87, 195
LmnI	GCTCC	2 cut(s)	125, 459
Lsp1109I	GCAGC	4 cut(s)	53, 235, 535, 707
LweI	GCATC	2 cut(s)	114, 595
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	89, 197
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	2 cut(s)	87, 195
MboII	GAAGA	7 cut(s)	10, 268, 271, 340, 725, 728, 731
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	2 cut(s)	230, 477
MnlI	CCTC	9 cut(s)	31, 32, 156, 191, 310, 343, 474, 643, 674
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	2 cut(s)	513, 650
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	3 cut(s)	10, 26, 96
MvaI	CCWGG	2 cut(s)	26, 96
MwoI	GCNNNNNNNGC	1 cut(s)	701
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	87, 195
NlaIII	CATG	3 cut(s)	49, 204, 214
NlaIV	GGNNCC	5 cut(s)	30, 82, 307, 455, 471
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	4 cut(s)	111, 125, 248, 362
PflMI	CCANNNNNTGG	1 cut(s)	479
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	5 cut(s)	43, 71, 225, 550, 697
PleI	GAGTC	2 cut(s)	230, 477
PpsI	GAGTC	2 cut(s)	230, 477
Psp6I	CCWGG	2 cut(s)	24, 94
PspGI	CCWGG	2 cut(s)	24, 94
PspN4I	GGNNCC	5 cut(s)	30, 82, 307, 455, 471
PspPI	GGNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	3 cut(s)	167, 471, 531
RsaNI	GTAC	3 cut(s)	166, 470, 530
SaqAI	TTAA	2 cut(s)	513, 650
SatI	GCNGC	5 cut(s)	42, 70, 224, 549, 696
Sau3AI	GATC	2 cut(s)	87, 195
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	2 cut(s)	230, 477
ScrFI	CCNGG	3 cut(s)	10, 26, 96
SfaNI	GCATC	2 cut(s)	114, 595
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	294
SmlI	CTYRAG	6 cut(s)	53, 182, 243, 289, 641, 657
SmoI	CTYRAG	6 cut(s)	53, 182, 243, 289, 641, 657
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	5 cut(s)	32, 70, 118, 178, 630
StyD4I	CCNGG	3 cut(s)	8, 24, 94
StyI	CCWWGG	1 cut(s)	45
TasI	AATT	1 cut(s)	148
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	4 cut(s)	111, 125, 248, 362
Tru1I	TTAA	2 cut(s)	513, 650
Tru9I	TTAA	2 cut(s)	513, 650
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	4 cut(s)	41, 223, 548, 695
TspDTI	ATGAA	2 cut(s)	103, 133
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.