Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Forward (+)

11373747 .. 11376255

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTCTCAAGACCGAACTCTGTAGGTTCAGTGGGGCAAAGATCTACCCTGGCAGAGGCATCAGATTTATCCGGTCCGACTCTCAGGTGTTCCTCTTTATCAATTCAAAATGTAAGAGGTACTTCCACAACCGGTTGAAGCCATCCAAGATTACATGGACAGCCATGTTCAGGAAGCAACACAAGAAGGATATTGCTCAAGAATCTGTTAAGAAGAGGAGACGTACCAACAAGAAGCCTTATTCAAGGTCTATAGTTGGTGCCACCCTGGAGGTTATCCAGAAGAGAAGGACTGAAAAGCCAGAAGTTCGTGATGCTGCCCGTGAAGCTGCCCTCCGGGAAATCAAGGAAAGGATTAAGAAGACCAAGGATGAGAAGAAGGCTAAGAAGGCAGAAGTTGTTGCCAAACAGAAGGTCAAGGGTCAGAATATTTCCAAGGGAGCTGCCCCCAAGGGTCCCAAGCTTGGTGGCGGTGGCGGTAAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

163

Amino Acids

18.56

Weight (kDa)

10.94

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	3 - 67	3e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	2 cut(s)	471, 477
AfaI	GTAC	2 cut(s)	122, 226
AfeI	AGCGCT	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	56, 171, 464
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	108, 139, 246
AjnI	CCWGG	2 cut(s)	49, 267
AluBI	AGCT	3 cut(s)	329, 443, 463
AluI	AGCT	3 cut(s)	329, 443, 463
Alw26I	GTCTC	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	485
ApeKI	GCWGC	3 cut(s)	317, 329, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	399, 431
AsiGI	ACCGGT	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	75, 455
AsuC2I	CCSGG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	75, 455
BanI	GGYRCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	304, 316, 430
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	51, 269
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	2 cut(s)	22, 252
BfoI	RGCGCY	1 cut(s)	487
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	3 cut(s)	318, 330, 444
BlsI	GCNGC	3 cut(s)	319, 331, 445
Bme1390I	CCNGG	3 cut(s)	51, 269, 338
Bme18I	GGWCC	2 cut(s)	75, 455
BmgT120I	GGNCC	2 cut(s)	75, 455
BmiI	GGNNCC	3 cut(s)	262, 456, 457
BmrFI	CCNGG	3 cut(s)	51, 269, 338
BmsI	GCATC	2 cut(s)	69, 304
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	5 cut(s)	49, 267, 366, 435, 450
BsaWI	WCCGGW	2 cut(s)	72, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 171, 464
Bse118I	RCCGGY	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	51, 269
BseDI	CCNNGG	5 cut(s)	49, 267, 366, 435, 450
BseGI	GGATG	2 cut(s)	143, 376
BseLI	CCNNNNNNNGG	3 cut(s)	56, 171, 464
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	304, 316, 430
BshNI	GGYRCC	1 cut(s)	260
BshTI	ACCGGT	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	73, 133, 337
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	56, 171, 464
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	471, 477
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	262, 456, 457
BspT107I	GGYRCC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	5 cut(s)	49, 267, 366, 435, 450
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	3 cut(s)	366, 435, 450
Bst2UI	CCWGG	2 cut(s)	51, 269
Bst6I	CTCTTC	2 cut(s)	209, 278
BstDEI	CTNAG	2 cut(s)	84, 384
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	143, 376
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 389, 483
BstNI	CCWGG	2 cut(s)	51, 269
BstSCI	CCNGG	3 cut(s)	49, 267, 336
BstSFI	CTRYAG	2 cut(s)	22, 252
BstV1I	GCAGC	3 cut(s)	304, 316, 430
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	143, 376
BtsIMutI	CAGTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	75, 455
CpoI	CGGWCCG	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	121, 225
CspAI	ACCGGT	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	2 cut(s)	156, 166
CviJI	RGCY	8 cut(s)	142, 164, 238, 301, 329, 383, 443, 463
CviKI_1	RGCY	8 cut(s)	142, 164, 238, 301, 329, 383, 443, 463
CviQI	GTAC	2 cut(s)	121, 225
DdeI	CTNAG	2 cut(s)	84, 384
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	209, 278
EarI	CTCTTC	2 cut(s)	209, 278
Eco130I	CCWWGG	3 cut(s)	366, 435, 450
Eco47I	GGWCC	2 cut(s)	75, 455
Eco47III	AGCGCT	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	49, 267
EcoT14I	CCWWGG	3 cut(s)	366, 435, 450
ErhI	CCWWGG	3 cut(s)	366, 435, 450
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	2 cut(s)	159, 169
FaiI	YATR	3 cut(s)	157, 167, 254
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	2 cut(s)	155, 165
Fnu4HI	GCNGC	3 cut(s)	318, 330, 444
FokI	GGATG	2 cut(s)	130, 383
Fsp4HI	GCNGC	3 cut(s)	318, 330, 444
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	3 cut(s)	318, 330, 444
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	487
HapII	CCGG	3 cut(s)	73, 133, 337
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	159, 169
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	80, 203
HpaII	CCGG	3 cut(s)	73, 133, 337
Hpy188I	TCNGA	3 cut(s)	65, 79, 426
Hpy188III	TCNNGA	5 cut(s)	10, 172, 200, 280, 311
HpyAV	CCTTC	5 cut(s)	181, 282, 373, 382, 406
HpyCH4IV	ACGT	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 389, 483
HpyF3I	CTNAG	2 cut(s)	84, 384
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	159, 169
HspAI	GCGC	1 cut(s)	484
KflI	GGGWCCC	1 cut(s)	455
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	3 cut(s)	304, 316, 430
LweI	GCATC	2 cut(s)	69, 304
MaeII	ACGT	1 cut(s)	223
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	226, 295, 373, 388
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	50, 104, 111, 210, 265, 344
MseI	TTAA	2 cut(s)	210, 357
MspI	CCGG	3 cut(s)	73, 133, 337
MspR9I	CCNGG	3 cut(s)	51, 269, 338
MvaI	CCWGG	2 cut(s)	51, 269
MwoI	GCNNNNNNNGC	3 cut(s)	326, 389, 483
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	159, 169
NlaIV	GGNNCC	3 cut(s)	262, 456, 457
PfeI	GAWTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	336
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	319, 331, 445
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	49, 267
PspGI	CCWGG	2 cut(s)	49, 267
PspN4I	GGNNCC	3 cut(s)	262, 456, 457
PspPI	GGNCC	2 cut(s)	75, 455
PspPPI	RGGWCCY	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	122, 226
RsaNI	GTAC	2 cut(s)	121, 225
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	210, 357
SatI	GCNGC	3 cut(s)	318, 330, 444
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	2 cut(s)	75, 455
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	51, 269, 338
SfaNI	GCATC	2 cut(s)	69, 304
SfcI	CTRYAG	2 cut(s)	22, 252
SinI	GGWCC	2 cut(s)	75, 455
SmlI	CTYRAG	2 cut(s)	8, 198
SmoI	CTYRAG	2 cut(s)	8, 198
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	471, 477
SspI	AATATT	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	49, 267, 336
StyI	CCWWGG	3 cut(s)	366, 435, 450
TaiI	ACGT	1 cut(s)	226
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	210, 357
Tru9I	TTAA	2 cut(s)	210, 357
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	3 cut(s)	317, 329, 443
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	75, 455
XagI	CCTNNNNNAGG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.