Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

11786145 .. 11788071

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTCTCAAGACGGAACTCTGTCGTTTCAGCGGTGACAAGATATACCCAGGAAGAGGCATCAGATTTATTCGATCTGATTCTCAGGTGTTCCTTTTTGCCAACTCCAAATGCAAAAGGTACTTTCACAACAAGCTGAAGCCGTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAAAAGGATATTGCTCAAGAAGCTGTGAAGAAGAGGAGACGGGCCACCAAGAAGCCTTACTCAAGGTCTATTGTCGGTGCTACCCTGGAGGTTATCCAGAAGAGAAGAACTGAGAAGCCAGAAGTTCGTGATGCTGCACGTGAAGCTGCACTTCGTGAAATTAAGGAACGAATCAAGAAGACCAAAGATGAGAAGAAGGCCAAGAAGGCAGAAGTAACGAAATCTCAGAAGACTCAAGGCAAGGGCAGCATTCCCAAGGGAGGTGCACCCAAGGGACCAAAGCTTGGTGGTGGTGGCGGCAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

164

Amino Acids

18.54

Weight (kDa)

10.7

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	467
AciI	CCGC	2 cut(s)	33, 480
AcuI	CTGAAG	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	122, 170
AfiI	CCNNNNNNNGG	4 cut(s)	56, 171, 443, 467
AjnI	CCWGG	3 cut(s)	49, 155, 267
AluBI	AGCT	5 cut(s)	136, 151, 206, 329, 466
AluI	AGCT	5 cut(s)	136, 151, 206, 329, 466
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	214
Alw44I	GTGCAC	1 cut(s)	447
AoxI	GGCC	2 cut(s)	225, 381
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	4 cut(s)	178, 317, 329, 429
AspS9I	GGNCC	2 cut(s)	225, 458
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	451
BbrPI	CACGTG	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	368, 419
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	4 cut(s)	190, 304, 316, 441
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	3 cut(s)	51, 157, 269
BcoDI	GTCTC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	5 cut(s)	179, 318, 330, 430, 481
BlsI	GCNGC	5 cut(s)	180, 319, 331, 431, 482
Bme1390I	CCNGG	3 cut(s)	51, 157, 269
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	225, 458
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	3 cut(s)	51, 157, 269
BmsI	GCATC	2 cut(s)	69, 304
BpiI	GAAGAC	2 cut(s)	368, 419
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	3 cut(s)	183, 229, 402
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	4 cut(s)	49, 267, 438, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 171, 443, 467
BseBI	CCWGG	3 cut(s)	51, 157, 269
BseDI	CCNNGG	4 cut(s)	49, 267, 438, 453
BseLI	CCNNNNNNNGG	4 cut(s)	56, 171, 443, 467
BseMII	CTCAG	3 cut(s)	98, 285, 422
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	190, 304, 316, 441
BsgI	GTGCAG	2 cut(s)	303, 315
BshFI	GGCC	2 cut(s)	227, 383
BsiHKAI	GWGCWC	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	4 cut(s)	56, 171, 443, 467
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	227, 383
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	74
BspACI	CCGC	2 cut(s)	33, 480
BspANI	GGCC	2 cut(s)	227, 383
BspCNI	CTCAG	3 cut(s)	97, 286, 421
BspLI	GGNNCC	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	49, 267, 438, 453
BssMI	GATC	1 cut(s)	74
BssT1I	CCWWGG	2 cut(s)	438, 453
Bst2UI	CCWGG	3 cut(s)	51, 157, 269
Bst6I	CTCTTC	3 cut(s)	49, 209, 278
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	84, 294, 408
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 203, 326, 389, 429
BstNI	CCWGG	3 cut(s)	51, 157, 269
BstSCI	CCNGG	3 cut(s)	49, 155, 267
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	4 cut(s)	190, 304, 316, 441
BstV2I	GAAGAC	2 cut(s)	368, 419
BsuRI	GGCC	2 cut(s)	227, 383
Cac8I	GCNNGC	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	225, 458
Csp6I	GTAC	2 cut(s)	121, 169
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	2 cut(s)	121, 169
DdeI	CTNAG	3 cut(s)	84, 294, 408
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
DraIII	CACNNNGTG	1 cut(s)	338
Eam1104I	CTCTTC	3 cut(s)	49, 209, 278
EarI	CTCTTC	3 cut(s)	49, 209, 278
Eco130I	CCWWGG	2 cut(s)	438, 453
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	158
Eco72I	CACGTG	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	49, 155, 267
EcoT14I	CCWWGG	2 cut(s)	438, 453
ErhI	CCWWGG	2 cut(s)	438, 453
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	46, 167
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	5 cut(s)	179, 318, 330, 430, 481
Fsp4HI	GCNGC	5 cut(s)	179, 318, 330, 430, 481
GluI	GCNGC	5 cut(s)	179, 318, 330, 430, 481
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	227, 383
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	2 cut(s)	149, 464
HinfI	GANTC	3 cut(s)	80, 354, 415
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	3 cut(s)	65, 79, 411
Hpy188III	TCNNGA	6 cut(s)	10, 200, 280, 311, 338, 358
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	373, 382
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	114, 320, 332, 449
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 203, 326, 389, 429
HpyF3I	CTNAG	3 cut(s)	84, 294, 408
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	74
Lsp1109I	GCAGC	4 cut(s)	190, 304, 316, 441
LweI	GCATC	2 cut(s)	69, 304
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	35, 397
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	8 cut(s)	66, 223, 226, 295, 300, 373, 388, 424
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	4 cut(s)	50, 210, 265, 437
MseI	TTAA	2 cut(s)	345, 490
MspA1I	CMGCKG	1 cut(s)	33
MspR9I	CCNGG	3 cut(s)	51, 157, 269
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	3 cut(s)	51, 157, 269
MwoI	GCNNNNNNNGC	5 cut(s)	148, 203, 326, 389, 429
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	35
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	80, 354
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	5 cut(s)	180, 319, 331, 431, 482
PleI	GAGTC	1 cut(s)	409
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	49, 155, 267
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	3 cut(s)	49, 155, 267
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	225, 458
RsaI	GTAC	2 cut(s)	122, 170
RsaNI	GTAC	2 cut(s)	121, 169
SaqAI	TTAA	2 cut(s)	345, 490
SatI	GCNGC	5 cut(s)	179, 318, 330, 430, 481
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	2 cut(s)	225, 458
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	3 cut(s)	51, 157, 269
SduI	GDGCHC	1 cut(s)	451
SfaNI	GCATC	2 cut(s)	69, 304
SinI	GGWCC	1 cut(s)	458
SmlI	CTYRAG	4 cut(s)	8, 198, 244, 417
SmoI	CTYRAG	4 cut(s)	8, 198, 244, 417
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	33, 480
StyD4I	CCNGG	3 cut(s)	49, 155, 267
StyI	CCWWGG	2 cut(s)	438, 453
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	80, 354
Tru1I	TTAA	2 cut(s)	345, 490
Tru9I	TTAA	2 cut(s)	345, 490
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	178, 317, 329, 429
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	467
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.