Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

45350898 .. 45391024

Gene Structure 40127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG343600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCGTCCCGGCACGTCTTCCTCGGGGAACCGCCGGAGGCAGCCATGGTTCTCAAGACTGAGCTTTACCGCTTCAGTGGCGCCAAGAACTACCCTAGTAGGGGCATCAGATTCATCCGCTCCCATTCTCAGGTTTTCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTCCACAACCGCCTCAAGCCATCCAAGATCACATGGACTGCCATGTTCAGAAAGCAGCACCAGAAGGACTCTGCTCAAGAATCTGTGAAGAAGAAGCACCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTGGAGATCATCCAGAAGAGGAGGACTGAGAAGCCTGAGGTCCGTGATGCTACTCGCGAGGCCGCTCTCTGTTCCAAACGTTGCGCTCAATGGTACAAGCCAACCCACAAATTTTACAGCTACTCTATGTCCAATGTTGATAAAAGTCATCCCTCGATACCTAGCCGCTCTATGTCCTATGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

166

Amino Acids

19.46

Weight (kDa)

10.36

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	19 - 82	4.5e-21	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 305
AccBSI	CCGCTC	3 cut(s)	120, 377, 480
AccII	CGCG	1 cut(s)	369
AciI	CCGC	6 cut(s)	32, 70, 118, 178, 375, 478
AclI	AACGTT	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	148, 422
AcuI	CTGAAG	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	167, 407
AfiI	CCNNNNNNNGG	3 cut(s)	100, 101, 130
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	2 cut(s)	64, 432
AluI	AGCT	2 cut(s)	64, 432
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	41, 223
ApoI	RAATTY	2 cut(s)	148, 422
AspLEI	GCGC	2 cut(s)	83, 398
AspS9I	GGNCC	2 cut(s)	294, 352
AsuC2I	CCSGG	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	294, 352
AxyI	CCTNAGG	1 cut(s)	348
BanI	GGYRCC	2 cut(s)	80, 305
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	53, 235
BccI	CCATC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	2 cut(s)	96, 474
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	4 cut(s)	42, 224, 375, 478
BlsI	GCNGC	4 cut(s)	43, 225, 376, 479
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	2 cut(s)	294, 352
BmeT110I	CYCGRG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	294, 352
BmiI	GGNNCC	3 cut(s)	30, 82, 307
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	114, 349
BpiI	GAAGAC	1 cut(s)	10
BpuEI	CTTGAG	4 cut(s)	38, 167, 228, 274
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	22, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 101, 130
Bse21I	CCTNAGG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	22, 45
BseGI	GGATG	4 cut(s)	114, 188, 321, 460
BseLI	CCNNNNNNNGG	3 cut(s)	100, 101, 130
BseMII	CTCAG	4 cut(s)	51, 143, 330, 339
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	53, 235
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	2 cut(s)	80, 305
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	10, 35
BslI	CCNNNNNNNGG	3 cut(s)	100, 101, 130
BsnI	GGCC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	195, 318
Bsp19I	CCATGG	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	6 cut(s)	32, 70, 118, 178, 375, 478
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	4 cut(s)	52, 142, 331, 340
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	30, 82, 307
BspT107I	GGYRCC	2 cut(s)	80, 305
BsrBI	CCGCTC	3 cut(s)	120, 377, 480
BssECI	CCNNGG	2 cut(s)	22, 45
BssMI	GATC	2 cut(s)	195, 318
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	323
BstACI	GRCGYC	1 cut(s)	81
BstDEI	CTNAG	4 cut(s)	60, 129, 339, 348
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	4 cut(s)	114, 188, 321, 460
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 398
BstKTI	GATC	2 cut(s)	198, 321
BstMBI	GATC	2 cut(s)	195, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	53, 235
BstV2I	GAAGAC	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	114, 188, 321, 460
BtsIMutI	CAGTG	1 cut(s)	82
BtuMI	TCGCGA	1 cut(s)	369
