Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Forward (+)

86410 .. 87539

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggttctcaagactgagctttgccgcttcagtggcgccaagatctaccctggtagaggcatcagattcatccgctccgattctcaggttttcctgttcgtgaattccaagtgcaagaggtacttccacaaccgcctcaagccgtccaagatcacatggactgccatgttcaggaagcagcacaagaaggactctgctcaagaatctgtgaagaagaagcgccgtgccaccaagaagccttactcaaggtccattgttggtgccactttggaggtcatccagaagaggaggaccgagaagcctgaggtccgtgacgctgctcgcgaggccgctctccgattagaaatttggggtgtgttcgacatcgtatttgaattggtggttcatatggtgcaagatttgtattgtatttctgatgctcatgtgtgtattttcagtgagattaaggagagaatcaagaagaccaaggatgagaagaaggcaaagaaagcagaaatcacagccaagtcaagcaagcctaccaagggtagtctgtccaaggctgcagcccccaagggccccaagcttggtggtggaggtggaaagcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

196

Amino Acids

22.3

Weight (kDa)

10.33

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 260
AccBSI	CCGCTC	2 cut(s)	75, 332
AccII	CGCG	1 cut(s)	324
AciI	CCGC	4 cut(s)	25, 73, 133, 330
AcsI	RAATTY	2 cut(s)	103, 345
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	4 cut(s)	56, 171, 524, 566
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	19, 565
AluI	AGCT	2 cut(s)	19, 565
AoxI	GGCC	2 cut(s)	327, 556
ApaI	GGGCCC	1 cut(s)	560
ApeKI	GCWGC	4 cut(s)	178, 317, 542, 545
ApoI	RAATTY	2 cut(s)	103, 345
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspLEI	GCGC	2 cut(s)	38, 222
AspS9I	GGNCC	5 cut(s)	249, 291, 307, 556, 557
AvaII	GGWCC	3 cut(s)	249, 291, 307
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	560
BanI	GGYRCC	2 cut(s)	35, 260
BanII	GRGCYC	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	467
BbvI	GCAGC	4 cut(s)	190, 304, 529, 557
BceAI	ACGGC	2 cut(s)	127, 207
BciT130I	CCWGG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	2 cut(s)	39, 223
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	6 cut(s)	25, 179, 318, 330, 543, 546
BlsI	GCNGC	6 cut(s)	26, 180, 319, 331, 544, 547
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	3 cut(s)	249, 291, 307
BmgT120I	GGNCC	5 cut(s)	249, 291, 307, 556, 557
BmiI	GGNNCC	4 cut(s)	37, 262, 558, 559
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	69, 406
BpiI	GAAGAC	1 cut(s)	467
BpuEI	CTTGAG	3 cut(s)	122, 183, 229
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	5 cut(s)	49, 465, 522, 537, 552
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 171, 524, 566
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	49, 465, 522, 537, 552
BseGI	GGATG	3 cut(s)	69, 276, 475
BseLI	CCNNNNNNNGG	4 cut(s)	56, 171, 524, 566
BseMII	CTCAG	3 cut(s)	6, 98, 294
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	4 cut(s)	190, 304, 529, 557
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	329, 558
BshNI	GGYRCC	2 cut(s)	35, 260
BslI	CCNNNNNNNGG	4 cut(s)	56, 171, 524, 566
BsnI	GGCC	2 cut(s)	329, 558
Bsp120I	GGGCCC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	42, 150
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	4 cut(s)	25, 73, 133, 330
BspANI	GGCC	2 cut(s)	329, 558
BspCNI	CTCAG	3 cut(s)	7, 97, 295
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	37, 262, 558, 559
BspMAI	CTGCAG	1 cut(s)	547
BspT107I	GGYRCC	2 cut(s)	35, 260
BsrBI	CCGCTC	2 cut(s)	75, 332
BssECI	CCNNGG	5 cut(s)	49, 465, 522, 537, 552
BssMI	GATC	2 cut(s)	42, 150
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	4 cut(s)	465, 522, 537, 552
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	322, 515
BstDEI	CTNAG	3 cut(s)	15, 84, 303
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	69, 276, 475
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	2 cut(s)	39, 223
BstHHI	GCGC	2 cut(s)	38, 222
BstKTI	GATC	2 cut(s)	45, 153
BstMBI	GATC	2 cut(s)	42, 150
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 326, 488
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	560
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	4 cut(s)	190, 304, 529, 557
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	329, 558
BtsCI	GGATG	3 cut(s)	69, 276, 475
BtsIMutI	CAGTG	2 cut(s)	37, 442
BtuMI	TCGCGA	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	322, 515
CfoI	GCGC	2 cut(s)	38, 222
Cfr13I	GGNCC	5 cut(s)	249, 291, 307, 556, 557
