Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

9635771 .. 9636676

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTTCTCACGACTAAGCTTTGCCGCTTCAGTGGCGCCAAGATCTACCCTGGTAGGGGCATCAGATTCATCCACTCCGATTCTCAGGTTTCCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTTAACAACCGCCTCAAGCCATCCAAGATCACATGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGACTATGCTCAAGAATCTGTGAAGAAGAAGCGCCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTGGAGGTCATCCAGAAGAGGAGGACTGAGAAGCCTGAGGTTTGTGATGCTGCTCGCGAGGTCGCTCTCTGTAGAATCTCAGCCAAAACAGGTAAGGACCTTGAACTTAGTTTTGATTATAAGCAGCAGGATATGTGTAATTTTAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

139

Amino Acids

16.22

Weight (kDa)

10.18

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	5 - 67	2.3e-25	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccB1I	GGYRCC	2 cut(s)	35, 260
AccII	CGCG	1 cut(s)	324
AciI	CCGC	2 cut(s)	25, 133
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	55, 56
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
ApeKI	GCWGC	3 cut(s)	178, 317, 391
ApoI	RAATTY	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	38, 222
AspS9I	GGNCC	2 cut(s)	249, 364
AvaII	GGWCC	2 cut(s)	249, 364
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	2 cut(s)	35, 260
BbvI	GCAGC	3 cut(s)	190, 304, 403
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	337
BfoI	RGCGCY	2 cut(s)	39, 223
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	4 cut(s)	25, 179, 318, 392
BlsI	GCNGC	4 cut(s)	26, 180, 319, 393
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	2 cut(s)	249, 364
BmgT120I	GGNCC	2 cut(s)	249, 364
BmiI	GGNNCC	2 cut(s)	37, 262
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	69, 304
BpuEI	CTTGAG	3 cut(s)	122, 183, 229
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 56
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	69, 143, 276
BseLI	CCNNNNNNNGG	2 cut(s)	55, 56
BseMII	CTCAG	4 cut(s)	98, 285, 294, 360
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	190, 304, 403
Bsh1236I	CGCG	1 cut(s)	324
BshNI	GGYRCC	2 cut(s)	35, 260
BslI	CCNNNNNNNGG	2 cut(s)	55, 56
Bsp143I	GATC	2 cut(s)	42, 150
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	2 cut(s)	25, 133
BspCNI	CTCAG	4 cut(s)	97, 286, 295, 359
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	37, 262
BspT107I	GGYRCC	2 cut(s)	35, 260
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	42, 150
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	6 cut(s)	15, 84, 294, 303, 346, 374
BstF5I	GGATG	3 cut(s)	69, 143, 276
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	2 cut(s)	39, 223
BstHHI	GCGC	2 cut(s)	38, 222
BstKTI	GATC	2 cut(s)	45, 153
BstMBI	GATC	2 cut(s)	42, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	190, 304, 403
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	69, 143, 276
BtsIMutI	CAGTG	1 cut(s)	37
BtuMI	TCGCGA	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	38, 222
Cfr13I	GGNCC	2 cut(s)	249, 364
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	156, 166
CviJI	RGCY	5 cut(s)	19, 142, 238, 301, 350
CviKI_1	RGCY	5 cut(s)	19, 142, 238, 301, 350
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	6 cut(s)	15, 84, 294, 303, 346, 374
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	44, 152
DpnII	GATC	2 cut(s)	42, 150
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	249, 364
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	49
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
FaeI	CATG	2 cut(s)	159, 169
FaiI	YATR	6 cut(s)	101, 157, 167, 195, 387, 401
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	2 cut(s)	155, 165
Fnu4HI	GCNGC	4 cut(s)	25, 179, 318, 392
FokI	GGATG	3 cut(s)	56, 130, 263
Fsp4HI	GCNGC	4 cut(s)	25, 179, 318, 392
GlaI	GCGC	2 cut(s)	37, 221
GluI	GCNGC	4 cut(s)	25, 179, 318, 392
HaeII	RGCGCY	2 cut(s)	39, 223
HhaI	GCGC	2 cut(s)	38, 222
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	159, 169
Hin6I	GCGC	2 cut(s)	36, 220
HinP1I	GCGC	2 cut(s)	36, 220
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	4 cut(s)	66, 80, 203, 342
Hpy188I	TCNGA	3 cut(s)	65, 79, 173
Hpy188III	TCNNGA	4 cut(s)	10, 200, 280, 323
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	6 cut(s)	15, 84, 294, 303, 346, 374
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	159, 169
HspAI	GCGC	2 cut(s)	36, 220
KasI	GGCGCC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	42, 150
LpnPI	CCDG	8 cut(s)	36, 63, 71, 107, 293, 315, 342, 380
Lsp1109I	GCAGC	3 cut(s)	190, 304, 403
LweI	GCATC	2 cut(s)	69, 304
MalI	GATC	2 cut(s)	44, 152
MboI	GATC	2 cut(s)	42, 150
MboII	GAAGA	3 cut(s)	223, 226, 295
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	2 cut(s)	103, 406
Mly113I	GGCGCC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	111, 146, 265, 279, 282, 298, 319
MseI	TTAA	2 cut(s)	126, 411
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	36
NdeII	GATC	2 cut(s)	42, 150
NlaIII	CATG	2 cut(s)	159, 169
NlaIV	GGNNCC	2 cut(s)	37, 262
NruI	TCGCGA	1 cut(s)	324
PfeI	GAWTC	4 cut(s)	66, 80, 203, 342
PkrI	GCNGC	4 cut(s)	26, 180, 319, 393
PluTI	GGCGCC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	37, 262
PspPI	GGNCC	2 cut(s)	249, 364
PspPPI	RGGWCCY	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	42
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	126, 411
SatI	GCNGC	4 cut(s)	25, 179, 318, 392
Sau3AI	GATC	2 cut(s)	42, 150
Sau96I	GGNCC	2 cut(s)	249, 364
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	9 cut(s)	21, 90, 122, 251, 276, 309, 330, 361, 369
SfaNI	GCATC	2 cut(s)	69, 304
SfcI	CTRYAG	1 cut(s)	337
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	2 cut(s)	249, 364
SmlI	CTYRAG	3 cut(s)	137, 198, 244
SmoI	CTYRAG	3 cut(s)	137, 198, 244
Sse9I	AATT	2 cut(s)	103, 406
SsiI	CCGC	2 cut(s)	25, 133
SspDI	GGCGCC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	49
TasI	AATT	2 cut(s)	103, 406
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	4 cut(s)	66, 80, 203, 342
Tru1I	TTAA	2 cut(s)	126, 411
Tru9I	TTAA	2 cut(s)	126, 411
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	3 cut(s)	178, 317, 391
TspDTI	ATGAA	2 cut(s)	58, 88
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	249, 364
XapI	RAATTY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.