Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

43821095 .. 43821760

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG364000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGTCCCGGCACGTCTTCCTCCGGGAACCGCCGGAGGCAGCCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGCGCCAAGATTTACCCTGGTAGGGGCATCAGATTCATCCGCTCTGATTCTCAGGTTTTCTTGTTCATAAATTCCAAGTGCAAGAGGTACTTCCACAACCGCCTCAAGCCATCCAAGATCACATGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGACTCTGCTCAAGAATCTGTGAAGAAGAAGCGCCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTGGTCCATCAGATGAGGAGGACTGAGAAGCCTGAGGTCCGTGATGCTGCTCGCGAGGCCGCTCTCTGGTTTGCAATGCTATTATGTTTTGCTTCATTTGATGAACTTCATAGATTTGATTCTAGGTGTTTTTCGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

150

Amino Acids

17.65

Weight (kDa)

10.6

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	18 - 82	4.2e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 305
AccBSI	CCGCTC	2 cut(s)	120, 374
AccII	CGCG	1 cut(s)	366
AciI	CCGC	5 cut(s)	32, 70, 118, 178, 372
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	100, 101, 378
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	41, 223, 359
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	83, 267
AspS9I	GGNCC	3 cut(s)	294, 316, 349
AsuC2I	CCSGG	2 cut(s)	10, 26
AvaII	GGWCC	3 cut(s)	294, 316, 349
AxyI	CCTNAGG	1 cut(s)	345
BanI	GGYRCC	2 cut(s)	80, 305
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	53, 235, 346
BccI	CCATC	2 cut(s)	196, 327
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	2 cut(s)	10, 26
BfaI	CTAG	1 cut(s)	435
BfoI	RGCGCY	2 cut(s)	84, 268
BisI	GCNGC	5 cut(s)	42, 70, 224, 360, 372
BlsI	GCNGC	5 cut(s)	43, 71, 225, 361, 373
Bme1390I	CCNGG	3 cut(s)	10, 26, 96
Bme18I	GGWCC	3 cut(s)	294, 316, 349
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	3 cut(s)	294, 316, 349
BmiI	GGNNCC	3 cut(s)	30, 82, 307
BmrFI	CCNGG	3 cut(s)	10, 26, 96
BmsI	GCATC	2 cut(s)	114, 346
BpiI	GAAGAC	1 cut(s)	10
BpuEI	CTTGAG	4 cut(s)	38, 167, 228, 274
BpuMI	CCSGG	2 cut(s)	10, 26
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	45, 94
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 101, 378
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	45, 94
BseGI	GGATG	2 cut(s)	114, 188
BseLI	CCNNNNNNNGG	3 cut(s)	100, 101, 378
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	4 cut(s)	51, 143, 327, 336
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	3 cut(s)	53, 235, 346
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	2 cut(s)	80, 305
BsiSI	CCGG	3 cut(s)	10, 25, 35
BslI	CCNNNNNNNGG	3 cut(s)	100, 101, 378
BsnI	GGCC	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	366
BspACI	CCGC	5 cut(s)	32, 70, 118, 178, 372
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	4 cut(s)	52, 142, 328, 337
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	30, 82, 307
BspT107I	GGYRCC	2 cut(s)	80, 305
BsrBI	CCGCTC	2 cut(s)	120, 374
BsrDI	GCAATG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	45, 94
BssMI	GATC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	4 cut(s)	60, 129, 336, 345
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	114, 188
BstFNI	CGCG	1 cut(s)	366
BstH2I	RGCGCY	2 cut(s)	84, 268
BstHHI	GCGC	2 cut(s)	83, 267
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 368
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	3 cut(s)	8, 24, 94
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	53, 235, 346
BstV2I	GAAGAC	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	114, 188
BtsIMutI	CAGTG	1 cut(s)	82
BtuMI	TCGCGA	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	2 cut(s)	83, 267
Cfr13I	GGNCC	3 cut(s)	294, 316, 349
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	46, 201, 211
