Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

10304064 .. 10306037

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTCTGAAGACCGAGCTCTGTCGTTTCAGTGGCGCCAAGATTTACCCCGGAAAGGGAATCAGATTCATCCGCTCTGATTCTCAGGTCTTCCTCTTCGCCAACTCCAAATGCAAGAGGTACTTCCACAACCGCCTCAAGCCCTCCAAGCTCACCTGGACCGCCATGTACCGTAAGCAGCACAAGAAGGACATTGCTGCTGAGGCTGTGAAGAAGAAGCGACGCTCAAACAAAAAGCCTTATTCGAGGTCCATTGTTGGTGCCACATTGGAAGTTATTCAGAAGCGAAGGACCGAGAAGCCCGAGGTCCGCGACGCCGCCCGTGAGGCCGCTCTCCGTGAAATCAAGGAGAGGATTAAGAAGACTAAGGATGAGAAGAAGGCAAAGAAGGCTGAATTGGTGTCCAAGTCAAAGGGTCAGTCCAAGGGCAATGTGCCCAAGGCTGCTGCCCCAAAAGCCCCTAAGCTTGGAGGTGGTGGTGGAAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

164

Amino Acids

18.45

Weight (kDa)

10.72

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 260
AccBSI	CCGCTC	2 cut(s)	75, 332
AccII	CGCG	1 cut(s)	312
AciI	CCGC	6 cut(s)	73, 133, 162, 310, 318, 330
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	2 cut(s)	36, 315
AfaI	GTAC	2 cut(s)	122, 170
AfiI	CCNNNNNNNGG	3 cut(s)	55, 56, 467
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	3 cut(s)	19, 151, 466
AluI	AGCT	3 cut(s)	19, 151, 466
Alw21I	GWGCWC	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	4 cut(s)	178, 197, 443, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	4 cut(s)	159, 249, 291, 307
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	4 cut(s)	159, 249, 291, 307
BaeGI	GKGCMC	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	35, 260
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	3 cut(s)	17, 82, 368
Bbv12I	GWGCWC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	184, 190, 430, 433
BciT130I	CCWGG	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	39
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	6 cut(s)	179, 198, 318, 330, 444, 447
BlsI	GCNGC	6 cut(s)	180, 199, 319, 331, 445, 448
Bme1390I	CCNGG	2 cut(s)	51, 157
Bme18I	GGWCC	4 cut(s)	159, 249, 291, 307
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	4 cut(s)	159, 249, 291, 307
BmiI	GGNNCC	2 cut(s)	37, 262
BmrFI	CCNGG	2 cut(s)	51, 157
BpiI	GAAGAC	3 cut(s)	17, 82, 368
Bpu10I	CCTNAGC	2 cut(s)	201, 462
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	51
BsaHI	GRCGYC	2 cut(s)	36, 315
BsaJI	CCNNGG	4 cut(s)	49, 303, 423, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 56, 467
Bse3DI	GCAATG	2 cut(s)	192, 436
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	4 cut(s)	49, 303, 423, 438
BseGI	GGATG	2 cut(s)	69, 376
BseLI	CCNNNNNNNGG	3 cut(s)	55, 56, 467
BseMI	GCAATG	2 cut(s)	192, 436
BseMII	CTCAG	2 cut(s)	98, 192
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	4 cut(s)	184, 190, 430, 433
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	2 cut(s)	35, 260
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	55, 56, 467
BsnI	GGCC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	21, 438
BspACI	CCGC	6 cut(s)	73, 133, 162, 310, 318, 330
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	97, 193
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	37, 262
BspT107I	GGYRCC	2 cut(s)	35, 260
BsrBI	CCGCTC	2 cut(s)	75, 332
BsrDI	GCAATG	2 cut(s)	192, 436
BssECI	CCNNGG	4 cut(s)	49, 303, 423, 438
BssNI	GRCGYC	2 cut(s)	36, 315
BssT1I	CCWWGG	2 cut(s)	423, 438
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	2 cut(s)	36, 315
BstDEI	CTNAG	4 cut(s)	84, 201, 366, 462
BstF5I	GGATG	2 cut(s)	69, 376
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 203, 326, 389, 455
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	49, 155
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	184, 190, 430, 433
BstV2I	GAAGAC	3 cut(s)	17, 82, 368
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	69, 376
BtsIMutI	CAGTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	4 cut(s)	159, 249, 291, 307
CseI	GACGC	2 cut(s)	231, 323
Csp6I	GTAC	2 cut(s)	121, 169
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	2 cut(s)	121, 169
DdeI	CTNAG	4 cut(s)	84, 201, 366, 462
DinI	GGCGCC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	423, 438
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	4 cut(s)	159, 249, 291, 307
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	423, 438
EcoT38I	GRGCYC	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	423, 438
FaeI	CATG	1 cut(s)	169
FaiI	YATR	1 cut(s)	167
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	6 cut(s)	179, 198, 318, 330, 444, 447
FokI	GGATG	2 cut(s)	56, 383
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	6 cut(s)	179, 198, 318, 330, 444, 447
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	6 cut(s)	179, 198, 318, 330, 444, 447
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	2 cut(s)	231, 323
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	2 cut(s)	36, 315
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	3 cut(s)	60, 66, 80
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	4 cut(s)	9, 65, 79, 282
Hpy99I	CGWCG	2 cut(s)	225, 317
HpyAV	CCTTC	4 cut(s)	181, 282, 373, 382
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 203, 326, 389, 455
HpyF3I	CTNAG	4 cut(s)	84, 201, 366, 462
Hsp92I	GRCGYC	2 cut(s)	36, 315
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	64, 71, 142, 169
Lsp1109I	GCAGC	4 cut(s)	184, 190, 430, 433
MbiI	CCGCTC	2 cut(s)	75, 332
MboII	GAAGA	7 cut(s)	22, 82, 88, 223, 226, 373, 388
MhlI	GDGCHC	2 cut(s)	21, 438
MluCI	AATT	1 cut(s)	395
Mly113I	GGCGCC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	357
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	51, 157
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	5 cut(s)	148, 203, 326, 389, 455
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	51
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	37, 262
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	60, 66, 80
PkrI	GCNGC	6 cut(s)	180, 199, 319, 331, 445, 448
PluTI	GGCGCC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	37, 262
PspPI	GGNCC	4 cut(s)	159, 249, 291, 307
RsaI	GTAC	2 cut(s)	122, 170
RsaNI	GTAC	2 cut(s)	121, 169
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	6 cut(s)	179, 198, 318, 330, 444, 447
Sau96I	GGNCC	4 cut(s)	159, 249, 291, 307
ScrFI	CCNGG	2 cut(s)	51, 157
SduI	GDGCHC	2 cut(s)	21, 438
SetI	ASST	9 cut(s)	21, 90, 122, 153, 158, 251, 309, 468, 475
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	4 cut(s)	159, 249, 291, 307
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	6 cut(s)	73, 133, 162, 310, 318, 330
SspDI	GGCGCC	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	49, 155
StyI	CCWWGG	2 cut(s)	423, 438
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	245
TaqII	GACCGA	2 cut(s)	29, 308
TasI	AATT	1 cut(s)	395
TauI	GCSGC	2 cut(s)	320, 332
TfiI	GAWTC	3 cut(s)	60, 66, 80
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	4 cut(s)	178, 197, 443, 446
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	4 cut(s)	159, 249, 291, 307
XmnI	GAANNNNTTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.