CfoI	GCGC	2 cut(s)	83, 398
Cfr13I	GGNCC	2 cut(s)	294, 352
Csp6I	GTAC	2 cut(s)	166, 406
CviAII	CATG	3 cut(s)	46, 201, 211
CviJI	RGCY	9 cut(s)	44, 64, 187, 283, 346, 374, 412, 432, 477
CviKI_1	RGCY	9 cut(s)	44, 64, 187, 283, 346, 374, 412, 432, 477
CviQI	GTAC	2 cut(s)	166, 406
DdeI	CTNAG	4 cut(s)	60, 129, 339, 348
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	2 cut(s)	197, 320
DpnII	GATC	2 cut(s)	195, 318
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	294, 352
Eco57I	CTGAAG	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 204, 214
FaiI	YATR	7 cut(s)	47, 146, 202, 212, 440, 485, 492
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	45, 200, 210
Fnu4HI	GCNGC	4 cut(s)	42, 224, 375, 478
FokI	GGATG	4 cut(s)	101, 175, 308, 447
Fsp4HI	GCNGC	4 cut(s)	42, 224, 375, 478
FspBI	CTAG	2 cut(s)	96, 474
GlaI	GCGC	2 cut(s)	82, 397
GluI	GCNGC	4 cut(s)	42, 224, 375, 478
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	2 cut(s)	10, 35
HhaI	GCGC	2 cut(s)	83, 398
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	49, 204, 214
Hin6I	GCGC	2 cut(s)	81, 396
HinP1I	GCGC	2 cut(s)	81, 396
HinfI	GANTC	3 cut(s)	111, 236, 248
HpaII	CCGG	2 cut(s)	10, 35
Hpy188I	TCNGA	2 cut(s)	110, 218
Hpy188III	TCNNGA	4 cut(s)	55, 245, 325, 368
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	2 cut(s)	15, 391
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	4 cut(s)	60, 129, 339, 348
HpySE526I	ACGT	2 cut(s)	15, 391
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	49, 204, 214
HspAI	GCGC	2 cut(s)	81, 396
KasI	GGCGCC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	195, 318
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	23, 48, 116, 152, 242, 338, 360
Lsp1109I	GCAGC	2 cut(s)	53, 235
LweI	GCATC	2 cut(s)	114, 349
MaeI	CTAG	2 cut(s)	96, 474
MaeII	ACGT	2 cut(s)	15, 391
MalI	GATC	2 cut(s)	197, 320
MbiI	CCGCTC	3 cut(s)	120, 377, 480
MboI	GATC	2 cut(s)	195, 318
MboII	GAAGA	4 cut(s)	10, 268, 271, 340
MluCI	AATT	2 cut(s)	148, 422
Mly113I	GGCGCC	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	31, 32, 156, 191, 324, 327, 343, 364, 475
MseI	TTAA	1 cut(s)	499
MspI	CCGG	2 cut(s)	10, 35
MspR9I	CCNGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	78
NarI	GGCGCC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	195, 318
NlaIII	CATG	3 cut(s)	49, 204, 214
NlaIV	GGNNCC	3 cut(s)	30, 82, 307
NruI	TCGCGA	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	111, 248
PkrI	GCNGC	4 cut(s)	43, 225, 376, 479
PleI	GAGTC	1 cut(s)	230
PluTI	GGCGCC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	230
Psp1406I	AACGTT	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	30, 82, 307
PspPI	GGNCC	2 cut(s)	294, 352
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	2 cut(s)	167, 407
RsaNI	GTAC	2 cut(s)	166, 406
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	4 cut(s)	42, 224, 375, 478
Sau3AI	GATC	2 cut(s)	195, 318
Sau96I	GGNCC	2 cut(s)	294, 352
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	9 cut(s)	18, 66, 135, 167, 296, 354, 394, 434, 475
SfaNI	GCATC	2 cut(s)	114, 349
SfoI	GGCGCC	1 cut(s)	82
SinI	GGWCC	2 cut(s)	294, 352
SmlI	CTYRAG	4 cut(s)	53, 182, 243, 289
SmoI	CTYRAG	4 cut(s)	53, 182, 243, 289
Sse9I	AATT	2 cut(s)	148, 422
SsiI	CCGC	6 cut(s)	32, 70, 118, 178, 375, 478
SspDI	GGCGCC	1 cut(s)	80
SspMI	CTAG	2 cut(s)	96, 474
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	2 cut(s)	18, 394
TaqI	TCGA	1 cut(s)	467
TasI	AATT	2 cut(s)	148, 422
TauI	GCSGC	2 cut(s)	377, 480
TfiI	GAWTC	2 cut(s)	111, 248
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	41, 223
TspDTI	ATGAA	2 cut(s)	103, 133
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	294, 352
XapI	RAATTY	2 cut(s)	148, 422
XspI	CTAG	2 cut(s)	96, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.