CviJI	RGCY	6 cut(s)	44, 64, 187, 283, 343, 371
CviKI_1	RGCY	6 cut(s)	44, 64, 187, 283, 343, 371
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	60, 129, 336, 345
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	3 cut(s)	294, 316, 349
Eco57I	CTGAAG	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 204, 214
FaiI	YATR	6 cut(s)	47, 146, 202, 212, 397, 423
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	45, 200, 210
Fnu4HI	GCNGC	5 cut(s)	42, 70, 224, 360, 372
FokI	GGATG	2 cut(s)	101, 175
Fsp4HI	GCNGC	5 cut(s)	42, 70, 224, 360, 372
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	2 cut(s)	82, 266
GluI	GCNGC	5 cut(s)	42, 70, 224, 360, 372
HaeII	RGCGCY	2 cut(s)	84, 268
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	3 cut(s)	10, 25, 35
HhaI	GCGC	2 cut(s)	83, 267
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	49, 204, 214
Hin6I	GCGC	2 cut(s)	81, 265
HinP1I	GCGC	2 cut(s)	81, 265
HinfI	GANTC	5 cut(s)	111, 125, 236, 248, 431
HpaII	CCGG	3 cut(s)	10, 25, 35
Hpy188I	TCNGA	4 cut(s)	110, 124, 218, 324
Hpy188III	TCNNGA	3 cut(s)	55, 245, 365
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	15, 449
HpyCH4V	TGCA	2 cut(s)	159, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 368
HpyF3I	CTNAG	4 cut(s)	60, 129, 336, 345
HpySE526I	ACGT	2 cut(s)	15, 449
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	49, 204, 214
HspAI	GCGC	2 cut(s)	81, 265
KasI	GGCGCC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	195
LpnPI	CCDG	8 cut(s)	23, 38, 48, 81, 108, 116, 357, 364
Lsp1109I	GCAGC	3 cut(s)	53, 235, 346
LweI	GCATC	2 cut(s)	114, 346
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	15, 449
MalI	GATC	1 cut(s)	197
MbiI	CCGCTC	2 cut(s)	120, 374
MboI	GATC	1 cut(s)	195
MboII	GAAGA	3 cut(s)	10, 268, 271
MluCI	AATT	1 cut(s)	148
Mly113I	GGCGCC	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	8 cut(s)	31, 32, 156, 191, 321, 324, 340, 361
MspI	CCGG	3 cut(s)	10, 25, 35
MspR9I	CCNGG	3 cut(s)	10, 26, 96
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	78, 368
NarI	GGCGCC	1 cut(s)	81
NciI	CCSGG	2 cut(s)	10, 26
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	3 cut(s)	49, 204, 214
NlaIV	GGNNCC	3 cut(s)	30, 82, 307
NruI	TCGCGA	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	111, 125, 248, 431
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	5 cut(s)	43, 71, 225, 361, 373
PleI	GAGTC	1 cut(s)	230
PluTI	GGCGCC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	30, 82, 307
PspPI	GGNCC	3 cut(s)	294, 316, 349
RruI	TCGCGA	1 cut(s)	366
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	5 cut(s)	42, 70, 224, 360, 372
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	3 cut(s)	294, 316, 349
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	10, 26, 96
SetI	ASST	8 cut(s)	18, 66, 135, 167, 296, 351, 440, 452
SfaNI	GCATC	2 cut(s)	114, 346
SfoI	GGCGCC	1 cut(s)	82
SinI	GGWCC	3 cut(s)	294, 316, 349
SmlI	CTYRAG	4 cut(s)	53, 182, 243, 289
SmoI	CTYRAG	4 cut(s)	53, 182, 243, 289
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	5 cut(s)	32, 70, 118, 178, 372
SspDI	GGCGCC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	3 cut(s)	8, 24, 94
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	2 cut(s)	18, 452
TaqI	TCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	148
TauI	GCSGC	2 cut(s)	72, 374
TfiI	GAWTC	4 cut(s)	111, 125, 248, 431
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	3 cut(s)	41, 223, 359
TspDTI	ATGAA	5 cut(s)	103, 133, 396, 410, 429
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	3 cut(s)	294, 316, 349
XapI	RAATTY	1 cut(s)	148
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.