Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

32161778 .. 32163154

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTGCTGGGTTTCTACTCCTGATGGGTCCTGTCCTTCCATTCTTGGCGGCGTGACCGAACTCTGTAGGTTCAGTGGAGCGAAGATCTACCCTGGCAGAGGCATCAGATTTATCCGGTCTGATTCTCAGGTGTTCCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAATCGGTTGAAGCCATCTAAGATTACCTGGACAGCCATGTATAGGAAGCAACACAAGAAGGATATTGCTCAAGAATCTGTTAAGAAGAGGAGACGTGCCAATAAGAAGCCTTATTCAAGGTCAATAGTTGGTGCCACCCTGGAGGTTATCCAGAAGAGGAGGACTGAAAAGCCTGAAGTTCGTGATGCTGCCCGTGAGGCCGCACTCCGTGAAATCAAGGAAAGGATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCAGAAGTTGTTGCCAAACAGAAGAGCAAGGTTCAGAATATTTCCAAGGGAGCTGCTGCCCCCAAGGGTCCCAAGCTTGGCGGTGGCGGCGGCAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

10.6

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	19 - 81	9.8e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AciI	CCGC	5 cut(s)	48, 372, 513, 519, 522
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	366
AdeI	CACNNNGTG	1 cut(s)	380
AfaI	GTAC	1 cut(s)	164
AfeI	AGCGCT	1 cut(s)	530
AfiI	CCNNNNNNNGG	3 cut(s)	98, 213, 509
AgsI	TTSAA	3 cut(s)	150, 181, 288
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	3 cut(s)	91, 197, 309
AluBI	AGCT	2 cut(s)	485, 508
AluI	AGCT	2 cut(s)	485, 508
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	404
Aor51HI	AGCGCT	1 cut(s)	530
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	359, 485, 488
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	27, 500
AvaII	GGWCC	2 cut(s)	27, 500
BanI	GGYRCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	3 cut(s)	346, 472, 475
BccI	CCATC	2 cut(s)	17, 193
BciT130I	CCWGG	3 cut(s)	93, 199, 311
BcoDI	GTCTC	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	532
BglI	GCCNNNNNGGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	7 cut(s)	49, 360, 372, 486, 489, 520, 523
BlsI	GCNGC	7 cut(s)	50, 361, 373, 487, 490, 521, 524
Bme1390I	CCNGG	3 cut(s)	93, 199, 311
Bme18I	GGWCC	2 cut(s)	27, 500
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	27, 500
BmiI	GGNNCC	4 cut(s)	28, 304, 501, 502
BmrFI	CCNGG	3 cut(s)	93, 199, 311
BmsI	GCATC	2 cut(s)	111, 346
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	225
BsaJI	CCNNGG	5 cut(s)	91, 309, 408, 477, 495
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 213, 509
BseBI	CCWGG	3 cut(s)	93, 199, 311
BseDI	CCNNGG	5 cut(s)	91, 309, 408, 477, 495
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	98, 213, 509
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	274, 343
BseXI	GCAGC	3 cut(s)	346, 472, 475
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	3 cut(s)	98, 213, 509
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	84, 396
BspACI	CCGC	5 cut(s)	48, 372, 513, 519, 522
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	28, 304, 501, 502
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	302
BssECI	CCNNGG	5 cut(s)	91, 309, 408, 477, 495
BssMI	GATC	2 cut(s)	84, 396
BssT1I	CCWWGG	3 cut(s)	408, 477, 495
Bst2UI	CCWGG	3 cut(s)	93, 199, 311
Bst6I	CTCTTC	3 cut(s)	251, 320, 449
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	126, 189
BstENI	CCTNNNNNAGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	2 cut(s)	87, 399
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	84, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 431, 519, 528
BstNI	CCWGG	3 cut(s)	93, 199, 311
BstSCI	CCNGG	3 cut(s)	91, 197, 309
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	346, 472, 475
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	371