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	3 cut(s)	156, 166, 422
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	15, 84, 303
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	44, 152
DpnII	GATC	2 cut(s)	42, 150
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	4 cut(s)	465, 522, 537, 552
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	3 cut(s)	249, 291, 307
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	556, 557
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	4 cut(s)	465, 522, 537, 552
EcoT38I	GRGCYC	1 cut(s)	560
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	4 cut(s)	465, 522, 537, 552
FaeI	CATG	3 cut(s)	159, 169, 425
FaiI	YATR	5 cut(s)	157, 167, 387, 389, 423
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	3 cut(s)	155, 165, 421
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	25, 179, 318, 330, 543, 546
FokI	GGATG	3 cut(s)	56, 263, 482
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	6 cut(s)	25, 179, 318, 330, 543, 546
GlaI	GCGC	2 cut(s)	37, 221
GluI	GCNGC	6 cut(s)	25, 179, 318, 330, 543, 546
HaeII	RGCGCY	2 cut(s)	39, 223
HaeIII	GGCC	2 cut(s)	329, 558
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	38, 222
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	159, 169, 425
Hin6I	GCGC	2 cut(s)	36, 220
HinP1I	GCGC	2 cut(s)	36, 220
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	5 cut(s)	66, 80, 191, 203, 453
Hpy188I	TCNGA	4 cut(s)	65, 79, 338, 415
Hpy188III	TCNNGA	7 cut(s)	10, 100, 172, 200, 280, 323, 457
HpyAV	CCTTC	2 cut(s)	181, 472
HpyCH4V	TGCA	3 cut(s)	114, 394, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 326, 488
HpyF3I	CTNAG	3 cut(s)	15, 84, 303
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	159, 169, 425
HspAI	GCGC	2 cut(s)	36, 220
KasI	GGCGCC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	42, 150
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	36, 63, 71, 107, 157, 293, 315
Lsp1109I	GCAGC	4 cut(s)	190, 304, 529, 557
LweI	GCATC	2 cut(s)	69, 406
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	44, 152
MbiI	CCGCTC	2 cut(s)	75, 332
MboI	GATC	2 cut(s)	42, 150
MboII	GAAGA	5 cut(s)	223, 226, 295, 472, 487
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	3 cut(s)	103, 345, 374
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	9 cut(s)	50, 111, 146, 265, 279, 282, 298, 319, 569
MseI	TTAA	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	33, 326, 488
NarI	GGCGCC	1 cut(s)	36
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	2 cut(s)	42, 150
NlaIII	CATG	3 cut(s)	159, 169, 425
NlaIV	GGNNCC	4 cut(s)	37, 262, 558, 559
NmuCI	GTSAC	1 cut(s)	311
NruI	TCGCGA	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	4 cut(s)	66, 80, 203, 453
PkrI	GCNGC	6 cut(s)	26, 180, 319, 331, 544, 547
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	37, 262, 558, 559
PspOMI	GGGCCC	1 cut(s)	556
PspPI	GGNCC	5 cut(s)	249, 291, 307, 556, 557
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	42
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	6 cut(s)	25, 179, 318, 330, 543, 546
Sau3AI	GATC	2 cut(s)	42, 150
Sau96I	GGNCC	5 cut(s)	249, 291, 307, 556, 557
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	8 cut(s)	21, 90, 122, 251, 276, 309, 567, 580
SfaNI	GCATC	2 cut(s)	69, 406
SfcI	CTRYAG	1 cut(s)	543
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	3 cut(s)	249, 291, 307
SmlI	CTYRAG	4 cut(s)	8, 137, 198, 244
SmoI	CTYRAG	4 cut(s)	8, 137, 198, 244
Sse9I	AATT	3 cut(s)	103, 345, 374
SsiI	CCGC	4 cut(s)	25, 73, 133, 330
SspDI	GGCGCC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	4 cut(s)	465, 522, 537, 552
TaqI	TCGA	1 cut(s)	360
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	3 cut(s)	103, 345, 374
TauI	GCSGC	2 cut(s)	27, 332
TfiI	GAWTC	4 cut(s)	66, 80, 203, 453
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	37, 442
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	4 cut(s)	178, 317, 542, 545
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	58, 374
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	37, 442
VpaK11BI	GGWCC	3 cut(s)	249, 291, 307
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	103, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.