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	527
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	2 cut(s)	27, 500
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	7 cut(s)	184, 206, 280, 343, 371, 485, 508
CviKI_1	RGCY	7 cut(s)	184, 206, 280, 343, 371, 485, 508
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	126, 189
DpnI	GATC	2 cut(s)	86, 398
DpnII	GATC	2 cut(s)	84, 396
DraIII	CACNNNGTG	1 cut(s)	380
Eam1104I	CTCTTC	3 cut(s)	251, 320, 449
EarI	CTCTTC	3 cut(s)	251, 320, 449
Eco130I	CCWWGG	3 cut(s)	408, 477, 495
Eco47I	GGWCC	2 cut(s)	27, 500
Eco47III	AGCGCT	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	2 cut(s)	27, 500
EcoRII	CCWGG	3 cut(s)	91, 197, 309
EcoT14I	CCWWGG	3 cut(s)	408, 477, 495
ErhI	CCWWGG	3 cut(s)	408, 477, 495
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	1 cut(s)	211
FaiI	YATR	2 cut(s)	209, 213
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	7 cut(s)	49, 360, 372, 486, 489, 520, 523
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	7 cut(s)	49, 360, 372, 486, 489, 520, 523
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	7 cut(s)	49, 360, 372, 486, 489, 520, 523
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	532
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	2 cut(s)	122, 245
HpaII	CCGG	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	107, 121, 468
Hpy188III	TCNNGA	5 cut(s)	20, 242, 322, 353, 400
HpyAV	CCTTC	4 cut(s)	45, 223, 415, 424
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 431, 519, 528
HpyF3I	CTNAG	2 cut(s)	126, 189
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	529
KflI	GGGWCCC	1 cut(s)	500
Kzo9I	GATC	2 cut(s)	84, 396
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	2 cut(s)	77, 482
Lsp1109I	GCAGC	3 cut(s)	346, 472, 475
LweI	GCATC	2 cut(s)	111, 346
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	86, 398
MboI	GATC	2 cut(s)	84, 396
MboII	GAAGA	6 cut(s)	94, 268, 337, 415, 439, 466
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	8 cut(s)	92, 146, 153, 252, 307, 321, 324, 361
MseI	TTAA	1 cut(s)	252
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	3 cut(s)	93, 199, 311
MvaI	CCWGG	3 cut(s)	93, 199, 311
MwoI	GCNNNNNNNGC	4 cut(s)	368, 431, 519, 528
NdeII	GATC	2 cut(s)	84, 396
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	4 cut(s)	28, 304, 501, 502
NmuCI	GTSAC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	122, 245
PkrI	GCNGC	7 cut(s)	50, 361, 373, 487, 490, 521, 524
PpuMI	RGGWCCY	2 cut(s)	27, 500
Psp5II	RGGWCCY	2 cut(s)	27, 500
Psp6I	CCWGG	3 cut(s)	91, 197, 309
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	3 cut(s)	91, 197, 309
PspN4I	GGNNCC	4 cut(s)	28, 304, 501, 502
PspPI	GGNCC	2 cut(s)	27, 500
PspPPI	RGGWCCY	2 cut(s)	27, 500
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	7 cut(s)	49, 360, 372, 486, 489, 520, 523
Sau3AI	GATC	2 cut(s)	84, 396
Sau96I	GGNCC	2 cut(s)	27, 500
ScrFI	CCNGG	3 cut(s)	93, 199, 311
SfaNI	GCATC	2 cut(s)	111, 346
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	27, 500
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	5 cut(s)	48, 372, 513, 519, 522
SspI	AATATT	1 cut(s)	472
StyD4I	CCNGG	3 cut(s)	91, 197, 309
StyI	CCWWGG	3 cut(s)	408, 477, 495
TaiI	ACGT	1 cut(s)	268
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	145
TauI	GCSGC	4 cut(s)	51, 374, 522, 525
TfiI	GAWTC	2 cut(s)	122, 245
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	3 cut(s)	359, 485, 488
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	27, 500
XagI	CCTNNNNNAGG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.